SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    47201 1rgr:A (-1.00) BS02 BAL ? N/A P31016 15123241
    47202 1rgs:A (2.8) BS01 CMP 2.7.1.37 GO:0001932 ... P00514 7638597
    47203 1rgs:A (2.8) BS02 CMP 2.7.1.37 GO:0001932 ... P00514 7638597
    47204 1rgt:A (2.0) BS01 dna 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    47205 1rgt:A (2.0) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    47206 1rgt:A (2.0) BS03 OTS 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    47207 1rgt:A (2.0) BS04 OTR 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    47208 1rgt:B (2.0) BS01 dna 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    47209 1rgt:B (2.0) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    47210 1rgt:B (2.0) BS03 OTS 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    47211 1rgt:B (2.0) BS04 OTR 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    47212 1rgu:A (2.22) BS01 dna 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    47213 1rgu:A (2.22) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    47214 1rgu:A (2.22) BS03 OTS 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    47215 1rgu:B (2.22) BS01 dna 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    47216 1rgu:B (2.22) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    47217 1rgu:B (2.22) BS03 OTS 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    47218 1rgv:A (2.9) BS01 SF4 ? N/A O88151 14747735
    47219 1rgv:A (2.9) BS02 SF4 ? N/A O88151 14747735
    47220 1rgy:A (1.52) BS01 PTX 3.5.2.6 GO:0008800 ... P05193 14660590
    47221 1rgz:A (1.37) BS01 PTX 3.5.2.6 GO:0008800 ... P05364 14660590
    47222 1rh0:A (2.3) BS01 dna 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    47223 1rh0:A (2.3) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    47224 1rh0:A (2.3) BS03 OTS 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    47225 1rh0:B (2.3) BS01 dna 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    47226 1rh0:B (2.3) BS02 VO4 3.1.4.- GO:0005634 ... Q9NUW8 14761185 BindingDB: IC50=4000nM
    47227 1rh0:B (2.3) BS03 OTS 3.1.4.- GO:0005634 ... Q9NUW8 14761185
    47228 1rh3:A (2.4) BS01 MTX 1.5.1.3 GO:0004146 ... P0ABQ4 9012674 BindingDB: IC50=8.8nM, EC50=1nM
    47229 1rh3:A (2.4) BS02 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 9012674
    47230 1rh6:B (1.7) BS01 dna ? GO:0003677 ... P03699 15066428
    47231 1rh6:B (1.7) BS02 dna ? GO:0003677 ... P03699 15066428
    47232 1rhc:A (1.8) BS01 F42 1.1.99.- GO:0016705 ... O93734 15016352
    47233 1rhc:A (1.8) BS02 ACN 1.1.99.- GO:0016705 ... O93734 15016352
    47234 1rhj:A (2.2) BS01 PZN 3.4.22.56 GO:0004197 ... P42574 15115390
    47235 1rhj:B (2.2) BS01 PZN 3.4.22.56 GO:0004197 ... P42574 15115390
    47236 1rhj:C (2.2) BS01 PZN 3.4.22.56 GO:0004197 ... P42574 15115390
    47237 1rhj:D (2.2) BS01 PZN 3.4.22.56 GO:0004197 ... P42574 15115390
