SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    466601 6ftd:B (1.4) BS01 LBV 2.7.13.3 GO:0006355 ... Q9RZA4 29938729
    466602 6fte:B (1.52) BS01 PLP ? GO:0003824 ... A0A0D2C5V9 N/A
    466603 6ftf:B (1.09152) BS01 7CI ? GO:0001932 ... Q4DSV5 30926779 MOAD: Kd=57nM
    466604 6ftf:B (1.09152) BS02 7CI ? GO:0001932 ... Q4DSV5 30926779 MOAD: Kd=57nM
    466605 6ftg:5 (9.1) BS01 9UB 2.4.99.18 GO:0004576 ... F1PJP5 29519914
    466606 6ftg:A (9.1) BS01 rna ? GO:0002181 ... G1TT27 29519914
    466607 6ftg:B (9.1) BS01 rna ? GO:0003723 ... G1TL06 29519914
    466608 6ftg:C (9.1) BS01 rna ? GO:0003735 ... G1SVW5 29519914
    466609 6ftg:C (9.1) BS02 rna ? GO:0003735 ... G1SVW5 29519914
    466610 6ftg:D (9.1) BS01 rna ? GO:0000027 ... P19949 29519914
    466611 6ftg:D (9.1) BS02 rna ? GO:0000027 ... P19949 29519914
    466612 6ftg:E (9.1) BS01 rna ? GO:0003735 ... G1TG04 29519914
    466613 6ftg:F (9.1) BS01 rna ? GO:0000463 ... G1SV32 29519914
    466614 6ftg:F (9.1) BS02 rna ? GO:0000463 ... G1SV32 29519914
    466615 6ftg:G (9.1) BS01 rna ? GO:0003723 ... G1STW0 29519914
    466616 6ftg:G (9.1) BS02 rna ? GO:0003723 ... G1STW0 29519914
    466617 6ftg:H (9.1) BS01 rna ? GO:0002181 ... G1SWI6 29519914
    466618 6ftg:I (9.1) BS01 rna ? GO:0003735 ... B7NZQ2 29519914
    466619 6ftg:I (9.1) BS02 rna ? GO:0003735 ... B7NZQ2 29519914
    466620 6ftg:J (9.1) BS01 rna ? GO:0003735 ... G1TUB8 29519914
    466621 6ftg:J (9.1) BS02 rna ? GO:0003735 ... G1TUB8 29519914
    466622 6ftg:L (9.1) BS01 rna N/A GO:0003735 ... N/A 29519914
    466623 6ftg:L (9.1) BS02 rna N/A GO:0003735 ... N/A 29519914
    466624 6ftg:M (9.1) BS01 rna ? GO:0003723 ... G1SZ12 29519914
    466625 6ftg:N (9.1) BS01 rna ? GO:0002181 ... G1T0C1 29519914
    466626 6ftg:N (9.1) BS02 rna ? GO:0002181 ... G1T0C1 29519914
    466627 6ftg:O (9.1) BS01 rna N/A GO:0003735 ... N/A 29519914
    466628 6ftg:P (9.1) BS01 rna ? GO:0003735 ... G1SCJ6 29519914
    466629 6ftg:P (9.1) BS02 rna ? GO:0003735 ... G1SCJ6 29519914
    466630 6ftg:Q (9.1) BS01 rna N/A GO:0003735 ... N/A 29519914
    466631 6ftg:R (9.1) BS01 rna N/A GO:0003723 ... N/A 29519914
    466632 6ftg:S (9.1) BS01 rna N/A GO:0003735 ... N/A 29519914
    466633 6ftg:S (9.1) BS02 rna N/A GO:0003735 ... N/A 29519914
    466634 6ftg:T (9.1) BS01 rna ? GO:0003735 ... G1SHQ2 29519914
    466635 6ftg:T (9.1) BS02 rna ? GO:0003735 ... G1SHQ2 29519914
    466636 6ftg:U (9.1) BS01 rna N/A GO:0003735 ... N/A 29519914
    466637 6ftg:V (9.1) BS01 rna ? GO:0003735 ... G1T6D1 29519914
    466638 6ftg:W (9.1) BS01 rna ? GO:0003735 ... G1SE28 29519914
    466639 6ftg:X (9.1) BS01 rna ? GO:0003735 ... G1SE76 29519914
