SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    475601 6hd6:B (2.3) BS01 STI 2.7.10.2 GO:0004672 ... P00520 30137981 BindingDB: IC50=10.8nM
    475602 6hd7:C (3.4) BS01 rna ? GO:0002181 ... P0CX27 30559462
    475603 6hd7:D (3.4) BS01 rna ? GO:0002181 ... P0CX25 30559462
    475604 6hd7:E (3.4) BS01 rna ? GO:0002181 ... P0CX45 30559462
    475605 6hd7:F (3.4) BS01 rna ? GO:0000027 ... P14126 30559462
    475606 6hd7:G (3.4) BS01 rna ? GO:0002181 ... P10664 30559462
    475607 6hd7:G (3.4) BS02 rna ? GO:0002181 ... P10664 30559462
    475608 6hd7:H (3.4) BS01 rna ? GO:0000027 ... P26321 30559462
    475609 6hd7:H (3.4) BS02 rna ? GO:0000027 ... P26321 30559462
    475610 6hd7:I (3.4) BS01 rna ? GO:0000027 ... Q02326 30559462
    475611 6hd7:J (3.4) BS01 rna ? GO:0000463 ... P05737 30559462
    475612 6hd7:J (3.4) BS02 rna ? GO:0000463 ... P05737 30559462
    475613 6hd7:K (3.4) BS01 rna ? GO:0000470 ... P17076 30559462
    475614 6hd7:K (3.4) BS02 rna ? GO:0000470 ... P17076 30559462
    475615 6hd7:L (3.4) BS01 rna ? GO:0002181 ... P05738 30559462
    475616 6hd7:M (3.4) BS01 rna ? GO:0000027 ... P0C0W9 30559462
    475617 6hd7:M (3.4) BS02 rna ? GO:0000027 ... P0C0W9 30559462
    475618 6hd7:M (3.4) BS03 rna ? GO:0000027 ... P0C0W9 30559462
    475619 6hd7:N (3.4) BS01 rna ? GO:0002181 ... Q12690 30559462
    475620 6hd7:N (3.4) BS02 rna ? GO:0002181 ... Q12690 30559462
    475621 6hd7:O (3.4) BS01 rna ? GO:0000027 ... P36105 30559462
    475622 6hd7:P (3.4) BS01 rna ? GO:0002181 ... P05748 30559462
    475623 6hd7:P (3.4) BS02 rna ? GO:0002181 ... P05748 30559462
    475624 6hd7:Q (3.4) BS01 rna ? GO:0000470 ... P26784 30559462
    475625 6hd7:R (3.4) BS01 rna ? GO:0000448 ... P05740 30559462
    475626 6hd7:R (3.4) BS02 rna ? GO:0000448 ... P05740 30559462
    475627 6hd7:S (3.4) BS01 rna ? GO:0002181 ... P0CX49 30559462
    475628 6hd7:T (3.4) BS01 rna ? GO:0002181 ... P0CX82 30559462
    475629 6hd7:U (3.4) BS01 rna ? GO:0002181 ... P0CX23 30559462
    475630 6hd7:U (3.4) BS02 rna ? GO:0002181 ... P0CX23 30559462
    475631 6hd7:V (3.4) BS01 rna ? GO:0002181 ... Q02753 30559462
    475632 6hd7:V (3.4) BS02 rna ? GO:0002181 ... Q02753 30559462
    475633 6hd7:W (3.4) BS01 rna ? GO:0002181 ... P05749 30559462
    475634 6hd7:X (3.4) BS01 rna ? GO:0002181 ... P0CX41 30559462
    475635 6hd7:Y (3.4) BS01 rna ? GO:0002181 ... P04449 30559462
    475636 6hd7:Z (3.4) BS01 rna ? GO:0000027 ... P04456 30559462
    475637 6hd7:Z (3.4) BS02 rna ? GO:0000027 ... P04456 30559462
    475638 6hd7:a (3.4) BS01 rna ? GO:0002181 ... P05743 30559462
    475639 6hd7:a (3.4) BS02 rna ? GO:0002181 ... P05743 30559462
    475640 6hd7:b (3.4) BS01 rna ? GO:0002181 ... P0C2H6 30559462
    475641 6hd7:c (3.4) BS01 rna ? GO:0002181 ... P02406 30559462
    475642 6hd7:d (3.4) BS01 rna ? GO:0002181 ... P05747 30559462