    47238 1rhk:A (2.5) BS01 peptide 3.4.22.56 GO:0004197 ... P42574 15115390
    47239 1rhk:B (2.5) BS01 peptide 3.4.22.56 GO:0004197 ... P42574 15115390
    47240 1rhl:A (1.95) BS01 2GP 4.6.1.24 GO:0001411 ... P00651 10600109
    47241 1rhm:A (2.5) BS01 NA4 3.4.22.56 GO:0004197 ... P42574 15115390 BindingDB: IC50=1735nM
    47242 1rhm:B (2.5) BS01 NA4 3.4.22.56 GO:0004197 ... P42574 15115390 BindingDB: IC50=1735nM
    47243 1rhm:C (2.5) BS01 NA4 3.4.22.56 GO:0004197 ... P42574 15115390 BindingDB: IC50=1735nM
    47244 1rhm:D (2.5) BS01 NA4 3.4.22.56 GO:0004197 ... P42574 15115390 BindingDB: IC50=1735nM
    47245 1rhq:A (3.0) BS01 0ZZ 3.4.22.56 GO:0004197 ... P42574 15115390
    47246 1rhq:B (3.0) BS01 0ZZ 3.4.22.56 GO:0004197 ... P42574 15115390
    47247 1rhq:D (3.0) BS01 0ZZ 3.4.22.56 GO:0004197 ... P42574 15115390
    47248 1rhq:E (3.0) BS01 0ZZ 3.4.22.56 GO:0004197 ... P42574 15115390
    47249 1rhr:A (3.0) BS01 CNE 3.4.22.56 GO:0004197 ... P42574 15115390 BindingDB: IC50=8nM
    47250 1rhr:B (3.0) BS01 CNE 3.4.22.56 GO:0004197 ... P42574 15115390 BindingDB: IC50=8nM
    47251 1rhu:A (2.51) BS01 3CY 3.4.22.56 GO:0004197 ... P42574 15115390 BindingDB: IC50=3nM
    47252 1rhu:B (2.51) BS01 3CY 3.4.22.56 GO:0004197 ... P42574 15115390 BindingDB: IC50=3nM
    47253 1rhy:B (2.3) BS01 GOL 4.2.1.19 GO:0000105 ... P0CO22 14724278
    47254 1ri1:A (2.5) BS01 SAH 2.1.1.56 GO:0004482 ... Q8SR66 14731396
    47255 1ri1:A (2.5) BS02 GTG 2.1.1.56 GO:0004482 ... Q8SR66 14731396
    47256 1ri2:A (2.7) BS01 GTG 2.1.1.56 GO:0004482 ... Q8SR66 14731396
    47257 1ri3:A (2.5) BS01 SAH 2.1.1.56 GO:0004482 ... Q8SR66 14731396
    47258 1ri4:A (2.4) BS01 SAM 2.1.1.56 GO:0004482 ... Q8SR66 14731396
    47259 1rib:A (2.2) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 8331655
    47260 1rib:B (2.2) BS01 FEO 1.17.4.1 GO:0004748 ... P69924 8331655
    47261 1rie:A (1.5) BS01 FES 7.1.1.8 GO:0008121 ... P13272 8736555
    47262 1rin:A (2.6) BS01 MAN ? GO:0030246 ... P02867 8486683
    47263 1rin:A (2.6) BS02 MN ? GO:0030246 ... P02867 8486683
    47264 1rin:A (2.6) BS03 CA ? GO:0030246 ... P02867 8486683
    47265 1rin:B (2.6) BS01 MAN ? GO:0030246 ... P02867 8486683
    47266 1rin:C (2.6) BS01 MAN ? GO:0030246 ... P02867 8486683
    47267 1rin:C (2.6) BS02 MN ? GO:0030246 ... P02867 8486683
    47268 1rin:C (2.6) BS03 CA ? GO:0030246 ... P02867 8486683
    47269 1rin:D (2.6) BS01 MAN ? GO:0030246 ... P02867 8486683
    47270 1rio:A (2.3) BS01 dna ? GO:0003677 ... P03034 14731393
    47271 1rio:A (2.3) BS02 dna ? GO:0003677 ... P03034 14731393
    47272 1rio:B (2.3) BS01 dna ? GO:0003677 ... P03034 14731393
    47273 1rio:B (2.3) BS02 dna ? GO:0003677 ... P03034 14731393
    47274 1rio:H (2.3) BS01 dna ? GO:0003700 ... Q9EZJ8 14731393
    47275 1rio:H (2.3) BS02 dna ? GO:0003700 ... Q9EZJ8 14731393
    47276 1rir:A (2.9) BS01 CA ? GO:0030246 ... P02872 15823017
    47277 1rir:A (2.9) BS02 MN ? GO:0030246 ... P02872 15823017
