SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    475201 6hcj:M2 (3.8) BS01 rna ? GO:0003735 ... G1TRM4 30293783
    475202 6hcj:M3 (3.8) BS01 rna ? GO:0003723 ... G1SZ12 30293783
    475203 6hcj:N2 (3.8) BS01 rna ? GO:0003735 ... G1SFR8 30293783
    475204 6hcj:N3 (3.8) BS01 rna ? GO:0002181 ... G1T0C1 30293783
    475205 6hcj:N3 (3.8) BS02 rna ? GO:0002181 ... G1T0C1 30293783
    475206 6hcj:O2 (3.8) BS01 rna ? GO:0003735 ... G1SP51 30293783
    475207 6hcj:O3 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475208 6hcj:P2 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475209 6hcj:P3 (3.8) BS01 rna ? GO:0002181 ... G1SCJ6 30293783
    475210 6hcj:P3 (3.8) BS02 rna ? GO:0002181 ... G1SCJ6 30293783
    475211 6hcj:Q2 (3.8) BS01 rna ? GO:0000028 ... G1U0Q2 30293783
    475212 6hcj:Q3 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475213 6hcj:R2 (3.8) BS01 rna ? GO:0000462 ... G1SGX4 30293783
    475214 6hcj:R3 (3.8) BS01 rna N/A GO:0003723 ... N/A 30293783
    475215 6hcj:R3 (3.8) BS02 rna N/A GO:0003723 ... N/A 30293783
    475216 6hcj:S2 (3.8) BS01 rna ? GO:0003735 ... G1TU13 30293783
    475217 6hcj:S3 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475218 6hcj:S3 (3.8) BS02 rna N/A GO:0003735 ... N/A 30293783
    475219 6hcj:T2 (3.8) BS01 rna ? GO:0003676 ... G1TPG3 30293783
    475220 6hcj:T3 (3.8) BS01 rna ? GO:0003735 ... G1SHQ2 30293783
    475221 6hcj:T3 (3.8) BS02 rna ? GO:0003735 ... G1SHQ2 30293783
    475222 6hcj:U2 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475223 6hcj:U3 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475224 6hcj:V2 (3.8) BS01 rna ? GO:0003723 ... G1SIZ2 30293783
    475225 6hcj:V3 (3.8) BS01 rna ? GO:0003735 ... G1T6D1 30293783
    475226 6hcj:V3 (3.8) BS02 rna ? GO:0003735 ... G1T6D1 30293783
    475227 6hcj:X2 (3.8) BS01 rna ? GO:0003735 ... G1TG89 30293783
    475228 6hcj:X3 (3.8) BS01 rna ? GO:0003735 ... G1SE76 30293783
    475229 6hcj:X3 (3.8) BS02 rna ? GO:0003735 ... G1SE76 30293783
    475230 6hcj:Y2 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475231 6hcj:Y3 (3.8) BS01 rna ? GO:0003723 ... G1SQH0 30293783
    475232 6hcj:Y3 (3.8) BS02 rna ? GO:0003723 ... G1SQH0 30293783
    475233 6hcj:Z2 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475234 6hcj:Z3 (3.8) BS01 rna ? GO:0003735 ... G1TXF6 30293783
    475235 6hcj:a3 (3.8) BS01 rna ? GO:0003735 ... G1SNY0 30293783
    475236 6hcj:b2 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475237 6hcj:b2 (3.8) BS02 rna N/A GO:0003735 ... N/A 30293783
    475238 6hcj:b2 (3.8) BS03 ZN N/A GO:0003735 ... N/A 30293783
    475239 6hcj:b3 (3.8) BS01 rna ? GO:0002181 ... G1SGR6 30293783
    475240 6hcj:c2 (3.8) BS01 rna ? GO:0003735 ... G1TZ76 30293783
