SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    464401 6fdj:G (2.308) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464402 6fdj:G (2.308) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464403 6fdj:G (2.308) BS05 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464404 6fdj:H (2.308) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464405 6fdj:H (2.308) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464406 6fdj:H (2.308) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464407 6fdj:I (2.308) BS01 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464408 6fdj:I (2.308) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464409 6fdj:I (2.308) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464410 6fdj:I (2.308) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464411 6fdj:J (2.308) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464412 6fdj:J (2.308) BS02 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464413 6fdj:J (2.308) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464414 6fdj:J (2.308) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464415 6fdj:J (2.308) BS05 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464416 6fdj:K (2.308) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464417 6fdj:K (2.308) BS02 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464418 6fdj:K (2.308) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464419 6fdj:K (2.308) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464420 6fdj:K (2.308) BS05 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464421 6fdj:L (2.308) BS01 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464422 6fdj:L (2.308) BS02 OXY 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464423 6fdj:L (2.308) BS03 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464424 6fdj:L (2.308) BS04 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464425 6fdj:L (2.308) BS05 CU 1.10.3.2 GO:0005507 ... A0A0M4FJ81 31261802
    464426 6fdk:A (1.6) BS01 AYE 3.4.22.- GO:0006508 ... B0B9A0 30028574
    464427 6fdm:A (2.1) BS01 ANP 2.7.11.1 GO:0003824 ... Q9BVS4 31390939
    464428 6fdm:C (2.1) BS01 ANP 2.7.11.1 GO:0003824 ... Q9BVS4 31390939
    464429 6fdp:A (-1.00) BS01 peptide ? N/A Q9H6T3 30033218
    464430 6fdq:A (2.3) BS01 2UQ 3.4.22.- GO:0006508 ... B0B9A0 30028574
    464431 6fdq:B (2.3) BS01 2UQ 3.4.22.- GO:0006508 ... B0B9A0 30028574
    464432 6fdr:A (1.4) BS01 SF4 ? GO:0003677 ... P00214 10387068
    464433 6fdr:A (1.4) BS02 F3S ? GO:0003677 ... P00214 10387068
    464434 6fds:A (2.2) BS01 D5T 3.1.4.- GO:0004114 ... Q8WQX9 N/A BindingDB: Ki=44nM
    464435 6fds:A (2.2) BS02 ZN 3.1.4.- GO:0004114 ... Q8WQX9 N/A
    464436 6fds:B (2.2) BS01 ZN 3.1.4.- GO:0004114 ... Q8WQX9 N/A
    464437 6fds:B (2.2) BS02 D5T 3.1.4.- GO:0004114 ... Q8WQX9 N/A BindingDB: Ki=44nM
    464438 6fdt:A (-1.00) BS01 peptide ? N/A Q9H6T3 30033218
    464439 6fdu:B (2.3) BS01 D5W 3.4.22.- GO:0006508 ... B0B9A0 30028574