    47278 1rir:A (2.9) BS03 SFP ? GO:0030246 ... P02872 15823017
    47279 1rir:A (2.9) BS04 SFP ? GO:0030246 ... P02872 15823017
    47280 1rir:B (2.9) BS01 CA ? GO:0030246 ... P02872 15823017
    47281 1rir:B (2.9) BS02 MN ? GO:0030246 ... P02872 15823017
    47282 1rir:B (2.9) BS03 SFP ? GO:0030246 ... P02872 15823017
    47283 1rir:B (2.9) BS04 SFP ? GO:0030246 ... P02872 15823017
    47284 1rir:C (2.9) BS01 CA ? GO:0030246 ... P02872 15823017
    47285 1rir:C (2.9) BS02 MN ? GO:0030246 ... P02872 15823017
    47286 1rir:C (2.9) BS03 SFP ? GO:0030246 ... P02872 15823017
    47287 1rir:D (2.9) BS01 CA ? GO:0030246 ... P02872 15823017
    47288 1rir:D (2.9) BS02 MN ? GO:0030246 ... P02872 15823017
    47289 1rir:D (2.9) BS03 SFP ? GO:0030246 ... P02872 15823017
    47290 1rit:A (2.85) BS01 SFP ? GO:0030246 ... P02872 15823017
    47291 1rit:A (2.85) BS02 CA ? GO:0030246 ... P02872 15823017
    47292 1rit:A (2.85) BS03 MN ? GO:0030246 ... P02872 15823017
    47293 1rit:A (2.85) BS04 SFP ? GO:0030246 ... P02872 15823017
    47294 1rit:B (2.85) BS01 SFP ? GO:0030246 ... P02872 15823017
    47295 1rit:B (2.85) BS02 SFP ? GO:0030246 ... P02872 15823017
    47296 1rit:B (2.85) BS03 CA ? GO:0030246 ... P02872 15823017
    47297 1rit:B (2.85) BS04 MN ? GO:0030246 ... P02872 15823017
    47298 1rit:C (2.85) BS01 GAL ? GO:0030246 ... P02872 15823017
    47299 1rit:C (2.85) BS02 SFP ? GO:0030246 ... P02872 15823017
    47300 1rit:C (2.85) BS03 SFP ? GO:0030246 ... P02872 15823017
    47301 1rit:C (2.85) BS04 CA ? GO:0030246 ... P02872 15823017
    47302 1rit:C (2.85) BS05 MN ? GO:0030246 ... P02872 15823017
    47303 1rit:D (2.85) BS01 BGC ? GO:0030246 ... P02872 15823017
    47304 1rit:D (2.85) BS02 GAL ? GO:0030246 ... P02872 15823017
    47305 1rit:D (2.85) BS03 SFP ? GO:0030246 ... P02872 15823017
    47306 1rit:D (2.85) BS04 CA ? GO:0030246 ... P02872 15823017
    47307 1rit:D (2.85) BS05 MN ? GO:0030246 ... P02872 15823017
    47308 1riu:H (2.0) BS01 RBE N/A N/A N/A N/A
    47309 1riu:L (2.0) BS01 RBE N/A N/A N/A N/A
    47310 1riv:H (2.2) BS01 OBE N/A N/A N/A N/A
    47311 1riv:L (2.2) BS01 OBE N/A N/A N/A N/A
    47312 1riw:B (2.04) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 15137772
    47313 1riw:B (2.04) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 15137772
    47314 1riw:B (2.04) BS03 OSC 3.4.21.5 GO:0004252 ... P00734 15137772 BindingDB: IC50=28nM
    47315 1riw:C (2.04) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 15137772
    47316 1riw:C (2.04) BS02 OSC 3.4.21.5 GO:0004252 ... P00734 15137772 MOAD: ic50=28nM
    BindingDB: IC50=28nM
    47317 1rj5:A (2.81) BS01 ZN 4.2.1.1 GO:0004089 ... Q9WVT6 14660577
    47318 1rj5:B (2.81) BS01 ZN 4.2.1.1 GO:0004089 ... Q9WVT6 14660577
    47319 1rj6:A (2.9) BS01 ZN 4.2.1.1 GO:0004089 ... Q9WVT6 14660577
    47320 1rj6:A (2.9) BS02 AZM 4.2.1.1 GO:0004089 ... Q9WVT6 14660577
    47321 1rj6:B (2.9) BS01 ZN 4.2.1.1 GO:0004089 ... Q9WVT6 14660577