    475241 6hcj:c3 (3.8) BS01 rna ? GO:0002181 ... G1TDL2 30293783
    475242 6hcj:d2 (3.8) BS01 rna ? GO:0000028 ... G1TIB4 30293783
    475243 6hcj:d2 (3.8) BS02 rna ? GO:0000028 ... G1TIB4 30293783
    475244 6hcj:d3 (3.8) BS01 rna ? GO:0002181 ... G1SHG0 30293783
    475245 6hcj:e2 (3.8) BS01 rna ? GO:0002181 ... G1U7M4 30293783
    475246 6hcj:e2 (3.8) BS02 ZN ? GO:0002181 ... G1U7M4 30293783
    475247 6hcj:e3 (3.8) BS01 rna ? GO:0003735 ... G1TUN8 30293783
    475248 6hcj:f2 (3.8) BS01 rna ? GO:0003735 ... G1T8A2 30293783
    475249 6hcj:f3 (3.8) BS01 rna ? GO:0000049 ... G1SF08 30293783
    475250 6hcj:g2 (3.8) BS01 rna ? GO:0003735 ... G1SK22 30293783
    475251 6hcj:g2 (3.8) BS02 ZN ? GO:0003735 ... G1SK22 30293783
    475252 6hcj:g3 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475253 6hcj:h2 (3.8) BS01 rna ? GO:0001891 ... G1SJB4 30293783
    475254 6hcj:h3 (3.8) BS01 rna ? GO:0000463 ... G1SIT5 30293783
    475255 6hcj:h3 (3.8) BS02 rna ? GO:0000463 ... G1SIT5 30293783
    475256 6hcj:i3 (3.8) BS01 rna ? GO:0003735 ... G1TTQ5 30293783
    475257 6hcj:j3 (3.8) BS01 rna ? GO:0003723 ... U3KPD5 30293783
    475258 6hcj:j3 (3.8) BS02 rna ? GO:0003723 ... U3KPD5 30293783
    475259 6hcj:j3 (3.8) BS03 ZN ? GO:0003723 ... U3KPD5 30293783
    475260 6hcj:k3 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475261 6hcj:l3 (3.8) BS01 rna ? GO:0003735 ... G1TTN1 30293783
    475262 6hcj:l3 (3.8) BS02 rna ? GO:0003735 ... G1TTN1 30293783
    475263 6hcj:m3 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475264 6hcj:m3 (3.8) BS02 ZN N/A GO:0003735 ... N/A 30293783
    475265 6hcj:o3 (3.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475266 6hcj:o3 (3.8) BS02 rna N/A GO:0003735 ... N/A 30293783
    475267 6hcj:o3 (3.8) BS03 ZN N/A GO:0003735 ... N/A 30293783
    475268 6hcj:p3 (3.8) BS01 rna ? GO:0003735 ... G1SY53 30293783
    475269 6hcj:p3 (3.8) BS02 rna ? GO:0003735 ... G1SY53 30293783
    475270 6hcj:p3 (3.8) BS03 ZN ? GO:0003735 ... G1SY53 30293783
    475271 6hcj:r3 (3.8) BS01 rna ? GO:0003735 ... G1U7L1 30293783
    475272 6hcj:t3 (3.8) BS01 rna N/A GO:0042254 ... N/A 30293783
    475273 6hcj:u3 (3.8) BS01 rna ? GO:0003723 ... G1SMR7 30293783
    475274 6hcj:w3 (3.8) BS01 rna ? GO:0003723 ... G1SKZ8 30293783
    475275 6hck:A (2.7) BS01 LEU ? GO:0003677 ... P22262 30759392
    475276 6hck:A (2.7) BS02 LEU ? GO:0003677 ... P22262 30759392
    475277 6hcm:A3 (6.8) BS01 rna ? GO:0002181 ... G1TT27 30293783
    475278 6hcm:B1 (6.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475279 6hcm:B3 (6.8) BS01 rna ? GO:0003723 ... G1TL06 30293783
    475280 6hcm:C1 (6.8) BS01 rna ? GO:0003735 ... G1SS70 30293783
