SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    474001 6h4z:A (2.3) BS04 MN 1.14.11.67 N/A Q9UGL1 31158747
    474002 6h4z:A (2.3) BS05 FQ5 1.14.11.67 N/A Q9UGL1 31158747 MOAD: Ki=0.002uM
    BindingDB: EC50=600nM, Ki=2.0nM, IC50=23nM
    474003 6h4z:A (2.3) BS06 FQ5 1.14.11.67 N/A Q9UGL1 31158747 MOAD: Ki=0.002uM
    BindingDB: EC50=600nM, Ki=2.0nM, IC50=23nM
    474004 6h50:A (2.19) BS01 ZN 1.14.11.67 N/A Q9UGL1 31158747
    474005 6h50:A (2.19) BS02 ZN 1.14.11.67 N/A Q9UGL1 31158747
    474006 6h50:A (2.19) BS03 MN 1.14.11.67 N/A Q9UGL1 31158747
    474007 6h50:A (2.19) BS04 MN 1.14.11.67 N/A Q9UGL1 31158747
    474008 6h50:A (2.19) BS05 FO2 1.14.11.67 N/A Q9UGL1 31158747 MOAD: ic50=0.156uM
    BindingDB: IC50=156nM
    474009 6h51:A (2.21) BS01 ZN 1.14.11.67 N/A Q9UGL1 31158747
    474010 6h51:A (2.21) BS02 ZN 1.14.11.67 N/A Q9UGL1 31158747
    474011 6h51:A (2.21) BS03 MN 1.14.11.67 N/A Q9UGL1 31158747
    474012 6h51:A (2.21) BS04 MN 1.14.11.67 N/A Q9UGL1 31158747
    474013 6h51:A (2.21) BS05 FQK 1.14.11.67 N/A Q9UGL1 31158747 MOAD: Ki=0.016uM
    BindingDB: IC50=134nM, EC50=26400nM, Ki=16nM
    474014 6h52:A (2.14) BS01 ZN 1.14.11.67 N/A Q9UGL1 31158747
    474015 6h52:A (2.14) BS02 ZN 1.14.11.67 N/A Q9UGL1 31158747
    474016 6h52:A (2.14) BS03 MN 1.14.11.67 N/A Q9UGL1 31158747
    474017 6h52:A (2.14) BS04 MN 1.14.11.67 N/A Q9UGL1 31158747
    474018 6h52:A (2.14) BS05 FQN 1.14.11.67 N/A Q9UGL1 31158747 MOAD: ic50=0.068uM
    BindingDB: IC50=68nM
    474019 6h54:A (2.02) BS01 TMO 3.6.4.10 GO:0005524 ... P19120 38317495
    474020 6h54:A (2.02) BS02 3FD 3.6.4.10 GO:0005524 ... P19120 38317495
    474021 6h56:A (3.2) BS01 ZN 3.4.24.- N/A Q9I6M7 31577948
    474022 6h57:A (2.3) BS01 MG 3.6.4.13 GO:0000462 ... Q04217 31188444
    474023 6h58:0 (7.9) BS01 rna ? GO:0000027 ... P0A7N4 30177741
    474024 6h58:00 (7.9) BS01 rna ? GO:0000027 ... P0A7N4 30177741
    474025 6h58:1 (7.9) BS01 rna ? GO:0000027 ... P0A7N9 30177741
    474026 6h58:11 (7.9) BS01 rna ? GO:0000027 ... P0A7N9 30177741
    474027 6h58:2 (7.9) BS01 rna ? GO:0002181 ... P0A7P5 30177741
    474028 6h58:22 (7.9) BS01 rna ? GO:0002181 ... P0A7P5 30177741
    474029 6h58:3 (7.9) BS01 rna ? GO:0002181 ... P0A7Q1 30177741
    474030 6h58:33 (7.9) BS01 rna ? GO:0002181 ... P0A7Q1 30177741
    474031 6h58:4 (7.9) BS01 rna ? GO:0002181 ... P0A7Q6 30177741
    474032 6h58:44 (7.9) BS01 rna ? GO:0002181 ... P0A7Q6 30177741
    474033 6h58:6 (7.9) BS01 rna ? GO:0002181 ... P0A7M9 30177741
    474034 6h58:66 (7.9) BS01 rna ? GO:0002181 ... P0A7M9 30177741
    474035 6h58:C (7.9) BS01 rna ? GO:0000027 ... P60422 30177741
    474036 6h58:C (7.9) BS02 rna ? GO:0000027 ... P60422 30177741
    474037 6h58:CC (7.9) BS01 rna ? GO:0000027 ... P60422 30177741