    47322 1rj6:B (2.9) BS02 AZM 4.2.1.1 GO:0004089 ... Q9WVT6 14660577
    47323 1rjd:A (1.8) BS01 SAM 2.1.1.233 GO:0005575 ... Q04081 14660564
    47324 1rjd:B (1.8) BS01 SAM 2.1.1.233 GO:0005575 ... Q04081 14660564
    47325 1rjd:C (1.8) BS01 SAM 2.1.1.233 GO:0005575 ... Q04081 14660564
    47326 1rje:A (2.0) BS01 SAH 2.1.1.233 GO:0005575 ... Q04081 14660564
    47327 1rje:B (2.0) BS01 SAH 2.1.1.233 GO:0005575 ... Q04081 14660564
    47328 1rje:C (2.0) BS01 SAH 2.1.1.233 GO:0005575 ... Q04081 14660564
    47329 1rjg:A (2.61) BS01 SAH 2.1.1.233 GO:0005575 ... Q04081 14660564
    47330 1rjk:A (1.99) BS01 peptide ? GO:0003677 ... P13053 15065852
    47331 1rjk:A (1.99) BS02 VDZ ? GO:0003677 ... P13053 15065852 BindingDB: Ki=0.1nM
    47332 1rjl:C (2.6) BS01 peptide ? GO:0009279 ... P17739 15713683
    47333 1rjm:A (2.15) BS01 EP1 4.1.3.36 GO:0005886 ... P9WNP5 16131752
    47334 1rjm:B (2.15) BS01 EP1 4.1.3.36 GO:0005886 ... P9WNP5 16131752
    47335 1rjm:C (2.15) BS01 EP1 4.1.3.36 GO:0005886 ... P9WNP5 16131752
    47336 1rjn:A (2.3) BS01 EP1 4.1.3.36 GO:0005886 ... P9WNP5 16131752
    47337 1rjn:B (2.3) BS01 COA 4.1.3.36 GO:0005886 ... P9WNP5 16131752
    47338 1rjn:B (2.3) BS02 EP1 4.1.3.36 GO:0005886 ... P9WNP5 16131752
    47339 1rjn:C (2.3) BS01 EP1 4.1.3.36 GO:0005886 ... P9WNP5 16131752
    47340 1rjo:A (1.67) BS01 CU 1.4.3.21 GO:0005507 ... P46881 15533431
    47341 1rjo:A (1.67) BS02 XE 1.4.3.21 GO:0005507 ... P46881 15533431
    47342 1rjo:A (1.67) BS03 XE 1.4.3.21 GO:0005507 ... P46881 15533431
    47343 1rjo:A (1.67) BS04 XE 1.4.3.21 GO:0005507 ... P46881 15533431
    47344 1rjo:A (1.67) BS05 XE 1.4.3.21 GO:0005507 ... P46881 15533431
    47345 1rjo:A (1.67) BS06 XE 1.4.3.21 GO:0005507 ... P46881 15533431
    47346 1rjo:A (1.67) BS07 XE 1.4.3.21 GO:0005507 ... P46881 15533431
    47347 1rjp:A (1.8) BS01 ZN 3.5.1.81 GO:0005829 ... Q9AGH8 14736882
    47348 1rjp:A (1.8) BS02 CU 3.5.1.81 GO:0005829 ... Q9AGH8 14736882
    47349 1rjq:A (1.8) BS01 ZN 3.5.1.81 GO:0005829 ... Q9AGH8 14736882
    47350 1rjr:A (2.1) BS01 ZN 3.5.1.81 GO:0005829 ... Q9AGH8 14736882
    47351 1rjr:A (2.1) BS02 ZN 3.5.1.81 GO:0005829 ... Q9AGH8 14736882
    47352 1rju:V (1.44) BS01 CU1 N/A GO:0005507 ... P0CX80 15613489
    47353 1rju:V (1.44) BS02 CU1 N/A GO:0005507 ... P0CX80 15613489
    47354 1rju:V (1.44) BS03 CU1 N/A GO:0005507 ... P0CX80 15613489
    47355 1rju:V (1.44) BS04 CU1 N/A GO:0005507 ... P0CX80 15613489
    47356 1rju:V (1.44) BS05 CU1 N/A GO:0005507 ... P0CX80 15613489
    47357 1rju:V (1.44) BS06 CU1 N/A GO:0005507 ... P0CX80 15613489
    47358 1rju:V (1.44) BS07 CU1 N/A GO:0005507 ... P0CX80 15613489
    47359 1rju:V (1.44) BS08 CU1 N/A GO:0005507 ... P0CX80 15613489
    47360 1rjv:A (-1.00) BS01 CA ? GO:0005509 ... P20472 15122922
    47361 1rjv:A (-1.00) BS02 CA ? GO:0005509 ... P20472 15122922
    47362 1rjw:A (2.35) BS01 ZN 1.1.1.1 GO:0004022 ... P42328 15122892
