SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    465201 6fkr:1D (3.2) BS09 MG ? GO:0002181 ... P60405 29526712
    465202 6fkr:1E (3.2) BS01 rna ? GO:0003735 ... Q5SHN8 29526712
    465203 6fkr:1E (3.2) BS02 MG ? GO:0003735 ... Q5SHN8 29526712
    465204 6fkr:1E (3.2) BS03 MG ? GO:0003735 ... Q5SHN8 29526712
    465205 6fkr:1E (3.2) BS04 MG ? GO:0003735 ... Q5SHN8 29526712
    465206 6fkr:1F (3.2) BS01 rna ? GO:0003735 ... Q5SHN9 29526712
    465207 6fkr:1F (3.2) BS02 MG ? GO:0003735 ... Q5SHN9 29526712
    465208 6fkr:1F (3.2) BS03 MG ? GO:0003735 ... Q5SHN9 29526712
    465209 6fkr:1F (3.2) BS04 MG ? GO:0003735 ... Q5SHN9 29526712
    465210 6fkr:1F (3.2) BS05 MG ? GO:0003735 ... Q5SHN9 29526712
    465211 6fkr:1F (3.2) BS06 MG ? GO:0003735 ... Q5SHN9 29526712
    465212 6fkr:1F (3.2) BS07 MG ? GO:0003735 ... Q5SHN9 29526712
    465213 6fkr:1F (3.2) BS08 MG ? GO:0003735 ... Q5SHN9 29526712
    465214 6fkr:1F (3.2) BS09 MG ? GO:0003735 ... Q5SHN9 29526712
    465215 6fkr:1F (3.2) BS10 MG ? GO:0003735 ... Q5SHN9 29526712
    465216 6fkr:1F (3.2) BS11 MG ? GO:0003735 ... Q5SHN9 29526712
    465217 6fkr:1F (3.2) BS12 MG ? GO:0003735 ... Q5SHN9 29526712
    465218 6fkr:1G (3.2) BS01 rna ? GO:0000049 ... Q5SHQ0 29526712
    465219 6fkr:1G (3.2) BS02 rna ? GO:0000049 ... Q5SHQ0 29526712
    465220 6fkr:1G (3.2) BS03 MG ? GO:0000049 ... Q5SHQ0 29526712
    465221 6fkr:1G (3.2) BS04 MG ? GO:0000049 ... Q5SHQ0 29526712
    465222 6fkr:1G (3.2) BS05 MG ? GO:0000049 ... Q5SHQ0 29526712
    465223 6fkr:1H (3.2) BS01 rna ? GO:0002181 ... P0DOY8 29526712
    465224 6fkr:1I (3.2) BS01 rna ? GO:0003735 ... Q5SLQ1 29526712
    465225 6fkr:1N (3.2) BS01 rna ? GO:0003729 ... P60488 29526712
    465226 6fkr:1O (3.2) BS01 rna ? GO:0003735 ... Q5SHP8 29526712
    465227 6fkr:1O (3.2) BS02 rna ? GO:0003735 ... Q5SHP8 29526712
    465228 6fkr:1P (3.2) BS01 rna ? GO:0003735 ... Q5SHQ7 29526712
    465229 6fkr:1P (3.2) BS02 MG ? GO:0003735 ... Q5SHQ7 29526712
    465230 6fkr:1P (3.2) BS03 MG ? GO:0003735 ... Q5SHQ7 29526712
    465231 6fkr:1P (3.2) BS04 MG ? GO:0003735 ... Q5SHQ7 29526712
    465232 6fkr:1Q (3.2) BS01 rna ? GO:0000049 ... P60489 29526712
    465233 6fkr:1Q (3.2) BS02 rna ? GO:0000049 ... P60489 29526712
    465234 6fkr:1Q (3.2) BS03 MG ? GO:0000049 ... P60489 29526712
    465235 6fkr:1Q (3.2) BS04 MG ? GO:0000049 ... P60489 29526712
    465236 6fkr:1Q (3.2) BS05 MG ? GO:0000049 ... P60489 29526712
    465237 6fkr:1R (3.2) BS01 rna ? GO:0003735 ... Q9Z9H5 29526712
    465238 6fkr:1R (3.2) BS02 MG ? GO:0003735 ... Q9Z9H5 29526712
    465239 6fkr:1R (3.2) BS03 MG ? GO:0003735 ... Q9Z9H5 29526712
    465240 6fkr:1S (3.2) BS01 rna ? GO:0003735 ... Q5SHQ4 29526712