    474038 6h58:CC (7.9) BS02 rna ? GO:0000027 ... P60422 30177741
    474039 6h58:D (7.9) BS01 rna ? GO:0000027 ... P60438 30177741
    474040 6h58:DD (7.9) BS01 rna ? GO:0000027 ... P60438 30177741
    474041 6h58:E (7.9) BS01 rna ? GO:0001070 ... P60723 30177741
    474042 6h58:EE (7.9) BS01 rna ? GO:0001070 ... P60723 30177741
    474043 6h58:F (7.9) BS01 rna ? GO:0000027 ... P62399 30177741
    474044 6h58:F (7.9) BS02 rna ? GO:0000027 ... P62399 30177741
    474045 6h58:FF (7.9) BS01 rna ? GO:0000027 ... P62399 30177741
    474046 6h58:FF (7.9) BS02 rna ? GO:0000027 ... P62399 30177741
    474047 6h58:G (7.9) BS01 rna ? GO:0000027 ... P0AG55 30177741
    474048 6h58:GG (7.9) BS01 rna ? GO:0000027 ... P0AG55 30177741
    474049 6h58:H (7.9) BS01 rna ? GO:0002181 ... P0A7R1 30177741
    474050 6h58:HH (7.9) BS01 rna ? GO:0002181 ... P0A7R1 30177741
    474051 6h58:J (7.9) BS01 rna ? GO:0002181 ... P0AA10 30177741
    474052 6h58:JJ (7.9) BS01 rna ? GO:0002181 ... P0AA10 30177741
    474053 6h58:K (7.9) BS01 rna ? GO:0002181 ... P0ADY3 30177741
    474054 6h58:K (7.9) BS02 rna ? GO:0002181 ... P0ADY3 30177741
    474055 6h58:KK (7.9) BS01 rna ? GO:0002181 ... P0ADY3 30177741
    474056 6h58:KK (7.9) BS02 rna ? GO:0002181 ... P0ADY3 30177741
    474057 6h58:L (7.9) BS01 rna ? GO:0002181 ... P02413 30177741
    474058 6h58:LL (7.9) BS01 rna ? GO:0002181 ... P02413 30177741
    474059 6h58:M (7.9) BS01 rna ? GO:0000027 ... P0ADY7 30177741
    474060 6h58:MM (7.9) BS01 rna ? GO:0000027 ... P0ADY7 30177741
    474061 6h58:N (7.9) BS01 rna ? GO:0000027 ... P0AG44 30177741
    474062 6h58:NN (7.9) BS01 rna ? GO:0000027 ... P0AG44 30177741
    474063 6h58:O (7.9) BS01 rna ? GO:0002181 ... P0C018 30177741
    474064 6h58:O (7.9) BS02 rna ? GO:0002181 ... P0C018 30177741
    474065 6h58:OO (7.9) BS01 rna ? GO:0002181 ... P0C018 30177741
    474066 6h58:OO (7.9) BS02 rna ? GO:0002181 ... P0C018 30177741
    474067 6h58:P (7.9) BS01 rna ? GO:0000027 ... P0A7K6 30177741
    474068 6h58:P (7.9) BS02 rna ? GO:0000027 ... P0A7K6 30177741
    474069 6h58:PP (7.9) BS01 rna ? GO:0000027 ... P0A7K6 30177741
    474070 6h58:PP (7.9) BS02 rna ? GO:0000027 ... P0A7K6 30177741
    474071 6h58:Q (7.9) BS01 rna ? GO:0000027 ... P0A7L3 30177741
    474072 6h58:QQ (7.9) BS01 rna ? GO:0000027 ... P0A7L3 30177741
    474073 6h58:R (7.9) BS01 rna ? GO:0002181 ... P0AG48 30177741
    474074 6h58:RR (7.9) BS01 rna ? GO:0002181 ... P0AG48 30177741
    474075 6h58:S (7.9) BS01 rna ? GO:0002181 ... P61175 30177741
    474076 6h58:SS (7.9) BS01 rna ? GO:0002181 ... P61175 30177741
    474077 6h58:T (7.9) BS01 rna ? GO:0000027 ... P0ADZ0 30177741
    474078 6h58:TT (7.9) BS01 rna ? GO:0000027 ... P0ADZ0 30177741
    474079 6h58:U (7.9) BS01 rna ? GO:0000027 ... P60624 30177741