    475643 6hd7:e (3.4) BS01 rna ? GO:0002181 ... P14120 30559462
    475644 6hd7:f (3.4) BS01 rna ? GO:0002181 ... P0C2H8 30559462
    475645 6hd7:g (3.4) BS01 rna ? GO:0002181 ... P38061 30559462
    475646 6hd7:h (3.4) BS01 rna ? GO:0000027 ... P05744 30559462
    475647 6hd7:i (3.4) BS01 rna ? GO:0002181 ... P87262 30559462
    475648 6hd7:j (3.4) BS01 rna ? GO:0000463 ... P0CX84 30559462
    475649 6hd7:j (3.4) BS02 rna ? GO:0000463 ... P0CX84 30559462
    475650 6hd7:k (3.4) BS01 rna ? GO:0002181 ... P05745 30559462
    475651 6hd7:l (3.4) BS01 rna ? GO:0000448 ... P49166 30559462
    475652 6hd7:l (3.4) BS02 rna ? GO:0000448 ... P49166 30559462
    475653 6hd7:m (3.4) BS01 rna ? GO:0002181 ... P49167 30559462
    475654 6hd7:n (3.4) BS01 rna ? GO:0002181 ... P04650 30559462
    475655 6hd7:n (3.4) BS02 rna ? GO:0002181 ... P04650 30559462
    475656 6hd7:o (3.4) BS01 rna ? GO:0000027 ... P0CH08 30559462
    475657 6hd7:r (3.4) BS01 rna N/A N/A N/A 30559462
    475658 6hd7:s (3.4) BS01 rna ? GO:0000027 ... P41805 30559462
    475659 6hd7:s (3.4) BS02 rna ? GO:0000027 ... P41805 30559462
    475660 6hd7:s (3.4) BS03 rna ? GO:0000027 ... P41805 30559462
    475661 6hd7:s (3.4) BS04 rna ? GO:0000027 ... P41805 30559462
    475662 6hd7:t (3.4) BS01 rna ? GO:0004596 ... P12945 30559462
    475663 6hd7:v (3.4) BS01 rna 2.3.1.258 GO:0004596 ... Q08689 30559462
    475664 6hd8:A (2.4) BS01 GLC ? GO:0005515 ... P0AEX9 32267231
    475665 6hd8:A (2.4) BS02 GLC ? GO:0005515 ... P0AEX9 32267231
    475666 6hd9:A (3.5) BS01 GLC ? GO:0005515 ... P0AEX9 32267231
    475667 6hd9:A (3.5) BS02 GLC ? GO:0005515 ... P0AEX9 32267231
    475668 6hda:A (3.8) BS01 GLC ? GO:0005515 ... P0AEX9 32267231
    475669 6hda:A (3.8) BS02 GLC ? GO:0005515 ... P0AEX9 32267231
    475670 6hdb:A (2.9) BS01 GLC ? GO:0005515 ... P0AEX9 32267231
    475671 6hdb:A (2.9) BS02 GLC ? GO:0005515 ... P0AEX9 32267231
    475672 6hdc:A (3.4) BS01 GLC ? GO:0005515 ... P0AEX9 32267231
    475673 6hdc:A (3.4) BS02 GLC ? GO:0005515 ... P0AEX9 32267231
    475674 6hde:A (1.82) BS01 DUP 3.6.1.23 GO:0000287 ... P06968 31174420 MOAD: Kd=60.8nM
    475675 6hde:A (1.82) BS02 DUP 3.6.1.23 GO:0000287 ... P06968 31174420 MOAD: Kd=60.8nM
    475676 6hde:A (1.82) BS03 DUP 3.6.1.23 GO:0000287 ... P06968 31174420 MOAD: Kd=60.8nM
    475677 6hde:B (1.82) BS01 DUP 3.6.1.23 GO:0000287 ... P06968 31174420 MOAD: Kd=60.8nM
    475678 6hde:B (1.82) BS02 DUP 3.6.1.23 GO:0000287 ... P06968 31174420 MOAD: Kd=60.8nM
    475679 6hde:B (1.82) BS03 DUP 3.6.1.23 GO:0000287 ... P06968 31174420 MOAD: Kd=60.8nM
    475680 6hde:C (1.82) BS01 DUP 3.6.1.23 GO:0000287 ... P06968 31174420
    475681 6hde:C (1.82) BS02 DUP 3.6.1.23 GO:0000287 ... P06968 31174420
    475682 6hdg:A (1.15) BS01 XGP 5.4.2.6 GO:0000287 ... P71447 N/A