    465241 6fkr:1S (3.2) BS02 rna ? GO:0003735 ... Q5SHQ4 29526712
    465242 6fkr:1T (3.2) BS01 rna ? GO:0003735 ... P60490 29526712
    465243 6fkr:1T (3.2) BS02 rna ? GO:0003735 ... P60490 29526712
    465244 6fkr:1U (3.2) BS01 rna ? GO:0000027 ... P60491 29526712
    465245 6fkr:1U (3.2) BS02 MG ? GO:0000027 ... P60491 29526712
    465246 6fkr:1U (3.2) BS03 MG ? GO:0000027 ... P60491 29526712
    465247 6fkr:1U (3.2) BS04 MG ? GO:0000027 ... P60491 29526712
    465248 6fkr:1U (3.2) BS05 MG ? GO:0000027 ... P60491 29526712
    465249 6fkr:1U (3.2) BS06 MG ? GO:0000027 ... P60491 29526712
    465250 6fkr:1V (3.2) BS01 rna ? GO:0003723 ... P60492 29526712
    465251 6fkr:1V (3.2) BS02 MG ? GO:0003723 ... P60492 29526712
    465252 6fkr:1V (3.2) BS03 MG ? GO:0003723 ... P60492 29526712
    465253 6fkr:1V (3.2) BS04 MG ? GO:0003723 ... P60492 29526712
    465254 6fkr:1W (3.2) BS01 rna ? GO:0003735 ... Q5SHP3 29526712
    465255 6fkr:1W (3.2) BS02 MG ? GO:0003735 ... Q5SHP3 29526712
    465256 6fkr:1X (3.2) BS01 rna ? GO:0003735 ... Q5SHP0 29526712
    465257 6fkr:1Y (3.2) BS01 rna ? GO:0003723 ... Q5SHP9 29526712
    465258 6fkr:1Y (3.2) BS02 ZN ? GO:0003723 ... Q5SHP9 29526712
    465259 6fkr:1Z (3.2) BS01 rna ? GO:0003723 ... Q5SHZ1 29526712
    465260 6fkr:1Z (3.2) BS02 rna ? GO:0003723 ... Q5SHZ1 29526712
    465261 6fkr:1b (3.2) BS01 rna ? GO:0003735 ... P80371 29526712
    465262 6fkr:1b (3.2) BS02 MG ? GO:0003735 ... P80371 29526712
    465263 6fkr:1c (3.2) BS01 rna ? GO:0003676 ... P80372 29526712
    465264 6fkr:1d (3.2) BS01 rna ? GO:0003723 ... P80373 29526712
    465265 6fkr:1d (3.2) BS02 SF4 ? GO:0003723 ... P80373 29526712
    465266 6fkr:1e (3.2) BS01 rna ? GO:0003723 ... Q5SHQ5 29526712
    465267 6fkr:1e (3.2) BS02 MG ? GO:0003723 ... Q5SHQ5 29526712
    465268 6fkr:1f (3.2) BS01 rna ? GO:0003735 ... Q5SLP8 29526712
    465269 6fkr:1g (3.2) BS01 rna ? GO:0000049 ... P17291 29526712
    465270 6fkr:1h (3.2) BS01 rna ? GO:0003735 ... P0DOY9 29526712
    465271 6fkr:1i (3.2) BS01 rna ? GO:0000049 ... P80374 29526712
    465272 6fkr:1j (3.2) BS01 rna ? GO:0000049 ... Q5SHN7 29526712
    465273 6fkr:1k (3.2) BS01 rna ? GO:0003735 ... P80376 29526712
    465274 6fkr:1l (3.2) BS01 rna ? GO:0000049 ... Q5SHN3 29526712
    465275 6fkr:1l (3.2) BS02 MG ? GO:0000049 ... Q5SHN3 29526712
    465276 6fkr:1m (3.2) BS01 rna ? GO:0000049 ... P80377 29526712
    465277 6fkr:1m (3.2) BS02 rna ? GO:0000049 ... P80377 29526712
    465278 6fkr:1m (3.2) BS03 MG ? GO:0000049 ... P80377 29526712
    465279 6fkr:1n (3.2) BS01 rna ? GO:0003735 ... P0DOY6 29526712
    465280 6fkr:1n (3.2) BS02 ZN ? GO:0003735 ... P0DOY6 29526712
