SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    480801 6i8a:B (2.652) BS07 CA 2.7.7.7
    3.1.11.-
    GO:0000166 ... P21951 30670696
    480802 6i8a:B (2.652) BS08 FE 2.7.7.7
    3.1.11.-
    GO:0000166 ... P21951 30670696
    480803 6i8b:B (1.76) BS01 H7T ? GO:0007276 ... Q9Y657 31550156 BindingDB: Kd=111nM, EC50=270nM, IC50=33nM
    480804 6i8b:B (1.76) BS02 H7T ? GO:0007276 ... Q9Y657 31550156 BindingDB: Kd=111nM, EC50=270nM, IC50=33nM
    480805 6i8b:E (1.76) BS01 H7T ? GO:0007276 ... Q9Y657 31550156 BindingDB: Kd=111nM, EC50=270nM, IC50=33nM
    480806 6i8d:A (3.2) BS01 H7N N/A GO:0016787 ... N/A N/A
    480807 6i8d:A (3.2) BS02 H7N N/A GO:0016787 ... N/A N/A
    480808 6i8d:B (3.2) BS01 H7N N/A GO:0016787 ... N/A N/A
    480809 6i8d:B (3.2) BS02 H7N N/A GO:0016787 ... N/A N/A
    480810 6i8e:A (1.78) BS01 HEM N/A GO:0004601 ... N/A 31316799
    480811 6i8e:B (1.78) BS01 HEM N/A GO:0004601 ... N/A 31316799
    480812 6i8i:A (1.83) BS01 HEM N/A GO:0004601 ... N/A 31316799
    480813 6i8i:B (1.83) BS01 HEM N/A GO:0004601 ... N/A 31316799
    480814 6i8j:A (1.9) BS01 HEM N/A GO:0004601 ... N/A 31316799
    480815 6i8j:B (1.9) BS01 HEM N/A GO:0004601 ... N/A 31316799
    480816 6i8k:A (1.98) BS01 HEM N/A GO:0004601 ... N/A 31316799
    480817 6i8k:B (1.98) BS01 HEM N/A GO:0004601 ... N/A 31316799
    480818 6i8l:B (1.58) BS01 H7Q ? GO:0007276 ... Q9Y657 31550156 BindingDB: IC50=390nM
    480819 6i8m:A (2.1) BS01 H7W 2.4.2.-
    2.4.2.30
    GO:0003950 ... P26446 30996792
    480820 6i8o:A (1.7) BS01 HEM N/A GO:0004601 ... N/A 31316799
    480821 6i8o:B (1.7) BS01 HEM N/A GO:0004601 ... N/A 31316799
    480822 6i8p:A (1.73) BS01 HEM 1.11.1.-
    4.98.1.1
    GO:0004601 ... Q9RKQ2 31316799
    480823 6i8p:B (1.73) BS01 HEM 1.11.1.-
    4.98.1.1
    GO:0004601 ... Q9RKQ2 31316799
    480824 6i8q:A (1.74) BS01 HEM 1.11.1.-
    4.98.1.1
    GO:0004601 ... Q9RKQ2 31316799
    480825 6i8q:B (1.74) BS01 HEM 1.11.1.-
    4.98.1.1
    GO:0004601 ... Q9RKQ2 31316799
    480826 6i8r:A (2.0) BS01 GDP N/A GO:0003746 ... N/A N/A
    480827 6i8t:A (2.1) BS01 H7Z 2.4.2.-
    2.4.2.30
    GO:0003950 ... P26446 30996792
    480828 6i8v:A (1.991) BS01 ATP ? GO:0005886 ... P39760 30753894
    480829 6i8v:A (1.991) BS02 CA ? GO:0005886 ... P39760 30753894
    480830 6i8w:B (2.0) BS01 11A 3.1.1.3 GO:0003824 ... Q9KJG6 35536643
    480831 6i8x:A (2.3) BS01 VCA ? GO:0008289 ... P55776 31273060
    480832 6i8x:B (2.3) BS01 VCA ? GO:0008289 ... P55776 31273060