    475683 6hdh:A (1.62) BS01 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    475684 6hdh:B (1.62) BS01 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    475685 6hdi:A (2.03) BS01 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    475686 6hdi:B (2.03) BS01 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    475687 6hdj:A (1.16) BS01 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    475688 6hdj:A (1.16) BS02 ALF 5.4.2.6 GO:0000287 ... P71447 N/A
    475689 6hdj:A (1.16) BS03 BG6 5.4.2.6 GO:0000287 ... P71447 N/A
    475690 6hdk:A (1.24) BS01 ALF 5.4.2.6 GO:0000287 ... P71447 N/A
    475691 6hdk:A (1.24) BS02 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    475692 6hdk:A (1.24) BS03 BG6 5.4.2.6 GO:0000287 ... P71447 N/A
    475693 6hdl:A (1.16) BS01 BG6 5.4.2.6 GO:0000287 ... P71447 N/A
    475694 6hdl:A (1.16) BS02 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    475695 6hdl:A (1.16) BS03 MGF 5.4.2.6 GO:0000287 ... P71447 N/A
    475696 6hdm:A (1.3) BS01 MG 5.4.2.6 GO:0000287 ... P71447 N/A
    475697 6hdm:A (1.3) BS02 MGF 5.4.2.6 GO:0000287 ... P71447 N/A
    475698 6hdm:A (1.3) BS03 BG6 5.4.2.6 GO:0000287 ... P71447 N/A
    475699 6hdm:A (1.3) BS04 PDO 5.4.2.6 GO:0000287 ... P71447 N/A
    475700 6hdn:A (1.9) BS01 FZB 3.6.1.- N/A Q6PL18 30226378 MOAD: ic50=3.16uM
    BindingDB: IC50=25119nM
    475701 6hdo:A (2.61) BS01 FZH 3.6.1.- N/A Q6PL18 30226378 BindingDB: IC50=251nM
    475702 6hdp:A (2.3) BS01 FZ5 2.7.12.1 GO:0004672 ... Q92630 N/A
    475703 6hdq:A (1.7) BS01 FZE ? N/A O60885 30226378 MOAD: ic50=5.01uM
    BindingDB: IC50=5012nM
    475704 6hdr:A (2.2) BS01 CC9 2.7.12.1 GO:0004672 ... Q92630 N/A
    475705 6hdt:A (1.54) BS01 BTN ? GO:0009374 ... A0A493R6X0 30369031
    475706 6hdt:B (1.54) BS01 BTN ? GO:0009374 ... A0A493R6X0 30369031
    475707 6hdt:C (1.54) BS01 BTN ? GO:0009374 ... A0A493R6X0 30369031
    475708 6hdt:D (1.54) BS01 BTN ? GO:0009374 ... A0A493R6X0 30369031
    475709 6hdu:A (1.793) BS01 GTP ? GO:0003924 ... P57729 31552791 MOAD: Kd=1.2uM
    475710 6hdu:A (1.793) BS02 MG ? GO:0003924 ... P57729 31552791
    475711 6hdu:B (1.793) BS01 GTP ? GO:0003924 ... P57729 31552791 MOAD: Kd=1.2uM
    475712 6hdu:B (1.793) BS02 MG ? GO:0003924 ... P57729 31552791
    475713 6hdu:C (1.793) BS01 GTP ? GO:0003924 ... P57729 31552791 MOAD: Kd=1.2uM
    475714 6hdu:C (1.793) BS02 MG ? GO:0003924 ... P57729 31552791
    475715 6hdu:D (1.793) BS01 GTP ? GO:0003924 ... P57729 31552791 MOAD: Kd=1.2uM
    475716 6hdu:D (1.793) BS02 MG ? GO:0003924 ... P57729 31552791
    475717 6hdw:A (2.3) BS01 8LE 6.2.1.- GO:0000166 ... I3VE75 31145912
    475718 6hdx:A (2.2) BS01 8LH 6.2.1.- GO:0000166 ... I3VE75 31145912
    475719 6hdx:A (2.2) BS02 HIU 6.2.1.- GO:0000166 ... I3VE75 31145912
    475720 6hdy:A (2.2) BS01 3HL 6.2.1.- GO:0000166 ... I3VE75 31145912