    464440 6fdw:A (1.96) BS01 D62 3.1.4.- GO:0004114 ... Q8WQX9 N/A BindingDB: Ki=43nM
    464441 6fdw:A (1.96) BS02 ZN 3.1.4.- GO:0004114 ... Q8WQX9 N/A
    464442 6fdw:B (1.96) BS01 D62 3.1.4.- GO:0004114 ... Q8WQX9 N/A BindingDB: Ki=43nM
    464443 6fdw:B (1.96) BS02 ZN 3.1.4.- GO:0004114 ... Q8WQX9 N/A
    464444 6fdx:A (2.31) BS01 ZN 3.1.4.- GO:0004114 ... Q8WQX9 N/A
    464445 6fdx:A (2.31) BS02 D5Z 3.1.4.- GO:0004114 ... Q8WQX9 N/A BindingDB: Ki=25nM
    464446 6fdx:B (2.31) BS01 ZN 3.1.4.- GO:0004114 ... Q8WQX9 N/A
    464447 6fdx:B (2.31) BS02 D5Z 3.1.4.- GO:0004114 ... Q8WQX9 N/A BindingDB: Ki=25nM
    464448 6fdy:U (1.7) BS01 DB8 2.7.11.1 GO:0004672 ... Q6PHR2 N/A BindingDB: Kd=460nM
    464449 6fdy:U (1.7) BS02 DB8 2.7.11.1 GO:0004672 ... Q6PHR2 N/A BindingDB: Kd=460nM
    464450 6fdz:U (2.55) BS01 C87 2.7.11.1 GO:0004672 ... Q6PHR2 N/A
    464451 6fe0:A (1.91) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 29928486
    464452 6fe0:A (1.91) BS02 V90 4.2.1.1 GO:0004089 ... Q16790 29928486 MOAD: Kd=1.1nM
    BindingDB: Kd=15nM
    464453 6fe0:B (1.91) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 29928486
    464454 6fe0:B (1.91) BS02 V90 4.2.1.1 GO:0004089 ... Q16790 29928486 MOAD: Kd=1.1nM
    BindingDB: Kd=15nM
    464455 6fe0:C (1.91) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 29928486
    464456 6fe0:C (1.91) BS02 V90 4.2.1.1 GO:0004089 ... Q16790 29928486 MOAD: Kd=1.1nM
    BindingDB: Kd=15nM
    464457 6fe0:D (1.91) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 29928486
    464458 6fe0:D (1.91) BS02 V90 4.2.1.1 GO:0004089 ... Q16790 29928486 MOAD: Kd=1.1nM
    BindingDB: Kd=15nM
    464459 6fe1:A (1.95) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 29928486
    464460 6fe1:A (1.95) BS02 V14 4.2.1.1 GO:0004089 ... Q16790 29928486 MOAD: Kd=0.05nM
    BindingDB: Kd=<10.0nM
    464461 6fe1:B (1.95) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 29928486
    464462 6fe1:B (1.95) BS02 V14 4.2.1.1 GO:0004089 ... Q16790 29928486 MOAD: Kd=0.05nM
    BindingDB: Kd=<10.0nM
    464463 6fe1:C (1.95) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 29928486
    464464 6fe1:C (1.95) BS02 V14 4.2.1.1 GO:0004089 ... Q16790 29928486 MOAD: Kd=0.05nM
    BindingDB: Kd=<10.0nM
    464465 6fe1:D (1.95) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 29928486
    464466 6fe1:D (1.95) BS02 V14 4.2.1.1 GO:0004089 ... Q16790 29928486 MOAD: Kd=0.05nM
    BindingDB: Kd=<10.0nM
    464467 6fe2:A (1.87) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 29928486
    464468 6fe2:B (1.87) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 29928486
    464469 6fe2:C (1.87) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 29928486
    464470 6fe2:D (1.87) BS01 ZN 4.2.1.1 GO:0004089 ... Q16790 29928486
    464471 6fe3:A (1.62) BS01 D68 3.1.4.- GO:0004114 ... Q8WQX9 N/A BindingDB: Ki=407nM
    464472 6fe3:A (1.62) BS02 ZN 3.1.4.- GO:0004114 ... Q8WQX9 N/A
    464473 6fe3:B (1.62) BS01 ZN 3.1.4.- GO:0004114 ... Q8WQX9 N/A