    480833 6i8y:A (1.52) BS01 2OD ? GO:0007276 ... Q9Y657 31550156 BindingDB: Kd=110nM, IC50=186nM
    480834 6i8y:A (1.52) BS02 2OD ? GO:0007276 ... Q9Y657 31550156 BindingDB: Kd=110nM, IC50=186nM
    480835 6i8z:A (1.99) BS01 H82 2.7.10.2 GO:0004672 ... Q05397 30739444 MOAD: ic50=17nM
    480836 6i90:A (1.803) BS01 MN3 1.17.4.1 GO:0009263 ... Q5KW80 31591267
    480837 6i90:A (1.803) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 31591267
    480838 6i91:A (1.78) BS01 HEM 1.11.1.-
    4.98.1.1
    GO:0004601 ... Q9RKQ2 N/A
    480839 6i91:B (1.78) BS01 HEM 1.11.1.-
    4.98.1.1
    GO:0004601 ... Q9RKQ2 N/A
    480840 6i92:A (1.849) BS01 MN 1.17.4.1 GO:0009263 ... Q5KW80 31591267
    480841 6i92:A (1.849) BS02 FE2 1.17.4.1 GO:0009263 ... Q5KW80 31591267
    480842 6i93:A (2.101) BS01 FE 1.17.4.1 GO:0009263 ... Q5KW80 31591267
    480843 6i93:A (2.101) BS02 FE 1.17.4.1 GO:0009263 ... Q5KW80 31591267
    480844 6i93:A (2.101) BS03 OCA 1.17.4.1 GO:0009263 ... Q5KW80 31591267
    480845 6i94:A (1.703) BS01 MN 1.17.4.1 GO:0009263 ... Q5KW80 31591267
    480846 6i94:A (1.703) BS02 MN 1.17.4.1 GO:0009263 ... Q5KW80 31591267
    480847 6i94:A (1.703) BS03 OCA 1.17.4.1 GO:0009263 ... Q5KW80 31591267
    480848 6i95:A (1.646) BS01 MN 1.17.4.1 GO:0009263 ... Q5KW80 31591267
    480849 6i95:A (1.646) BS02 FE2 1.17.4.1 GO:0009263 ... Q5KW80 31591267
    480850 6i95:A (1.646) BS03 OCA 1.17.4.1 GO:0009263 ... Q5KW80 31591267
    480851 6i96:A (1.85) BS01 0UE ? GO:0009279 ... Q9I116 31385808 MOAD: Kd=100nM
    480852 6i97:A (3.35) BS01 0UE ? GO:0006826 ... Q9I116 31385808
    480853 6i97:B (3.35) BS01 0UE ? GO:0006826 ... Q9I116 31385808
    480854 6i98:A (2.8) BS01 C8E ? GO:0009279 ... Q9I116 31385808
    480855 6i99:A (2.001) BS01 H88 2.7.10.2 GO:0004672 ... P51813 N/A
    480856 6i99:B (2.001) BS01 H88 2.7.10.2 GO:0004672 ... P51813 N/A
    480857 6i9a:A (1.2) BS01 CA 3.4.22.47 GO:0006508 ... Q51817 30894633
    480858 6i9a:A (1.2) BS02 CA 3.4.22.47 GO:0006508 ... Q51817 30894633
    480859 6i9a:A (1.2) BS03 H8E 3.4.22.47 GO:0006508 ... Q51817 30894633
    480860 6i9a:B (1.2) BS01 CA 3.4.22.47 GO:0006508 ... Q51817 30894633
    480861 6i9a:B (1.2) BS02 CA 3.4.22.47 GO:0006508 ... Q51817 30894633
    480862 6i9a:B (1.2) BS03 H8E 3.4.22.47 GO:0006508 ... Q51817 30894633
    480863 6i9h:A (-1.00) BS01 ZN 2.3.2.27 N/A Q13263 31028095
    480864 6i9h:A (-1.00) BS02 ZN 2.3.2.27 N/A Q13263 31028095
    480865 6i9k:A (2.145) BS01 RET ? GO:0004930 ... B1B1U5 31249143