    465281 6fkr:1n (3.2) BS03 MG ? GO:0003735 ... P0DOY6 29526712
    465282 6fkr:1o (3.2) BS01 rna ? GO:0003735 ... Q5SJ76 29526712
    465283 6fkr:1o (3.2) BS02 rna ? GO:0003735 ... Q5SJ76 29526712
    465284 6fkr:1p (3.2) BS01 rna ? GO:0003735 ... Q5SJH3 29526712
    465285 6fkr:1q (3.2) BS01 rna ? GO:0003735 ... P0DOY7 29526712
    465286 6fkr:1r (3.2) BS01 rna ? GO:0003735 ... Q5SLQ0 29526712
    465287 6fkr:1s (3.2) BS01 rna ? GO:0003723 ... Q5SHP2 29526712
    465288 6fkr:1t (3.2) BS01 rna ? GO:0003723 ... P80380 29526712
    465289 6fkr:1z (3.2) BS01 rna ? GO:0044238 ... P0AD49 29526712
    465290 6fkr:20 (3.2) BS01 rna ? GO:0003735 ... P60493 29526712
    465291 6fkr:20 (3.2) BS02 rna ? GO:0003735 ... P60493 29526712
    465292 6fkr:20 (3.2) BS03 MG ? GO:0003735 ... P60493 29526712
    465293 6fkr:20 (3.2) BS04 MG ? GO:0003735 ... P60493 29526712
    465294 6fkr:21 (3.2) BS01 rna ? GO:0003735 ... P60494 29526712
    465295 6fkr:22 (3.2) BS01 rna ? GO:0003735 ... Q5SHP6 29526712
    465296 6fkr:23 (3.2) BS01 rna ? GO:0003735 ... Q5SHQ6 29526712
    465297 6fkr:23 (3.2) BS02 rna ? GO:0003735 ... Q5SHQ6 29526712
    465298 6fkr:23 (3.2) BS03 MG ? GO:0003735 ... Q5SHQ6 29526712
    465299 6fkr:23 (3.2) BS04 MG ? GO:0003735 ... Q5SHQ6 29526712
    465300 6fkr:23 (3.2) BS05 MG ? GO:0003735 ... Q5SHQ6 29526712
    465301 6fkr:24 (3.2) BS01 rna ? GO:0003735 ... Q5SJE1 29526712
    465302 6fkr:24 (3.2) BS02 ZN ? GO:0003735 ... Q5SJE1 29526712
    465303 6fkr:25 (3.2) BS01 rna ? GO:0003735 ... P80339 29526712
    465304 6fkr:25 (3.2) BS02 MG ? GO:0003735 ... P80339 29526712
    465305 6fkr:25 (3.2) BS03 ZN ? GO:0003735 ... P80339 29526712
    465306 6fkr:26 (3.2) BS01 rna ? GO:0000049 ... P35871 29526712
    465307 6fkr:26 (3.2) BS02 ZN ? GO:0000049 ... P35871 29526712
    465308 6fkr:27 (3.2) BS01 rna ? GO:0003735 ... P80340 29526712
    465309 6fkr:27 (3.2) BS02 MG ? GO:0003735 ... P80340 29526712
    465310 6fkr:28 (3.2) BS01 rna ? GO:0003735 ... Q5SKU1 29526712
    465311 6fkr:28 (3.2) BS02 MG ? GO:0003735 ... Q5SKU1 29526712
    465312 6fkr:29 (3.2) BS01 rna ? GO:0003735 ... Q5SHR2 29526712
    465313 6fkr:29 (3.2) BS02 ZN ? GO:0003735 ... Q5SHR2 29526712
    465314 6fkr:2D (3.2) BS01 rna ? GO:0002181 ... P60405 29526712
    465315 6fkr:2D (3.2) BS02 MG ? GO:0002181 ... P60405 29526712
    465316 6fkr:2D (3.2) BS03 MG ? GO:0002181 ... P60405 29526712
    465317 6fkr:2D (3.2) BS04 MG ? GO:0002181 ... P60405 29526712
    465318 6fkr:2D (3.2) BS05 MG ? GO:0002181 ... P60405 29526712
    465319 6fkr:2D (3.2) BS06 MG ? GO:0002181 ... P60405 29526712
    465320 6fkr:2D (3.2) BS07 MG ? GO:0002181 ... P60405 29526712