    464474 6fe5:A (1.52) BS01 ZN 3.4.17.21 GO:0004180 ... Q04609 30552009
    464475 6fe5:A (1.52) BS02 ZN 3.4.17.21 GO:0004180 ... Q04609 30552009
    464476 6fe5:A (1.52) BS03 CA 3.4.17.21 GO:0004180 ... Q04609 30552009
    464477 6fe5:A (1.52) BS04 D6E 3.4.17.21 GO:0004180 ... Q04609 30552009 BindingDB: Ki=0.580000nM, IC50=0.500000nM
    464478 6fe6:A (-1.00) BS01 4P2 3.6.4.13 GO:0006508 ... A6N4I5 N/A
    464479 6fe7:A (2.0) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    464480 6fe7:A (2.0) BS02 D62 3.1.4.53 GO:0004114 ... Q08499 N/A BindingDB: Ki=0.354813nM
    464481 6fe7:B (2.0) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    464482 6fe7:B (2.0) BS02 D62 3.1.4.53 GO:0004114 ... Q08499 N/A BindingDB: Ki=0.354813nM
    464483 6fe7:C (2.0) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    464484 6fe7:C (2.0) BS02 D62 3.1.4.53 GO:0004114 ... Q08499 N/A BindingDB: Ki=0.354813nM
    464485 6fe7:D (2.0) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    464486 6fe7:D (2.0) BS02 D62 3.1.4.53 GO:0004114 ... Q08499 N/A BindingDB: Ki=0.354813nM
    464487 6fea:A (1.2) BS01 D6N 1.18.6.1 GO:0005524 ... C1DI25 29599235
    464488 6fea:A (1.2) BS02 CO3 1.18.6.1 GO:0005524 ... C1DI25 29599235
    464489 6fea:A (1.2) BS03 CLF 1.18.6.1 GO:0005524 ... C1DI25 29599235
    464490 6fea:B (1.2) BS01 CLF 1.18.6.1 GO:0009399 ... C1DI23 29599235
    464491 6fea:D (1.2) BS01 D6N 1.18.6.1 GO:0005524 ... C1DI25 29599235
    464492 6fea:D (1.2) BS02 CO3 1.18.6.1 GO:0005524 ... C1DI25 29599235
    464493 6fea:D (1.2) BS03 CLF 1.18.6.1 GO:0005524 ... C1DI25 29599235
    464494 6fea:E (1.2) BS01 CLF 1.18.6.1 GO:0009399 ... C1DI23 29599235
    464495 6feb:A (1.93) BS01 D5Z 3.1.4.53 GO:0004114 ... Q08499 N/A BindingDB: Ki=0.154882nM
    464496 6feb:A (1.93) BS02 D5Z 3.1.4.53 GO:0004114 ... Q08499 N/A BindingDB: Ki=0.154882nM
    464497 6feb:A (1.93) BS03 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    464498 6feb:B (1.93) BS01 D5Z 3.1.4.53 GO:0004114 ... Q08499 N/A BindingDB: Ki=0.154882nM
    464499 6feb:B (1.93) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    464500 6fec:2 (6.3) BS01 rna N/A GO:0003723 ... N/A 29401259
    464501 6fec:G (6.3) BS01 rna ? GO:0002181 ... P62280 29401259
    464502 6fec:H (6.3) BS01 rna ? GO:0000462 ... P62249 29401259
    464503 6fec:I (6.3) BS01 rna ? GO:0002181 ... P62701 29401259
    464504 6fec:J (6.3) BS01 rna ? GO:0002181 ... P62273 29401259
    464505 6fec:K (6.3) BS01 rna ? GO:0002181 ... P46781 29401259
    464506 6fec:L (6.3) BS01 rna ? GO:0002181 ... P62269 29401259
    464507 6fec:P (6.3) BS01 rna N/A GO:0003676 ... N/A 29401259
    464508 6fec:P (6.3) BS02 rna N/A GO:0003676 ... N/A 29401259
    464509 6fec:P (6.3) BS03 rna N/A GO:0003676 ... N/A 29401259
    464510 6fec:Q (6.3) BS01 rna ? GO:0002181 ... P62266 29401259
    464511 6fec:R (6.3) BS01 rna N/A GO:0003735 ... N/A 29401259
    464512 6fec:S (6.3) BS01 rna 3.6.5.3 GO:0000049 ... P41091 29401259
    464513 6fec:S (6.3) BS02 peptide 3.6.5.3 GO:0000049 ... P41091 29401259