    475281 6hcm:C3 (6.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475282 6hcm:C3 (6.8) BS02 rna N/A GO:0003735 ... N/A 30293783
    475283 6hcm:D1 (6.8) BS01 rna N/A GO:0003723 ... N/A 30293783
    475284 6hcm:D3 (6.8) BS01 rna ? GO:0000027 ... P19949 30293783
    475285 6hcm:D3 (6.8) BS02 rna ? GO:0000027 ... P19949 30293783
    475286 6hcm:E1 (6.8) BS01 rna 4.2.99.18 GO:0003677 ... G1TNM3 30293783
    475287 6hcm:E1 (6.8) BS02 rna 4.2.99.18 GO:0003677 ... G1TNM3 30293783
    475288 6hcm:E3 (6.8) BS01 rna ? GO:0000027 ... G1SKF7 30293783
    475289 6hcm:F1 (6.8) BS01 rna N/A GO:0003723 ... N/A 30293783
    475290 6hcm:F3 (6.8) BS01 rna ? GO:0000463 ... G1TUB1 30293783
    475291 6hcm:F3 (6.8) BS02 rna ? GO:0000463 ... G1TUB1 30293783
    475292 6hcm:G1 (6.8) BS01 rna ? GO:0003723 ... G1TFM5 30293783
    475293 6hcm:G1 (6.8) BS02 MG ? GO:0003723 ... G1TFM5 30293783
    475294 6hcm:G3 (6.8) BS01 rna N/A GO:0003723 ... N/A 30293783
    475295 6hcm:G3 (6.8) BS02 rna N/A GO:0003723 ... N/A 30293783
    475296 6hcm:H1 (6.8) BS01 rna ? GO:0003735 ... G1TM55 30293783
    475297 6hcm:H3 (6.8) BS01 rna ? GO:0002181 ... G1SWI6 30293783
    475298 6hcm:I1 (6.8) BS01 rna ? GO:0003735 ... G1SVB0 30293783
    475299 6hcm:I3 (6.8) BS01 rna ? GO:0003735 ... B7NZQ2 30293783
    475300 6hcm:I3 (6.8) BS02 rna ? GO:0003735 ... B7NZQ2 30293783
    475301 6hcm:J1 (6.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475302 6hcm:J3 (6.8) BS01 rna ? GO:0003735 ... G1TUB8 30293783
    475303 6hcm:J3 (6.8) BS02 rna ? GO:0003735 ... G1TUB8 30293783
    475304 6hcm:K1 (6.8) BS01 rna ? GO:0003723 ... B7NZS8 30293783
    475305 6hcm:L1 (6.8) BS01 rna ? GO:0003723 ... G1TPV3 30293783
    475306 6hcm:L3 (6.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475307 6hcm:M1 (6.8) BS01 rna ? GO:0003735 ... G1TRM4 30293783
    475308 6hcm:M3 (6.8) BS01 rna ? GO:0003723 ... G1SZ12 30293783
    475309 6hcm:N1 (6.8) BS01 rna ? GO:0003735 ... G1SFR8 30293783
    475310 6hcm:N3 (6.8) BS01 rna ? GO:0002181 ... G1T0C1 30293783
    475311 6hcm:N3 (6.8) BS02 rna ? GO:0002181 ... G1T0C1 30293783
    475312 6hcm:O1 (6.8) BS01 rna ? GO:0003735 ... G1SP51 30293783
    475313 6hcm:O3 (6.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475314 6hcm:P1 (6.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475315 6hcm:P3 (6.8) BS01 rna ? GO:0002181 ... G1SCJ6 30293783
    475316 6hcm:P3 (6.8) BS02 rna ? GO:0002181 ... G1SCJ6 30293783
    475317 6hcm:Q1 (6.8) BS01 rna ? GO:0000028 ... G1U0Q2 30293783
    475318 6hcm:Q3 (6.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475319 6hcm:R1 (6.8) BS01 rna ? GO:0000462 ... G1SGX4 30293783
    475320 6hcm:R3 (6.8) BS01 rna N/A GO:0003723 ... N/A 30293783