    475721 6hdy:A (2.2) BS02 8LQ 6.2.1.- GO:0000166 ... I3VE75 31145912
    475722 6hdz:A (2.06) BS01 FZK 6.1.1.11 GO:0000166 ... Q9I0M6 31869198
    475723 6hdz:B (2.06) BS01 FZK 6.1.1.11 GO:0000166 ... Q9I0M6 31869198
    475724 6he0:A (2.31) BS01 8LE 6.2.1.- GO:0000166 ... I3VE75 31145912
    475725 6he0:A (2.31) BS02 AMP 6.2.1.- GO:0000166 ... I3VE75 31145912
    475726 6he0:A (2.31) BS03 COA 6.2.1.- GO:0000166 ... I3VE75 31145912
    475727 6he1:A (2.22) BS01 FZT 6.1.1.11 GO:0000166 ... Q9I0M6 31869198
    475728 6he1:B (2.22) BS01 FZT 6.1.1.11 GO:0000166 ... Q9I0M6 31869198
    475729 6he2:A (2.3) BS01 AMP 6.2.1.- GO:0000166 ... I3VE75 31145912
    475730 6he2:A (2.3) BS02 8LE 6.2.1.- GO:0000166 ... I3VE75 31145912
    475731 6he2:A (2.3) BS03 COA 6.2.1.- GO:0000166 ... I3VE75 31145912
    475732 6he2:B (2.3) BS01 AMP 6.2.1.- GO:0000166 ... I3VE75 31145912
    475733 6he2:B (2.3) BS02 8LE 6.2.1.- GO:0000166 ... I3VE75 31145912
    475734 6he2:B (2.3) BS03 COA 6.2.1.- GO:0000166 ... I3VE75 31145912
    475735 6he3:A (2.16) BS01 FZQ 6.1.1.11 GO:0000166 ... Q9I0M6 31869198
    475736 6he3:B (2.16) BS01 FZQ 6.1.1.11 GO:0000166 ... Q9I0M6 31869198
    475737 6he4:H (4.85) BS01 ATP ? GO:0005524 ... O28303 30559193
    475738 6he4:I (4.85) BS01 ATP ? GO:0005524 ... O28303 30559193
    475739 6he4:I (4.85) BS02 ATP ? GO:0005524 ... O28303 30559193
    475740 6he4:J (4.85) BS01 ATP ? GO:0005524 ... O28303 30559193
    475741 6he4:J (4.85) BS02 ATP ? GO:0005524 ... O28303 30559193
    475742 6he4:K (4.85) BS01 ATP ? GO:0005524 ... O28303 30559193
    475743 6he4:L (4.85) BS01 ATP ? GO:0005524 ... O28303 30559193
    475744 6he4:L (4.85) BS02 ADP ? GO:0005524 ... O28303 30559193
    475745 6he5:A (4.12) BS01 peptide 3.4.25.1 GO:0000502 ... O29760 30559193
    475746 6he5:B (4.12) BS01 peptide 3.4.25.1 GO:0000502 ... O29760 30559193
    475747 6he5:B (4.12) BS02 peptide 3.4.25.1 GO:0000502 ... O29760 30559193
    475748 6he5:C (4.12) BS01 peptide 3.4.25.1 GO:0000502 ... O29760 30559193
    475749 6he5:D (4.12) BS01 peptide 3.4.25.1 GO:0000502 ... O29760 30559193
    475750 6he5:D (4.12) BS02 peptide 3.4.25.1 GO:0000502 ... O29760 30559193
    475751 6he5:E (4.12) BS01 peptide 3.4.25.1 GO:0000502 ... O29760 30559193
    475752 6he5:E (4.12) BS02 peptide 3.4.25.1 GO:0000502 ... O29760 30559193
    475753 6he5:F (4.12) BS01 peptide 3.4.25.1 GO:0000502 ... O29760 30559193
    475754 6he5:G (4.12) BS01 peptide 3.4.25.1 GO:0000502 ... O29760 30559193
    475755 6he6:A (2.0) BS01 CAT ? GO:0016020 ... Q04LE4 30696736
    475756 6he8:I (6.86) BS01 ATP ? GO:0000502 ... O28303 30559193
    475757 6he8:J (6.86) BS01 ATP ? GO:0000502 ... O28303 30559193
    475758 6he8:J (6.86) BS02 ATP ? GO:0000502 ... O28303 30559193
    475759 6he8:K (6.86) BS01 ATP ? GO:0000502 ... O28303 30559193