    47363 1rjw:A (2.35) BS02 ZN 1.1.1.1 GO:0004022 ... P42328 15122892
    47364 1rjw:A (2.35) BS03 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    47365 1rjw:B (2.35) BS01 ZN 1.1.1.1 GO:0004022 ... P42328 15122892
    47366 1rjw:B (2.35) BS02 ZN 1.1.1.1 GO:0004022 ... P42328 15122892
    47367 1rjw:B (2.35) BS03 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    47368 1rjw:B (2.35) BS04 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    47369 1rjw:B (2.35) BS05 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    47370 1rjw:B (2.35) BS06 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    47371 1rjw:C (2.35) BS01 ZN 1.1.1.1 GO:0004022 ... P42328 15122892
    47372 1rjw:C (2.35) BS02 ZN 1.1.1.1 GO:0004022 ... P42328 15122892
    47373 1rjw:C (2.35) BS03 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    47374 1rjw:D (2.35) BS01 ZN 1.1.1.1 GO:0004022 ... P42328 15122892
    47375 1rjw:D (2.35) BS02 ZN 1.1.1.1 GO:0004022 ... P42328 15122892
    47376 1rjw:D (2.35) BS03 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    47377 1rjw:D (2.35) BS04 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    47378 1rjw:D (2.35) BS05 ETF 1.1.1.1 GO:0004022 ... P42328 15122892
    47379 1rjy:A (1.9) BS01 peptide ? N/A P01901 15557346
    47380 1rjy:D (1.9) BS01 peptide ? N/A P01901 15557346
    47381 1rjz:A (2.6) BS01 peptide ? N/A P01901 15557346
    47382 1rjz:D (2.6) BS01 peptide ? N/A P01901 15557346
    47383 1rk0:A (2.61) BS01 peptide ? N/A P01901 15557346
    47384 1rk1:A (2.1) BS01 peptide ? N/A P01901 15557346
    47385 1rk1:A (2.1) BS02 FUL ? N/A P01901 15557346
    47386 1rk2:A (2.25) BS01 RIB 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    47387 1rk2:A (2.25) BS02 ALF 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    47388 1rk2:A (2.25) BS03 MG 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    47389 1rk2:A (2.25) BS04 ADP 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    47390 1rk2:B (2.25) BS01 RIB 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    47391 1rk2:B (2.25) BS02 ALF 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    47392 1rk2:B (2.25) BS03 MG 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    47393 1rk2:B (2.25) BS04 ADP 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    47394 1rk2:C (2.25) BS01 RIB 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    47395 1rk2:C (2.25) BS02 ALF 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    47396 1rk2:C (2.25) BS03 MG 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    47397 1rk2:C (2.25) BS04 ADP 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    47398 1rk2:D (2.25) BS01 RIB 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    47399 1rk2:D (2.25) BS02 ALF 2.7.1.15 GO:0004747 ... P0A9J6 10438599
    47400 1rk2:D (2.25) BS03 MG 2.7.1.15 GO:0004747 ... P0A9J6 10438599

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).