    480866 6i9l:A (1.53) BS01 MN 1.14.11.73
    3.4.-.-
    N/A Q8N371 36450832
    480867 6i9l:A (1.53) BS02 PD2 1.14.11.73
    3.4.-.-
    N/A Q8N371 36450832
    480868 6i9m:A (1.65) BS01 MN 1.14.11.73
    3.4.-.-
    N/A Q8N371 36450832
    480869 6i9m:A (1.65) BS02 2HG 1.14.11.73
    3.4.-.-
    N/A Q8N371 36450832
    480870 6i9n:A (1.361) BS01 MN 1.14.11.73
    3.4.-.-
    N/A Q8N371 36450832
    480871 6i9n:A (1.361) BS02 S2G 1.14.11.73
    3.4.-.-
    N/A Q8N371 36450832
    480872 6i9p:A (1.25) BS01 MG 1.16.3.1 GO:0004322 ... P07798 31075719
    480873 6i9r:0 (3.9) BS01 rna ? GO:0003723 ... Q9BYC8 33910005
    480874 6i9r:0 (3.9) BS02 ZN ? GO:0003723 ... Q9BYC8 33910005
    480875 6i9r:1 (3.9) BS01 rna ? GO:0003735 ... O75394 33910005
    480876 6i9r:2 (3.9) BS01 rna ? GO:0003735 ... Q9BQ48 33910005
    480877 6i9r:3 (3.9) BS01 rna ? GO:0003735 ... Q9NZE8 33910005
    480878 6i9r:4 (3.9) BS01 rna ? GO:0003735 ... Q9P0J6 33910005
    480879 6i9r:4 (3.9) BS02 ZN ? GO:0003735 ... Q9P0J6 33910005
    480880 6i9r:5 (3.9) BS01 rna ? GO:0003723 ... Q9BZE1 33910005
    480881 6i9r:6 (3.9) BS01 rna ? GO:0005515 ... Q96DV4 33910005
    480882 6i9r:6 (3.9) BS02 rna ? GO:0005515 ... Q96DV4 33910005
    480883 6i9r:8 (3.9) BS01 rna ? GO:0003723 ... Q9NQ50 33910005
    480884 6i9r:9 (3.9) BS01 rna ? GO:0003723 ... Q8IXM3 33910005
    480885 6i9r:D (3.9) BS01 rna ? GO:0003723 ... Q5T653 33910005
    480886 6i9r:E (3.9) BS01 rna ? GO:0003723 ... P09001 33910005
    480887 6i9r:F (3.9) BS01 rna ? GO:0003723 ... Q9BYD3 33910005
    480888 6i9r:H (3.9) BS01 rna ? GO:0003723 ... Q9BYD2 33910005
    480889 6i9r:I (3.9) BS01 rna ? GO:0003723 ... Q7Z7H8 33910005
    480890 6i9r:J (3.9) BS01 rna ? GO:0003723 ... Q9Y3B7 33910005
    480891 6i9r:K (3.9) BS01 rna ? GO:0003723 ... Q9BYD1 33910005
    480892 6i9r:L (3.9) BS01 rna ? GO:0003723 ... Q6P1L8 33910005
    480893 6i9r:M (3.9) BS01 rna ? GO:0003723 ... Q9P015 33910005
    480894 6i9r:N (3.9) BS01 rna ? GO:0003735 ... Q9NX20 33910005
    480895 6i9r:O (3.9) BS01 rna ? GO:0003735 ... Q9NRX2 33910005
    480896 6i9r:P (3.9) BS01 rna ? GO:0003735 ... A8K9D2 33910005
    480897 6i9r:P (3.9) BS02 rna ? GO:0003735 ... A8K9D2 33910005
    480898 6i9r:Q (3.9) BS01 rna ? GO:0003735 ... P49406 33910005
    480899 6i9r:R (3.9) BS01 rna ? GO:0003723 ... Q9BYC9 33910005
    480900 6i9r:S (3.9) BS01 rna ? GO:0003723 ... Q7Z2W9 33910005
    480901 6i9r:T (3.9) BS01 rna ? GO:0003735 ... E7ESL0 33910005