    466640 6ftg:X (9.1) BS02 rna ? GO:0003735 ... G1SE76 29519914
    466641 6ftg:Y (9.1) BS01 rna ? GO:0003723 ... G1SQH0 29519914
    466642 6ftg:Y (9.1) BS02 rna ? GO:0003723 ... G1SQH0 29519914
    466643 6ftg:Z (9.1) BS01 rna ? GO:0003735 ... G1TXF6 29519914
    466644 6ftg:a (9.1) BS01 rna ? GO:0003735 ... G1SNY0 29519914
    466645 6ftg:b (9.1) BS01 rna ? GO:0003735 ... G1SGR6 29519914
    466646 6ftg:c (9.1) BS01 rna N/A GO:0003723 ... N/A 29519914
    466647 6ftg:d (9.1) BS01 rna ? GO:0003735 ... G1SHG0 29519914
    466648 6ftg:e (9.1) BS01 rna ? GO:0003735 ... G1TUN8 29519914
    466649 6ftg:f (9.1) BS01 rna ? GO:0000049 ... G1SF08 29519914
    466650 6ftg:g (9.1) BS01 rna ? GO:0003735 ... G1TXG5 29519914
    466651 6ftg:g (9.1) BS02 ZN ? GO:0003735 ... G1TXG5 29519914
    466652 6ftg:h (9.1) BS01 rna ? GO:0000463 ... G1SIT5 29519914
    466653 6ftg:h (9.1) BS02 rna ? GO:0000463 ... G1SIT5 29519914
    466654 6ftg:i (9.1) BS01 rna ? GO:0003735 ... G1TTQ5 29519914
    466655 6ftg:j (9.1) BS01 rna ? GO:0003735 ... U3KPD5 29519914
    466656 6ftg:j (9.1) BS02 rna ? GO:0003735 ... U3KPD5 29519914
    466657 6ftg:j (9.1) BS03 ZN ? GO:0003735 ... U3KPD5 29519914
    466658 6ftg:k (9.1) BS01 rna N/A GO:0003735 ... N/A 29519914
    466659 6ftg:l (9.1) BS01 rna ? GO:0003735 ... G1SYU7 29519914
    466660 6ftg:l (9.1) BS02 rna ? GO:0003735 ... G1SYU7 29519914
    466661 6ftg:m (9.1) BS01 rna N/A GO:0003735 ... N/A 29519914
    466662 6ftg:m (9.1) BS02 ZN N/A GO:0003735 ... N/A 29519914
    466663 6ftg:o (9.1) BS01 rna ? GO:0003735 ... G1T040 29519914
    466664 6ftg:o (9.1) BS02 ZN ? GO:0003735 ... G1T040 29519914
    466665 6ftg:p (9.1) BS01 rna ? GO:0003735 ... G1SY53 29519914
    466666 6ftg:p (9.1) BS02 ZN ? GO:0003735 ... G1SY53 29519914
    466667 6ftg:r (9.1) BS01 rna ? GO:0003735 ... G1U7L1 29519914
    466668 6ftg:s (9.1) BS01 rna N/A N/A N/A 29519914
    466669 6ftg:t (9.1) BS01 rna ? GO:0003723 ... G1SMR7 29519914
    466670 6ftg:x (9.1) BS01 rna ? GO:0005048 ... P38377 29519914
    466671 6ftg:x (9.1) BS02 peptide ? GO:0005048 ... P38377 29519914
    466672 6fti:1 (4.2) BS01 rna ? GO:0050825 ... E2RQ08 29519914
    466673 6fti:3 (4.2) BS01 peptide ? GO:0006486 ... P86218 29519914
    466674 6fti:5 (4.2) BS01 9UB 2.4.99.18 GO:0004576 ... F1PJP5 29519914
    466675 6fti:A (4.2) BS01 rna ? GO:0002181 ... G1TT27 29519914
    466676 6fti:B (4.2) BS01 rna ? GO:0003723 ... G1TL06 29519914
    466677 6fti:C (4.2) BS01 rna ? GO:0003735 ... G1SVW5 29519914
    466678 6fti:C (4.2) BS02 rna ? GO:0003735 ... G1SVW5 29519914
    466679 6fti:D (4.2) BS01 rna ? GO:0000027 ... P19949 29519914