    474080 6h58:UU (7.9) BS01 rna ? GO:0000027 ... P60624 30177741
    474081 6h58:V (7.9) BS01 rna ? GO:0000027 ... P68919 30177741
    474082 6h58:V (7.9) BS02 rna ? GO:0000027 ... P68919 30177741
    474083 6h58:VV (7.9) BS01 rna ? GO:0000027 ... P68919 30177741
    474084 6h58:VV (7.9) BS02 rna ? GO:0000027 ... P68919 30177741
    474085 6h58:W (7.9) BS01 rna ? GO:0003735 ... P0A7L8 30177741
    474086 6h58:W (7.9) BS02 rna ? GO:0003735 ... P0A7L8 30177741
    474087 6h58:WW (7.9) BS01 rna ? GO:0003735 ... P0A7L8 30177741
    474088 6h58:WW (7.9) BS02 rna ? GO:0003735 ... P0A7L8 30177741
    474089 6h58:X (7.9) BS01 rna ? GO:0000027 ... P0A7M2 30177741
    474090 6h58:XX (7.9) BS01 rna ? GO:0000027 ... P0A7M2 30177741
    474091 6h58:Y (7.9) BS01 rna ? GO:0000027 ... P0A7M6 30177741
    474092 6h58:YY (7.9) BS01 rna ? GO:0000027 ... P0A7M6 30177741
    474093 6h58:Z (7.9) BS01 rna ? GO:0000027 ... P0AG51 30177741
    474094 6h58:Z (7.9) BS02 rna ? GO:0000027 ... P0AG51 30177741
    474095 6h58:ZZ (7.9) BS01 rna ? GO:0000027 ... P0AG51 30177741
    474096 6h58:ZZ (7.9) BS02 rna ? GO:0000027 ... P0AG51 30177741
    474097 6h58:b (7.9) BS01 rna ? GO:0000028 ... P0A7V0 30177741
    474098 6h58:bb (7.9) BS01 rna ? GO:0000028 ... P0A7V0 30177741
    474099 6h58:c (7.9) BS01 rna ? GO:0003676 ... P0A7V3 30177741
    474100 6h58:cc (7.9) BS01 rna ? GO:0003676 ... P0A7V3 30177741
    474101 6h58:d (7.9) BS01 rna ? GO:0000028 ... P0A7V8 30177741
    474102 6h58:dd (7.9) BS01 rna ? GO:0000028 ... P0A7V8 30177741
    474103 6h58:e (7.9) BS01 rna ? GO:0000028 ... P0A7W1 30177741
    474104 6h58:ee (7.9) BS01 rna ? GO:0000028 ... P0A7W1 30177741
    474105 6h58:f (7.9) BS01 rna ? GO:0003735 ... P02358 30177741
    474106 6h58:ff (7.9) BS01 rna ? GO:0003735 ... P02358 30177741
    474107 6h58:g (7.9) BS01 rna ? GO:0000028 ... P02359 30177741
    474108 6h58:g (7.9) BS02 rna ? GO:0000028 ... P02359 30177741
    474109 6h58:gg (7.9) BS01 rna ? GO:0000028 ... P02359 30177741
    474110 6h58:gg (7.9) BS02 rna ? GO:0000028 ... P02359 30177741
    474111 6h58:h (7.9) BS01 rna ? GO:0000028 ... P0A7W7 30177741
    474112 6h58:hh (7.9) BS01 rna ? GO:0000028 ... P0A7W7 30177741
    474113 6h58:i (7.9) BS01 rna ? GO:0000049 ... P0A7X3 30177741
    474114 6h58:ii (7.9) BS01 rna ? GO:0000049 ... P0A7X3 30177741
    474115 6h58:j (7.9) BS01 rna ? GO:0000049 ... P0A7R5 30177741
    474116 6h58:jj (7.9) BS01 rna ? GO:0000049 ... P0A7R5 30177741
    474117 6h58:k (7.9) BS01 rna ? GO:0002181 ... P0A7R9 30177741
    474118 6h58:kk (7.9) BS01 rna ? GO:0002181 ... P0A7R9 30177741
    474119 6h58:l (7.9) BS01 rna ? GO:0000049 ... P0A7S3 30177741
    474120 6h58:ll (7.9) BS01 rna ? GO:0000049 ... P0A7S3 30177741
    474121 6h58:m (7.9) BS01 rna ? GO:0000049 ... P0A7S9 30177741