    475321 6hcm:R3 (6.8) BS02 rna N/A GO:0003723 ... N/A 30293783
    475322 6hcm:S1 (6.8) BS01 rna ? GO:0003735 ... G1TU13 30293783
    475323 6hcm:S3 (6.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475324 6hcm:S3 (6.8) BS02 rna N/A GO:0003735 ... N/A 30293783
    475325 6hcm:T1 (6.8) BS01 rna ? GO:0003676 ... G1TPG3 30293783
    475326 6hcm:T3 (6.8) BS01 rna ? GO:0003735 ... G1SHQ2 30293783
    475327 6hcm:U1 (6.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475328 6hcm:U3 (6.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475329 6hcm:V1 (6.8) BS01 rna ? GO:0003723 ... G1SIZ2 30293783
    475330 6hcm:V3 (6.8) BS01 rna ? GO:0003735 ... G1T6D1 30293783
    475331 6hcm:W3 (6.8) BS01 rna ? GO:0000027 ... G1SE28 30293783
    475332 6hcm:W3 (6.8) BS02 rna ? GO:0000027 ... G1SE28 30293783
    475333 6hcm:X1 (6.8) BS01 rna ? GO:0003735 ... G1TG89 30293783
    475334 6hcm:X3 (6.8) BS01 rna ? GO:0003735 ... G1SE76 30293783
    475335 6hcm:X3 (6.8) BS02 rna ? GO:0003735 ... G1SE76 30293783
    475336 6hcm:Y1 (6.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475337 6hcm:Y3 (6.8) BS01 rna ? GO:0003723 ... G1SQH0 30293783
    475338 6hcm:Y3 (6.8) BS02 rna ? GO:0003723 ... G1SQH0 30293783
    475339 6hcm:Z1 (6.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475340 6hcm:Z3 (6.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475341 6hcm:a1 (6.8) BS01 rna ? GO:0003735 ... G1TDB3 30293783
    475342 6hcm:a3 (6.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475343 6hcm:b1 (6.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475344 6hcm:b1 (6.8) BS02 rna N/A GO:0003735 ... N/A 30293783
    475345 6hcm:b1 (6.8) BS03 ZN N/A GO:0003735 ... N/A 30293783
    475346 6hcm:b3 (6.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475347 6hcm:c1 (6.8) BS01 rna ? GO:0003735 ... G1TZ76 30293783
    475348 6hcm:c3 (6.8) BS01 rna ? GO:0002181 ... G1TDL2 30293783
    475349 6hcm:d1 (6.8) BS01 rna ? GO:0000028 ... G1TIB4 30293783
    475350 6hcm:d3 (6.8) BS01 rna ? GO:0002181 ... G1SHG0 30293783
    475351 6hcm:e1 (6.8) BS01 rna ? GO:0002181 ... G1U7M4 30293783
    475352 6hcm:e3 (6.8) BS01 rna ? GO:0003735 ... G1TUN8 30293783
    475353 6hcm:f1 (6.8) BS01 rna ? GO:0003735 ... G1T8A2 30293783
    475354 6hcm:f1 (6.8) BS02 rna ? GO:0003735 ... G1T8A2 30293783
    475355 6hcm:f3 (6.8) BS01 rna ? GO:0000049 ... G1SF08 30293783
    475356 6hcm:g1 (6.8) BS01 rna ? GO:0003735 ... G1SK22 30293783
    475357 6hcm:g1 (6.8) BS02 ZN ? GO:0003735 ... G1SK22 30293783
    475358 6hcm:g3 (6.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475359 6hcm:g3 (6.8) BS02 ZN N/A GO:0003735 ... N/A 30293783
    475360 6hcm:g3 (6.8) BS03 MG N/A GO:0003735 ... N/A 30293783