    466680 6fti:D (4.2) BS02 rna ? GO:0000027 ... P19949 29519914
    466681 6fti:E (4.2) BS01 rna ? GO:0003735 ... G1TG04 29519914
    466682 6fti:F (4.2) BS01 rna ? GO:0000463 ... G1SV32 29519914
    466683 6fti:F (4.2) BS02 rna ? GO:0000463 ... G1SV32 29519914
    466684 6fti:G (4.2) BS01 rna ? GO:0003723 ... G1STW0 29519914
    466685 6fti:G (4.2) BS02 rna ? GO:0003723 ... G1STW0 29519914
    466686 6fti:H (4.2) BS01 rna ? GO:0002181 ... G1SWI6 29519914
    466687 6fti:I (4.2) BS01 rna ? GO:0003735 ... B7NZQ2 29519914
    466688 6fti:I (4.2) BS02 rna ? GO:0003735 ... B7NZQ2 29519914
    466689 6fti:J (4.2) BS01 rna ? GO:0003735 ... G1TUB8 29519914
    466690 6fti:J (4.2) BS02 rna ? GO:0003735 ... G1TUB8 29519914
    466691 6fti:J (4.2) BS03 rna ? GO:0003735 ... G1TUB8 29519914
    466692 6fti:L (4.2) BS01 rna N/A GO:0003735 ... N/A 29519914
    466693 6fti:L (4.2) BS02 rna N/A GO:0003735 ... N/A 29519914
    466694 6fti:M (4.2) BS01 rna ? GO:0003723 ... G1SZ12 29519914
    466695 6fti:N (4.2) BS01 rna ? GO:0002181 ... G1T0C1 29519914
    466696 6fti:N (4.2) BS02 rna ? GO:0002181 ... G1T0C1 29519914
    466697 6fti:O (4.2) BS01 rna N/A GO:0003735 ... N/A 29519914
    466698 6fti:P (4.2) BS01 rna ? GO:0003735 ... G1SCJ6 29519914
    466699 6fti:P (4.2) BS02 rna ? GO:0003735 ... G1SCJ6 29519914
    466700 6fti:Q (4.2) BS01 rna N/A GO:0003735 ... N/A 29519914
    466701 6fti:R (4.2) BS01 rna N/A GO:0003723 ... N/A 29519914
    466702 6fti:S (4.2) BS01 rna N/A GO:0003735 ... N/A 29519914
    466703 6fti:S (4.2) BS02 rna N/A GO:0003735 ... N/A 29519914
    466704 6fti:T (4.2) BS01 rna ? GO:0003735 ... G1SHQ2 29519914
    466705 6fti:T (4.2) BS02 rna ? GO:0003735 ... G1SHQ2 29519914
    466706 6fti:U (4.2) BS01 rna N/A GO:0003735 ... N/A 29519914
    466707 6fti:V (4.2) BS01 rna ? GO:0003735 ... G1T6D1 29519914
    466708 6fti:W (4.2) BS01 rna ? GO:0003735 ... G1SE28 29519914
    466709 6fti:X (4.2) BS01 rna ? GO:0003735 ... G1SE76 29519914
    466710 6fti:X (4.2) BS02 rna ? GO:0003735 ... G1SE76 29519914
    466711 6fti:Y (4.2) BS01 rna ? GO:0003723 ... G1SQH0 29519914
    466712 6fti:Y (4.2) BS02 rna ? GO:0003723 ... G1SQH0 29519914
    466713 6fti:Z (4.2) BS01 rna ? GO:0003735 ... G1TXF6 29519914
    466714 6fti:a (4.2) BS01 rna ? GO:0003735 ... G1SNY0 29519914
    466715 6fti:b (4.2) BS01 rna ? GO:0003735 ... G1SGR6 29519914
    466716 6fti:c (4.2) BS01 rna N/A GO:0003723 ... N/A 29519914
    466717 6fti:d (4.2) BS01 rna ? GO:0003735 ... G1SHG0 29519914
    466718 6fti:e (4.2) BS01 rna ? GO:0003735 ... G1TUN8 29519914
    466719 6fti:f (4.2) BS01 rna ? GO:0000049 ... G1SF08 29519914
    466720 6fti:g (4.2) BS01 rna ? GO:0003735 ... G1TXG5 29519914