    474122 6h58:mm (7.9) BS01 rna ? GO:0000049 ... P0A7S9 30177741
    474123 6h58:n (7.9) BS01 rna ? GO:0003735 ... P0AG59 30177741
    474124 6h58:nn (7.9) BS01 rna ? GO:0003735 ... P0AG59 30177741
    474125 6h58:o (7.9) BS01 rna ? GO:0000028 ... P0ADZ4 30177741
    474126 6h58:o (7.9) BS02 rna ? GO:0000028 ... P0ADZ4 30177741
    474127 6h58:oo (7.9) BS01 rna ? GO:0000028 ... P0ADZ4 30177741
    474128 6h58:oo (7.9) BS02 rna ? GO:0000028 ... P0ADZ4 30177741
    474129 6h58:p (7.9) BS01 rna ? GO:0000028 ... P0A7T3 30177741
    474130 6h58:pp (7.9) BS01 rna ? GO:0000028 ... P0A7T3 30177741
    474131 6h58:q (7.9) BS01 rna ? GO:0000028 ... P0AG63 30177741
    474132 6h58:qq (7.9) BS01 rna ? GO:0000028 ... P0AG63 30177741
    474133 6h58:r (7.9) BS01 rna ? GO:0003735 ... P0A7T7 30177741
    474134 6h58:rr (7.9) BS01 rna ? GO:0003735 ... P0A7T7 30177741
    474135 6h58:s (7.9) BS01 rna ? GO:0003723 ... P0A7U3 30177741
    474136 6h58:ss (7.9) BS01 rna ? GO:0003723 ... P0A7U3 30177741
    474137 6h58:t (7.9) BS01 rna ? GO:0000028 ... P0A7U7 30177741
    474138 6h58:tt (7.9) BS01 rna ? GO:0000028 ... P0A7U7 30177741
    474139 6h58:u (7.9) BS01 rna ? GO:0000028 ... P68679 30177741
    474140 6h58:uu (7.9) BS01 rna ? GO:0000028 ... P68679 30177741
    474141 6h58:v (7.9) BS01 rna ? GO:0005737 ... P0AFW2 30177741
    474142 6h58:vv (7.9) BS01 rna ? GO:0005737 ... P0AFW2 30177741
    474143 6h58:x (7.9) BS01 rna ? GO:0005515 ... P0AFX0 30177741
    474144 6h58:x (7.9) BS02 rna ? GO:0005515 ... P0AFX0 30177741
    474145 6h58:xx (7.9) BS01 rna ? GO:0005515 ... P0AFX0 30177741
    474146 6h58:xx (7.9) BS02 rna ? GO:0005515 ... P0AFX0 30177741
    474147 6h58:y (7.9) BS01 rna ? GO:0000028 ... P0AG67 30177741
    474148 6h58:yy (7.9) BS01 rna ? GO:0000028 ... P0AG67 30177741
    474149 6h59:A (1.8) BS01 MG 2.7.8.- GO:0000287 ... P9WPG7 31098408
    474150 6h59:A (1.8) BS02 MG 2.7.8.- GO:0000287 ... P9WPG7 31098408
    474151 6h59:A (1.8) BS03 FQT 2.7.8.- GO:0000287 ... P9WPG7 31098408
    474152 6h59:B (1.8) BS01 MG 2.7.8.- GO:0000287 ... P9WPG7 31098408
    474153 6h59:B (1.8) BS02 MG 2.7.8.- GO:0000287 ... P9WPG7 31098408
    474154 6h59:B (1.8) BS03 FQT 2.7.8.- GO:0000287 ... P9WPG7 31098408
    474155 6h5a:A (1.88) BS01 MN 2.7.8.- GO:0000287 ... P9WPG7 31098408
    474156 6h5a:A (1.88) BS02 MN 2.7.8.- GO:0000287 ... P9WPG7 31098408
    474157 6h5a:A (1.88) BS03 FLC 2.7.8.- GO:0000287 ... P9WPG7 31098408
    474158 6h5a:A (1.88) BS04 FLC 2.7.8.- GO:0000287 ... P9WPG7 31098408
    474159 6h5a:B (1.88) BS01 MN 2.7.8.- GO:0000287 ... P9WPG7 31098408
    474160 6h5a:B (1.88) BS02 MN 2.7.8.- GO:0000287 ... P9WPG7 31098408
    474161 6h5a:B (1.88) BS03 FLC 2.7.8.- GO:0000287 ... P9WPG7 31098408