    465321 6fkr:2D (3.2) BS08 MG ? GO:0002181 ... P60405 29526712
    465322 6fkr:2D (3.2) BS09 MG ? GO:0002181 ... P60405 29526712
    465323 6fkr:2D (3.2) BS10 MG ? GO:0002181 ... P60405 29526712
    465324 6fkr:2D (3.2) BS11 MG ? GO:0002181 ... P60405 29526712
    465325 6fkr:2D (3.2) BS12 MG ? GO:0002181 ... P60405 29526712
    465326 6fkr:2E (3.2) BS01 rna ? GO:0003735 ... Q5SHN8 29526712
    465327 6fkr:2E (3.2) BS02 MG ? GO:0003735 ... Q5SHN8 29526712
    465328 6fkr:2E (3.2) BS03 MG ? GO:0003735 ... Q5SHN8 29526712
    465329 6fkr:2E (3.2) BS04 MG ? GO:0003735 ... Q5SHN8 29526712
    465330 6fkr:2E (3.2) BS05 MG ? GO:0003735 ... Q5SHN8 29526712
    465331 6fkr:2F (3.2) BS01 rna ? GO:0003735 ... Q5SHN9 29526712
    465332 6fkr:2F (3.2) BS02 MG ? GO:0003735 ... Q5SHN9 29526712
    465333 6fkr:2F (3.2) BS03 MG ? GO:0003735 ... Q5SHN9 29526712
    465334 6fkr:2F (3.2) BS04 MG ? GO:0003735 ... Q5SHN9 29526712
    465335 6fkr:2F (3.2) BS05 MG ? GO:0003735 ... Q5SHN9 29526712
    465336 6fkr:2F (3.2) BS06 MG ? GO:0003735 ... Q5SHN9 29526712
    465337 6fkr:2F (3.2) BS07 MG ? GO:0003735 ... Q5SHN9 29526712
    465338 6fkr:2F (3.2) BS08 MG ? GO:0003735 ... Q5SHN9 29526712
    465339 6fkr:2F (3.2) BS09 MG ? GO:0003735 ... Q5SHN9 29526712
    465340 6fkr:2G (3.2) BS01 rna ? GO:0000049 ... Q5SHQ0 29526712
    465341 6fkr:2G (3.2) BS02 rna ? GO:0000049 ... Q5SHQ0 29526712
    465342 6fkr:2G (3.2) BS03 MG ? GO:0000049 ... Q5SHQ0 29526712
    465343 6fkr:2G (3.2) BS04 MG ? GO:0000049 ... Q5SHQ0 29526712
    465344 6fkr:2G (3.2) BS05 MG ? GO:0000049 ... Q5SHQ0 29526712
    465345 6fkr:2H (3.2) BS01 rna ? GO:0002181 ... P0DOY8 29526712
    465346 6fkr:2I (3.2) BS01 rna ? GO:0003735 ... Q5SLQ1 29526712
    465347 6fkr:2N (3.2) BS01 rna ? GO:0003729 ... P60488 29526712
    465348 6fkr:2O (3.2) BS01 rna ? GO:0003735 ... Q5SHP8 29526712
    465349 6fkr:2O (3.2) BS02 rna ? GO:0003735 ... Q5SHP8 29526712
    465350 6fkr:2P (3.2) BS01 rna ? GO:0003735 ... Q5SHQ7 29526712
    465351 6fkr:2P (3.2) BS02 MG ? GO:0003735 ... Q5SHQ7 29526712
    465352 6fkr:2Q (3.2) BS01 rna ? GO:0000049 ... P60489 29526712
    465353 6fkr:2Q (3.2) BS02 rna ? GO:0000049 ... P60489 29526712
    465354 6fkr:2Q (3.2) BS03 MG ? GO:0000049 ... P60489 29526712
    465355 6fkr:2Q (3.2) BS04 MG ? GO:0000049 ... P60489 29526712
    465356 6fkr:2Q (3.2) BS05 MG ? GO:0000049 ... P60489 29526712
    465357 6fkr:2R (3.2) BS01 rna ? GO:0003735 ... Q9Z9H5 29526712
    465358 6fkr:2R (3.2) BS02 MG ? GO:0003735 ... Q9Z9H5 29526712
    465359 6fkr:2R (3.2) BS03 MG ? GO:0003735 ... Q9Z9H5 29526712
    465360 6fkr:2S (3.2) BS01 rna ? GO:0003735 ... Q5SHQ4 29526712
    465361 6fkr:2S (3.2) BS02 rna ? GO:0003735 ... Q5SHQ4 29526712