    475760 6he8:K (6.86) BS02 ATP ? GO:0000502 ... O28303 30559193
    475761 6he8:L (6.86) BS01 ATP ? GO:0000502 ... O28303 30559193
    475762 6he8:L (6.86) BS02 ATP ? GO:0000502 ... O28303 30559193
    475763 6he8:M (6.86) BS01 ATP ? GO:0000502 ... O28303 30559193
    475764 6he8:M (6.86) BS02 ADP ? GO:0000502 ... O28303 30559193
    475765 6he9:H (6.35) BS01 ATP ? GO:0000502 ... O28303 30559193
    475766 6he9:I (6.35) BS01 ATP ? GO:0000502 ... O28303 30559193
    475767 6he9:I (6.35) BS02 ATP ? GO:0000502 ... O28303 30559193
    475768 6he9:J (6.35) BS01 ATP ? GO:0000502 ... O28303 30559193
    475769 6he9:J (6.35) BS02 ATP ? GO:0000502 ... O28303 30559193
    475770 6he9:K (6.35) BS01 ATP ? GO:0000502 ... O28303 30559193
    475771 6he9:K (6.35) BS02 ATP ? GO:0000502 ... O28303 30559193
    475772 6he9:L (6.35) BS01 ADP ? GO:0000502 ... O28303 30559193
    475773 6hea:H (7.04) BS01 ATP ? GO:0000502 ... O28303 30559193
    475774 6hea:I (7.04) BS01 ATP ? GO:0000502 ... O28303 30559193
    475775 6hea:I (7.04) BS02 ATP ? GO:0000502 ... O28303 30559193
    475776 6hea:J (7.04) BS01 ATP ? GO:0000502 ... O28303 30559193
    475777 6hea:J (7.04) BS02 ATP ? GO:0000502 ... O28303 30559193
    475778 6hea:J (7.04) BS03 MG ? GO:0000502 ... O28303 30559193
    475779 6hea:K (7.04) BS01 ADP ? GO:0000502 ... O28303 30559193
    475780 6hea:K (7.04) BS02 ATP ? GO:0000502 ... O28303 30559193
    475781 6hea:L (7.04) BS01 ADP ? GO:0000502 ... O28303 30559193
    475782 6hea:M (7.04) BS01 ATP ? GO:0000502 ... O28303 30559193
    475783 6heb:A (1.75) BS01 CA 3.2.1.18 GO:0004308 ... P03472 N/A
    475784 6heb:A (1.75) BS02 G39 3.2.1.18 GO:0004308 ... P03472 N/A
    475785 6hec:H (6.95) BS01 ATP ? GO:0000502 ... O28303 30559193
    475786 6hec:H (6.95) BS02 ATP ? GO:0000502 ... O28303 30559193
    475787 6hec:I (6.95) BS01 ATP ? GO:0000502 ... O28303 30559193
    475788 6hec:I (6.95) BS02 ATP ? GO:0000502 ... O28303 30559193
    475789 6hec:J (6.95) BS01 ATP ? GO:0000502 ... O28303 30559193
    475790 6hec:J (6.95) BS02 ADP ? GO:0000502 ... O28303 30559193
    475791 6hec:L (6.95) BS01 ATP ? GO:0000502 ... O28303 30559193
    475792 6hec:M (6.95) BS01 ATP ? GO:0000502 ... O28303 30559193
    475793 6hec:M (6.95) BS02 ATP ? GO:0000502 ... O28303 30559193
    475794 6hed:H (6.95) BS01 ATP ? GO:0000502 ... O28303 30559193
    475795 6hed:H (6.95) BS02 ATP ? GO:0000502 ... O28303 30559193
    475796 6hed:I (6.95) BS01 ATP ? GO:0000502 ... O28303 30559193
    475797 6hed:I (6.95) BS02 ADP ? GO:0000502 ... O28303 30559193
    475798 6hed:K (6.95) BS01 ATP ? GO:0000502 ... O28303 30559193
    475799 6hed:L (6.95) BS01 ATP ? GO:0000502 ... O28303 30559193
    475800 6hed:L (6.95) BS02 ATP ? GO:0000502 ... O28303 30559193

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).