    474162 6h5b:A (2.8) BS01 GSP ? GO:0003924 ... Q1DB04 31757955
    474163 6h5b:A (2.8) BS02 MG ? GO:0003924 ... Q1DB04 31757955
    474164 6h5c:A (1.14) BS01 FSQ 4.2.1.10 GO:0003855 ... P24670 N/A
    474165 6h5c:B (1.14) BS01 FSQ 4.2.1.10 GO:0003855 ... P24670 N/A
    474166 6h5d:A (1.25) BS01 WPL 4.2.1.10 GO:0003855 ... P24670 N/A
    474167 6h5d:B (1.25) BS01 WPL 4.2.1.10 GO:0003855 ... P24670 N/A
    474168 6h5e:B (2.139) BS01 ZN 6.3.5.13 GO:0005524 ... A0A0H3JUU7 30154570
    474169 6h5e:B (2.139) BS02 ANP 6.3.5.13 GO:0005524 ... A0A0H3JUU7 30154570
    474170 6h5e:B (2.139) BS03 MG 6.3.5.13 GO:0005524 ... A0A0H3JUU7 30154570
    474171 6h5e:B (2.139) BS04 ANP 6.3.5.13 GO:0005524 ... A0A0H3JUU7 30154570
    474172 6h5e:D (2.139) BS01 ZN 6.3.5.13 GO:0005524 ... A0A0H3JUU7 30154570
    474173 6h5e:D (2.139) BS02 ANP 6.3.5.13 GO:0005524 ... A0A0H3JUU7 30154570
    474174 6h5e:D (2.139) BS03 MG 6.3.5.13 GO:0005524 ... A0A0H3JUU7 30154570
    474175 6h5g:A (1.04) BS01 FQZ 4.2.1.10 GO:0003855 ... P24670 N/A
    474176 6h5j:A (1.4) BS01 FT5 4.2.1.10 GO:0003855 ... P24670 N/A
    474177 6h5k:A (1.54) BS01 ZN ? N/A V6F235 N/A
    474178 6h5k:A (1.54) BS02 ZN ? N/A V6F235 N/A
    474179 6h5k:A (1.54) BS03 ZN ? N/A V6F235 N/A
    474180 6h5l:A (2.6) BS01 HEC 1.7.3.4 GO:0016491 ... A0A2C9CG41 30950404
    474181 6h5l:A (2.6) BS02 HEC 1.7.3.4 GO:0016491 ... A0A2C9CG41 30950404
    474182 6h5l:A (2.6) BS03 HEC 1.7.3.4 GO:0016491 ... A0A2C9CG41 30950404
    474183 6h5l:A (2.6) BS04 HEC 1.7.3.4 GO:0016491 ... A0A2C9CG41 30950404
    474184 6h5l:A (2.6) BS05 HEC 1.7.3.4 GO:0016491 ... A0A2C9CG41 30950404
    474185 6h5l:A (2.6) BS06 HEC 1.7.3.4 GO:0016491 ... A0A2C9CG41 30950404
    474186 6h5l:A (2.6) BS07 HEC 1.7.3.4 GO:0016491 ... A0A2C9CG41 30950404
    474187 6h5l:A (2.6) BS08 HEC 1.7.3.4 GO:0016491 ... A0A2C9CG41 30950404
    474188 6h5l:B (2.6) BS01 HEC ? GO:0009055 ... Q1PVE1 30950404
    474189 6h5l:B (2.6) BS02 HEC ? GO:0009055 ... Q1PVE1 30950404
    474190 6h5m:A (1.6) BS01 ZN ? N/A V6F235 N/A
    474191 6h5o:A (2.82) BS01 JPP 3.4.16.4 GO:0005886 ... A0A0H3JPA5 30858202
    474192 6h5o:B (2.82) BS01 JPP 3.4.16.4 GO:0005886 ... A0A0H3JPA5 30858202
    474193 6h5q:B (3.3) BS01 rna ? GO:0005198 ... B8PZP0 30787192
    474194 6h5s:C (3.3) BS01 rna ? GO:0005198 ... Q77M43 30787192
    474195 6h5u:A (2.0) BS01 ZN ? N/A V6F235 N/A
    474196 6h5u:B (2.0) BS01 peptide ? N/A V6F235 N/A
    474197 6h5u:C (2.0) BS01 ZN ? N/A V6F235 N/A
    474198 6h5w:A (1.37) BS01 FUC 3.4.15.1 GO:0006508 ... P12821 30372620
    474199 6h5w:A (1.37) BS02 ZN 3.4.15.1 GO:0006508 ... P12821 30372620
    474200 6h5w:A (1.37) BS03 FT8 3.4.15.1 GO:0006508 ... P12821 30372620 BindingDB: Ki=0.015000nM, IC50=0.100000nM

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).