    466721 6fti:g (4.2) BS02 ZN ? GO:0003735 ... G1TXG5 29519914
    466722 6fti:h (4.2) BS01 rna ? GO:0000463 ... G1SIT5 29519914
    466723 6fti:h (4.2) BS02 rna ? GO:0000463 ... G1SIT5 29519914
    466724 6fti:i (4.2) BS01 rna ? GO:0003735 ... G1TTQ5 29519914
    466725 6fti:j (4.2) BS01 rna ? GO:0003735 ... U3KPD5 29519914
    466726 6fti:j (4.2) BS02 rna ? GO:0003735 ... U3KPD5 29519914
    466727 6fti:j (4.2) BS03 ZN ? GO:0003735 ... U3KPD5 29519914
    466728 6fti:k (4.2) BS01 rna N/A GO:0003735 ... N/A 29519914
    466729 6fti:l (4.2) BS01 rna ? GO:0003735 ... G1SYU7 29519914
    466730 6fti:l (4.2) BS02 rna ? GO:0003735 ... G1SYU7 29519914
    466731 6fti:m (4.2) BS01 rna N/A GO:0003735 ... N/A 29519914
    466732 6fti:m (4.2) BS02 ZN N/A GO:0003735 ... N/A 29519914
    466733 6fti:o (4.2) BS01 rna ? GO:0003735 ... G1T040 29519914
    466734 6fti:o (4.2) BS02 rna ? GO:0003735 ... G1T040 29519914
    466735 6fti:o (4.2) BS03 ZN ? GO:0003735 ... G1T040 29519914
    466736 6fti:p (4.2) BS01 rna ? GO:0003735 ... G1SY53 29519914
    466737 6fti:p (4.2) BS02 ZN ? GO:0003735 ... G1SY53 29519914
    466738 6fti:r (4.2) BS01 rna ? GO:0003735 ... G1U7L1 29519914
    466739 6fti:s (4.2) BS01 rna N/A N/A N/A 29519914
    466740 6fti:t (4.2) BS01 rna ? GO:0003723 ... G1SMR7 29519914
    466741 6fti:x (4.2) BS01 rna ? GO:0005048 ... P38377 29519914
    466742 6fti:x (4.2) BS02 peptide ? GO:0005048 ... P38377 29519914
    466743 6fti:x (4.2) BS03 peptide ? GO:0005048 ... P38377 29519914
    466744 6fti:y (4.2) BS01 peptide ? GO:0005543 ... P60058 29519914
    466745 6fti:y (4.2) BS02 peptide ? GO:0005543 ... P60058 29519914
    466746 6ftj:1 (4.7) BS01 rna ? GO:0006486 ... E2RQ08 29519914
    466747 6ftj:5 (4.7) BS01 9UB 2.4.99.18 GO:0004576 ... F1PJP5 29519914
    466748 6ftj:A (4.7) BS01 rna ? GO:0002181 ... G1TT27 29519914
    466749 6ftj:B (4.7) BS01 rna ? GO:0003723 ... G1TL06 29519914
    466750 6ftj:C (4.7) BS01 rna ? GO:0003735 ... G1SVW5 29519914
    466751 6ftj:C (4.7) BS02 rna ? GO:0003735 ... G1SVW5 29519914
    466752 6ftj:D (4.7) BS01 rna ? GO:0000027 ... P19949 29519914
    466753 6ftj:D (4.7) BS02 rna ? GO:0000027 ... P19949 29519914
    466754 6ftj:E (4.7) BS01 rna ? GO:0003735 ... G1TG04 29519914
    466755 6ftj:F (4.7) BS01 rna ? GO:0000463 ... G1SV32 29519914
    466756 6ftj:F (4.7) BS02 rna ? GO:0000463 ... G1SV32 29519914
    466757 6ftj:G (4.7) BS01 rna ? GO:0003723 ... G1STW0 29519914
    466758 6ftj:G (4.7) BS02 rna ? GO:0003723 ... G1STW0 29519914
    466759 6ftj:H (4.7) BS01 rna ? GO:0002181 ... G1SWI6 29519914
    466760 6ftj:I (4.7) BS01 rna ? GO:0003735 ... B7NZQ2 29519914