    464514 6fec:U (6.3) BS01 rna ? GO:0000028 ... P46782 29401259
    464515 6fec:U (6.3) BS02 rna ? GO:0000028 ... P46782 29401259
    464516 6fec:V (6.3) BS01 rna ? GO:0003735 ... P62861 29401259
    464517 6fec:V (6.3) BS02 rna ? GO:0003735 ... P62861 29401259
    464518 6fec:W (6.3) BS01 rna ? N/A P62851 29401259
    464519 6fec:X (6.3) BS01 rna ? GO:0001843 ... P62081 29401259
    464520 6fec:Y (6.3) BS01 rna ? GO:0000028 ... P42677 29401259
    464521 6fec:Z (6.3) BS01 rna ? GO:0002181 ... P62277 29401259
    464522 6fec:a (6.3) BS01 rna ? GO:0002181 ... P62244 29401259
    464523 6fec:c (6.3) BS01 rna N/A GO:0003723 ... N/A 29401259
    464524 6fec:c (6.3) BS02 rna N/A GO:0003723 ... N/A 29401259
    464525 6fec:e (6.3) BS01 rna ? GO:0002181 ... P08708 29401259
    464526 6fec:f (6.3) BS01 rna ? GO:0003735 ... P08865 29401259
    464527 6fec:g (6.3) BS01 rna 4.2.99.18 GO:0000977 ... P23396 29401259
    464528 6fec:g (6.3) BS02 rna 4.2.99.18 GO:0000977 ... P23396 29401259
    464529 6fec:h (6.3) BS01 rna ? GO:0003723 ... P60866 29401259
    464530 6fec:i (6.3) BS01 rna ? GO:0003735 ... P61247 29401259
    464531 6fec:j (6.3) BS01 rna ? GO:0000028 ... P62263 29401259
    464532 6fec:j (6.3) BS02 rna ? GO:0000028 ... P62263 29401259
    464533 6fec:k (6.3) BS01 rna N/A GO:0003735 ... N/A 29401259
    464534 6fec:k (6.3) BS02 rna N/A GO:0003735 ... N/A 29401259
    464535 6fec:l (6.3) BS01 rna ? GO:0000028 ... P62857 29401259
    464536 6fec:l (6.3) BS02 rna ? GO:0000028 ... P62857 29401259
    464537 6fec:m (6.3) BS01 rna ? GO:0001891 ... P63244 29401259
    464538 6fec:n (6.3) BS01 rna ? GO:0003723 ... P62841 29401259
    464539 6fec:o (6.3) BS01 rna ? GO:0000462 ... P62241 29401259
    464540 6fec:p (6.3) BS01 rna ? GO:0003735 ... P62979 29401259
    464541 6fec:q (6.3) BS01 rna ? GO:0000082 ... P62753 29401259
    464542 6fec:r (6.3) BS01 rna ? GO:0002181 ... P25398 29401259
    464543 6fec:s (6.3) BS01 rna ? GO:0002181 ... P62847 29401259
    464544 6fec:t (6.3) BS01 rna ? N/A P46783 29401259
    464545 6fec:u (6.3) BS01 rna ? GO:0001731 ... P23588 29401259
    464546 6fec:w (6.3) BS01 rna N/A GO:0003676 ... N/A 29401259
    464547 6fee:A () BS01 ZN N/A N/A N/A N/A
    464548 6fef:A () BS01 ZN N/A N/A N/A N/A
    464549 6fef:A () BS02 ZN N/A N/A N/A N/A
    464550 6feg:B (-1.00) BS01 CA ? GO:0000086 ... P0DP23 29463698
    464551 6feg:B (-1.00) BS02 CA ? GO:0000086 ... P0DP23 29463698
    464552 6feh:B (-1.00) BS01 CA ? GO:0000086 ... P0DP23 29463698
    464553 6feh:B (-1.00) BS02 CA ? GO:0000086 ... P0DP23 29463698
    464554 6feh:B (-1.00) BS03 CA ? GO:0000086 ... P0DP23 29463698
    464555 6feh:B (-1.00) BS04 CA ? GO:0000086 ... P0DP23 29463698
    464556 6fei:A () BS01 ZN N/A N/A N/A N/A
    464557 6fei:A () BS02 ZN N/A N/A N/A N/A
    464558 6fei:A () BS03 D6K N/A N/A N/A N/A
    464559 6fei:B () BS01 ZN N/A N/A N/A N/A
    464560 6fei:B () BS02 ZN N/A N/A N/A N/A
    464561 6fek:A (2.3) BS01 ADN 2.7.10.1 GO:0004672 ... P07949 29434222