    465362 6fkr:2T (3.2) BS01 rna ? GO:0003735 ... P60490 29526712
    465363 6fkr:2T (3.2) BS02 rna ? GO:0003735 ... P60490 29526712
    465364 6fkr:2U (3.2) BS01 rna ? GO:0000027 ... P60491 29526712
    465365 6fkr:2U (3.2) BS02 MG ? GO:0000027 ... P60491 29526712
    465366 6fkr:2U (3.2) BS03 MG ? GO:0000027 ... P60491 29526712
    465367 6fkr:2U (3.2) BS04 MG ? GO:0000027 ... P60491 29526712
    465368 6fkr:2U (3.2) BS05 MG ? GO:0000027 ... P60491 29526712
    465369 6fkr:2V (3.2) BS01 rna ? GO:0003723 ... P60492 29526712
    465370 6fkr:2V (3.2) BS02 MG ? GO:0003723 ... P60492 29526712
    465371 6fkr:2V (3.2) BS03 MG ? GO:0003723 ... P60492 29526712
    465372 6fkr:2V (3.2) BS04 MG ? GO:0003723 ... P60492 29526712
    465373 6fkr:2W (3.2) BS01 rna ? GO:0003735 ... Q5SHP3 29526712
    465374 6fkr:2X (3.2) BS01 rna ? GO:0003735 ... Q5SHP0 29526712
    465375 6fkr:2X (3.2) BS02 MG ? GO:0003735 ... Q5SHP0 29526712
    465376 6fkr:2Y (3.2) BS01 rna ? GO:0003723 ... Q5SHP9 29526712
    465377 6fkr:2Y (3.2) BS02 MG ? GO:0003723 ... Q5SHP9 29526712
    465378 6fkr:2Y (3.2) BS03 ZN ? GO:0003723 ... Q5SHP9 29526712
    465379 6fkr:2Z (3.2) BS01 rna ? GO:0003723 ... Q5SHZ1 29526712
    465380 6fkr:2Z (3.2) BS02 rna ? GO:0003723 ... Q5SHZ1 29526712
    465381 6fkr:2b (3.2) BS01 rna ? GO:0003735 ... P80371 29526712
    465382 6fkr:2b (3.2) BS02 MG ? GO:0003735 ... P80371 29526712
    465383 6fkr:2c (3.2) BS01 rna ? GO:0003676 ... P80372 29526712
    465384 6fkr:2d (3.2) BS01 rna ? GO:0003723 ... P80373 29526712
    465385 6fkr:2d (3.2) BS02 SF4 ? GO:0003723 ... P80373 29526712
    465386 6fkr:2d (3.2) BS03 MG ? GO:0003723 ... P80373 29526712
    465387 6fkr:2e (3.2) BS01 rna ? GO:0003723 ... Q5SHQ5 29526712
    465388 6fkr:2f (3.2) BS01 rna ? GO:0003735 ... Q5SLP8 29526712
    465389 6fkr:2f (3.2) BS02 MG ? GO:0003735 ... Q5SLP8 29526712
    465390 6fkr:2g (3.2) BS01 rna ? GO:0000049 ... P17291 29526712
    465391 6fkr:2h (3.2) BS01 rna ? GO:0003735 ... P0DOY9 29526712
    465392 6fkr:2i (3.2) BS01 rna ? GO:0000049 ... P80374 29526712
    465393 6fkr:2j (3.2) BS01 rna ? GO:0000049 ... Q5SHN7 29526712
    465394 6fkr:2k (3.2) BS01 rna ? GO:0003735 ... P80376 29526712
    465395 6fkr:2k (3.2) BS02 MG ? GO:0003735 ... P80376 29526712
    465396 6fkr:2l (3.2) BS01 rna ? GO:0000049 ... Q5SHN3 29526712
    465397 6fkr:2l (3.2) BS02 MG ? GO:0000049 ... Q5SHN3 29526712
    465398 6fkr:2m (3.2) BS01 rna ? GO:0000049 ... P80377 29526712
    465399 6fkr:2m (3.2) BS02 MG ? GO:0000049 ... P80377 29526712
    465400 6fkr:2n (3.2) BS01 rna ? GO:0003735 ... P0DOY6 29526712

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).