    480902 6i9r:T (3.9) BS02 G ? GO:0003735 ... E7ESL0 33910005
    480903 6i9r:U (3.9) BS01 rna ? GO:0001650 ... Q16540 33910005
    480904 6i9r:V (3.9) BS01 rna ? GO:0003723 ... Q96A35 33910005
    480905 6i9r:W (3.9) BS01 rna ? GO:0003723 ... Q9P0M9 33910005
    480906 6i9r:X (3.9) BS01 rna ? GO:0003723 ... Q13084 33910005
    480907 6i9r:Y (3.9) BS01 rna ? GO:0003735 ... Q9HD33 33910005
    480908 6i9r:Z (3.9) BS01 rna ? GO:0003735 ... Q8TCC3 33910005
    480909 6i9r:a (3.9) BS01 rna ? GO:0003723 ... Q9Y6G3 33910005
    480910 6i9r:b (3.9) BS01 rna ? GO:0003723 ... Q8N983 33910005
    480911 6i9r:c (3.9) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 33910005
    480912 6i9r:d (3.9) BS01 rna ? GO:0003723 ... Q9BRJ2 33910005
    480913 6i9r:f (3.9) BS01 rna ? GO:0005515 ... Q96GC5 33910005
    480914 6i9r:f (3.9) BS02 rna ? GO:0005515 ... Q96GC5 33910005
    480915 6i9r:g (3.9) BS01 rna ? GO:0003735 ... Q13405 33910005
    480916 6i9r:i (3.9) BS01 rna ? GO:0003735 ... Q4U2R6 33910005
    480917 6i9r:j (3.9) BS01 rna ? GO:0003735 ... A8K7J6 33910005
    480918 6i9r:l (3.9) BS01 rna ? GO:0003723 ... Q6P161 33910005
    480919 6i9r:m (3.9) BS01 rna ? GO:0003735 ... Q7Z7F7 33910005
    480920 6i9r:o (3.9) BS01 rna ? GO:0003735 ... Q9BQC6 33910005
    480921 6i9r:q (3.9) BS01 rna ? GO:0005515 ... Q8TAE8 33910005
    480922 6i9r:r (3.9) BS01 rna ? GO:0003735 ... Q9NVS2 33910005
    480923 6i9r:s (3.9) BS01 rna ? GO:0003723 ... Q9NP92 33910005
    480924 6i9t:A (1.2) BS01 FE2 1.16.3.1 GO:0004322 ... P07798 31075719
    480925 6i9t:A (1.2) BS02 MG 1.16.3.1 GO:0004322 ... P07798 31075719
    480926 6i9t:A (1.2) BS03 MG 1.16.3.1 GO:0004322 ... P07798 31075719
    480927 6i9w:A (1.55) BS01 BU3 N/A N/A N/A 30911023
    480928 6i9w:B (1.55) BS01 BU3 N/A N/A N/A 30911023
    480929 6i9w:C (1.55) BS01 BU3 N/A N/A N/A 30911023
    480930 6i9w:C (1.55) BS02 BU3 N/A N/A N/A 30911023
    480931 6i9x:A (1.6) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 N/A
    480932 6i9y:C (2.14) BS01 NI 3.5.1.5 GO:0005737 ... P41020 30996797
    480933 6i9y:C (2.14) BS02 NI 3.5.1.5 GO:0005737 ... P41020 30996797
    480934 6i9y:C (2.14) BS03 AU 3.5.1.5 GO:0005737 ... P41020 30996797
    480935 6i9z:A (1.6) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 N/A
    480936 6ia1:A (2.36) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 N/A
    480937 6ia1:A (2.36) BS02 AR 1.7.3.3 GO:0004846 ... Q00511 N/A
    480938 6ia3:A (1.69) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 N/A