    466761 6ftj:I (4.7) BS02 rna ? GO:0003735 ... B7NZQ2 29519914
    466762 6ftj:J (4.7) BS01 rna ? GO:0003735 ... G1TUB8 29519914
    466763 6ftj:J (4.7) BS02 rna ? GO:0003735 ... G1TUB8 29519914
    466764 6ftj:L (4.7) BS01 rna N/A GO:0003735 ... N/A 29519914
    466765 6ftj:L (4.7) BS02 rna N/A GO:0003735 ... N/A 29519914
    466766 6ftj:M (4.7) BS01 rna ? GO:0003723 ... G1SZ12 29519914
    466767 6ftj:N (4.7) BS01 rna ? GO:0002181 ... G1T0C1 29519914
    466768 6ftj:N (4.7) BS02 rna ? GO:0002181 ... G1T0C1 29519914
    466769 6ftj:O (4.7) BS01 rna N/A GO:0003735 ... N/A 29519914
    466770 6ftj:P (4.7) BS01 rna ? GO:0003735 ... G1SCJ6 29519914
    466771 6ftj:P (4.7) BS02 rna ? GO:0003735 ... G1SCJ6 29519914
    466772 6ftj:Q (4.7) BS01 rna N/A GO:0003735 ... N/A 29519914
    466773 6ftj:R (4.7) BS01 rna N/A GO:0003723 ... N/A 29519914
    466774 6ftj:S (4.7) BS01 rna N/A GO:0003735 ... N/A 29519914
    466775 6ftj:S (4.7) BS02 rna N/A GO:0003735 ... N/A 29519914
    466776 6ftj:T (4.7) BS01 rna ? GO:0003735 ... G1SHQ2 29519914
    466777 6ftj:T (4.7) BS02 rna ? GO:0003735 ... G1SHQ2 29519914
    466778 6ftj:U (4.7) BS01 rna ? GO:0003735 ... G1TSG1 29519914
    466779 6ftj:V (4.7) BS01 rna ? GO:0003735 ... G1T6D1 29519914
    466780 6ftj:W (4.7) BS01 rna ? GO:0003735 ... G1SE28 29519914
    466781 6ftj:X (4.7) BS01 rna ? GO:0003735 ... G1SE76 29519914
    466782 6ftj:X (4.7) BS02 rna ? GO:0003735 ... G1SE76 29519914
    466783 6ftj:Y (4.7) BS01 rna ? GO:0003723 ... G1SQH0 29519914
    466784 6ftj:Y (4.7) BS02 rna ? GO:0003723 ... G1SQH0 29519914
    466785 6ftj:Z (4.7) BS01 rna ? GO:0003735 ... G1TXF6 29519914
    466786 6ftj:a (4.7) BS01 rna ? GO:0003735 ... G1SNY0 29519914
    466787 6ftj:b (4.7) BS01 rna ? GO:0003735 ... G1SGR6 29519914
    466788 6ftj:c (4.7) BS01 rna N/A GO:0003723 ... N/A 29519914
    466789 6ftj:d (4.7) BS01 rna ? GO:0003735 ... G1SHG0 29519914
    466790 6ftj:e (4.7) BS01 rna ? GO:0003735 ... G1TUN8 29519914
    466791 6ftj:f (4.7) BS01 rna ? GO:0000049 ... G1SF08 29519914
    466792 6ftj:g (4.7) BS01 rna ? GO:0003735 ... G1TXG5 29519914
    466793 6ftj:g (4.7) BS02 ZN ? GO:0003735 ... G1TXG5 29519914
    466794 6ftj:h (4.7) BS01 rna ? GO:0000463 ... G1SIT5 29519914
    466795 6ftj:h (4.7) BS02 rna ? GO:0000463 ... G1SIT5 29519914
    466796 6ftj:i (4.7) BS01 rna ? GO:0003735 ... G1TTQ5 29519914
    466797 6ftj:j (4.7) BS01 rna ? GO:0003735 ... U3KPD5 29519914
    466798 6ftj:j (4.7) BS02 rna ? GO:0003735 ... U3KPD5 29519914
    466799 6ftj:j (4.7) BS03 ZN ? GO:0003735 ... U3KPD5 29519914
    466800 6ftj:k (4.7) BS01 rna N/A GO:0003735 ... N/A 29519914

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).