    464562 6fel:A (2.84) BS01 peptide ? GO:0002842 ... P61981 29649512
    464563 6fel:B (2.84) BS01 peptide ? GO:0002842 ... P61981 29649512
    464564 6fel:C (2.84) BS01 peptide ? GO:0002842 ... P61981 29649512
    464565 6fel:D (2.84) BS01 peptide ? GO:0002842 ... P61981 29649512
    464566 6feq:A (3.6) BS01 D6T 7.6.2.2 GO:0005515 ... Q9UNQ0 29610494
    464567 6feq:B (3.6) BS01 D6T 7.6.2.2 GO:0005515 ... Q9UNQ0 29610494
    464568 6fer:A (2.87) BS01 D6Q 2.7.10.1 GO:0004672 ... Q16832 30452219
    464569 6fer:B (2.87) BS01 D6Q 2.7.10.1 GO:0004672 ... Q16832 30452219
    464570 6fer:C (2.87) BS01 D6Q 2.7.10.1 GO:0004672 ... Q16832 30452219
    464571 6fer:D (2.87) BS01 D6Q 2.7.10.1 GO:0004672 ... Q16832 30452219
    464572 6fer:E (2.87) BS01 D6Q 2.7.10.1 GO:0004672 ... Q16832 30452219
    464573 6fer:F (2.87) BS01 D6Q 2.7.10.1 GO:0004672 ... Q16832 30452219
    464574 6fer:G (2.87) BS01 D6Q 2.7.10.1 GO:0004672 ... Q16832 30452219
    464575 6fer:H (2.87) BS01 D6Q 2.7.10.1 GO:0004672 ... Q16832 30452219
    464576 6fer:I (2.87) BS01 D6Q 2.7.10.1 GO:0004672 ... Q16832 30452219
    464577 6fer:J (2.87) BS01 D6Q 2.7.10.1 GO:0004672 ... Q16832 30452219
    464578 6fer:K (2.87) BS01 D6Q 2.7.10.1 GO:0004672 ... Q16832 30452219
    464579 6fer:L (2.87) BS01 D6Q 2.7.10.1 GO:0004672 ... Q16832 30452219
    464580 6fet:A (1.88) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    464581 6fet:A (1.88) BS02 D68 3.1.4.53 GO:0004114 ... Q08499 N/A BindingDB: Ki=0.301995nM
    464582 6fet:B (1.88) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    464583 6fet:B (1.88) BS02 D68 3.1.4.53 GO:0004114 ... Q08499 N/A BindingDB: Ki=0.301995nM
    464584 6fet:C (1.88) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    464585 6fet:C (1.88) BS02 D68 3.1.4.53 GO:0004114 ... Q08499 N/A BindingDB: Ki=0.301995nM
    464586 6fet:D (1.88) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    464587 6fet:D (1.88) BS02 D68 3.1.4.53 GO:0004114 ... Q08499 N/A BindingDB: Ki=0.301995nM
    464588 6few:A (1.44) BS01 D6W 2.7.10.1 GO:0004672 ... Q08345 30452219 MOAD: ic50=1.41uM
    464589 6fex:A (1.291) BS01 D6Z 2.7.10.1 GO:0004672 ... Q08345 30452219 MOAD: ic50=0.029uM
    BindingDB: IC50=25.6nM
    464590 6fey:A (3.48) BS01 peptide ? GO:0005576 ... Q09024 30242155
    464591 6fey:A (3.48) BS02 peptide ? GO:0005576 ... Q09024 30242155
    464592 6fey:B (3.48) BS01 peptide ? GO:0005576 ... Q09024 30242155
    464593 6fey:B (3.48) BS02 peptide ? GO:0005576 ... Q09024 30242155
    464594 6fey:B (3.48) BS03 peptide ? GO:0005576 ... Q09024 30242155
    464595 6fey:B (3.48) BS04 peptide ? GO:0005576 ... Q09024 30242155
    464596 6fey:C (3.48) BS01 peptide ? GO:0005576 ... Q09024 30242155
    464597 6fey:C (3.48) BS02 peptide ? GO:0005576 ... Q09024 30242155
    464598 6ff2:A (1.3) BS01 CU1 ? GO:0005507 ... Q2FV63 N/A
    464599 6ff2:A (1.3) BS02 CU1 ? GO:0005507 ... Q2FV63 N/A
    464600 6ff2:B (1.3) BS01 CU1 ? GO:0005507 ... Q2FV63 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).