    475361 6hcm:h1 (6.8) BS01 rna ? GO:0001891 ... G1SJB4 30293783
    475362 6hcm:h3 (6.8) BS01 rna ? GO:0000463 ... G1SIT5 30293783
    475363 6hcm:h3 (6.8) BS02 rna ? GO:0000463 ... G1SIT5 30293783
    475364 6hcm:i3 (6.8) BS01 rna ? GO:0003735 ... G1TTQ5 30293783
    475365 6hcm:j1 (6.8) BS01 rna N/A GO:0003747 ... N/A 30293783
    475366 6hcm:j1 (6.8) BS02 rna N/A GO:0003747 ... N/A 30293783
    475367 6hcm:j1 (6.8) BS03 rna N/A GO:0003747 ... N/A 30293783
    475368 6hcm:j3 (6.8) BS01 rna ? GO:0003723 ... U3KPD5 30293783
    475369 6hcm:j3 (6.8) BS02 rna ? GO:0003723 ... U3KPD5 30293783
    475370 6hcm:j3 (6.8) BS03 ZN ? GO:0003723 ... U3KPD5 30293783
    475371 6hcm:k1 (6.8) BS01 rna ? GO:0005524 ... G1SG72 30293783
    475372 6hcm:k1 (6.8) BS02 rna ? GO:0005524 ... G1SG72 30293783
    475373 6hcm:k1 (6.8) BS03 SF4 ? GO:0005524 ... G1SG72 30293783
    475374 6hcm:k1 (6.8) BS04 SF4 ? GO:0005524 ... G1SG72 30293783
    475375 6hcm:k3 (6.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475376 6hcm:l3 (6.8) BS01 rna ? GO:0003735 ... G1TTN1 30293783
    475377 6hcm:l3 (6.8) BS02 rna ? GO:0003735 ... G1TTN1 30293783
    475378 6hcm:m3 (6.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475379 6hcm:m3 (6.8) BS02 ZN N/A GO:0003735 ... N/A 30293783
    475380 6hcm:o3 (6.8) BS01 rna N/A GO:0003735 ... N/A 30293783
    475381 6hcm:o3 (6.8) BS02 rna N/A GO:0003735 ... N/A 30293783
    475382 6hcm:o3 (6.8) BS03 ZN N/A GO:0003735 ... N/A 30293783
    475383 6hcm:p3 (6.8) BS01 rna ? GO:0003735 ... G1SY53 30293783
    475384 6hcm:p3 (6.8) BS02 ZN ? GO:0003735 ... G1SY53 30293783
    475385 6hcm:r3 (6.8) BS01 rna ? GO:0003735 ... G1U7L1 30293783
    475386 6hcm:s3 (6.8) BS01 rna N/A GO:0042254 ... N/A 30293783
    475387 6hcm:t3 (6.8) BS01 rna ? GO:0003723 ... G1SMR7 30293783
    475388 6hcm:u3 (6.8) BS01 rna ? GO:0003723 ... G1SKZ8 30293783
    475389 6hco:A (3.58) BS01 FY5 7.6.2.2 GO:0005515 ... Q9UNQ0 30405239
    475390 6hco:B (3.58) BS01 FY5 7.6.2.2 GO:0005515 ... Q9UNQ0 30405239
    475391 6hcp:A (1.83) BS01 C8E ? GO:0006826 ... Q76HJ9 30558715
    475392 6hcp:A (1.83) BS02 C8E ? GO:0006826 ... Q76HJ9 30558715
    475393 6hcp:A (1.83) BS03 C8E ? GO:0006826 ... Q76HJ9 30558715
    475394 6hcp:A (1.83) BS04 C8E ? GO:0006826 ... Q76HJ9 30558715
    475395 6hcp:B (1.83) BS01 C8E ? GO:0006826 ... Q76HJ9 30558715
    475396 6hcp:B (1.83) BS02 C8E ? GO:0006826 ... Q76HJ9 30558715
    475397 6hcp:B (1.83) BS03 C8E ? GO:0006826 ... Q76HJ9 30558715
    475398 6hcp:B (1.83) BS04 C8E ? GO:0006826 ... Q76HJ9 30558715
    475399 6hcp:B (1.83) BS05 C8E ? GO:0006826 ... Q76HJ9 30558715
    475400 6hcp:C (1.83) BS01 C8E ? GO:0006826 ... Q76HJ9 30558715

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).