    480939 6ia3:A (1.69) BS02 AR 1.7.3.3 GO:0004846 ... Q00511 N/A
    480940 6ia6:A (2.7) BS01 DCA 2.3.1.311 GO:0003824 ... A0A1C7D1B7 30733442
    480941 6ia6:A (2.7) BS02 FES 2.3.1.311 GO:0003824 ... A0A1C7D1B7 30733442
    480942 6ia7:A (2.3) BS01 GTP ? GO:0003924 ... Q381A3 30940671
    480943 6ia7:A (2.3) BS02 MG ? GO:0003924 ... Q381A3 30940671
    480944 6ia7:B (2.3) BS01 GTP ? GO:0003924 ... Q381A3 30940671
    480945 6ia9:aaa (1.8) BS01 AZA 1.7.3.3 GO:0004846 ... Q00511 N/A
    480946 6ia9:aaa (1.8) BS02 AZA 1.7.3.3 GO:0004846 ... Q00511 N/A
    480947 6ia9:aaa (1.8) BS03 AR 1.7.3.3 GO:0004846 ... Q00511 N/A
    480948 6ia9:aba (1.8) BS01 AR 1.7.3.3 GO:0004846 ... Q00511 N/A
    480949 6ia9:aba (1.8) BS02 AZA 1.7.3.3 GO:0004846 ... Q00511 N/A
    480950 6iaa:A (3.6) BS01 MAN ? GO:0007155 ... Q9HCK4 30853216
    480951 6iaa:B (3.6) BS01 MAN ? GO:0007155 ... Q9HCK4 30853216
    480952 6iae:A (2.49) BS01 GTP ? GO:0003924 ... Q381A3 30940671
    480953 6iae:A (2.49) BS02 MG ? GO:0003924 ... Q381A3 30940671
    480954 6iae:B (2.49) BS01 GTP ? GO:0003924 ... Q381A3 30940671
    480955 6iaf:A (1.35) BS01 FE2 1.16.3.1 GO:0004322 ... P07798 31075719
    480956 6iaf:A (1.35) BS02 FE2 1.16.3.1 GO:0004322 ... P07798 31075719
    480957 6iaf:A (1.35) BS03 FE2 1.16.3.1 GO:0004322 ... P07798 31075719
    480958 6iag:A (2.0) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    480959 6iag:A (2.0) BS02 E3Q 3.1.4.53 GO:0004114 ... Q08499 N/A
    480960 6iag:B (2.0) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    480961 6iag:B (2.0) BS02 E3Q 3.1.4.53 GO:0004114 ... Q08499 N/A
    480962 6iag:C (2.0) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    480963 6iag:C (2.0) BS02 E3Q 3.1.4.53 GO:0004114 ... Q08499 N/A
    480964 6iag:D (2.0) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 N/A
    480965 6iag:D (2.0) BS02 E3Q 3.1.4.53 GO:0004114 ... Q08499 N/A
    480966 6iah:A (1.75) BS01 MG ? GO:0003824 ... A0A0Q2QQ54 31373573
    480967 6iah:A (1.75) BS02 MG ? GO:0003824 ... A0A0Q2QQ54 31373573
    480968 6iaj:A (1.62) BS01 FE2 1.16.3.1 GO:0004322 ... P07798 31075719
    480969 6iaj:A (1.62) BS02 FE2 1.16.3.1 GO:0004322 ... P07798 31075719
    480970 6iaj:A (1.62) BS03 FE2 1.16.3.1 GO:0004322 ... P07798 31075719
    480971 6ial:C (1.45) BS01 CA ? GO:0005576 ... P32890 30736336
    480972 6ial:H (1.45) BS01 GAL ? GO:0005576 ... P32890 30736336
    480973 6ial:J (1.45) BS01 GAL ? GO:0005576 ... P32890 30736336
    480974 6iam:A (1.51) BS01 peptide ? GO:0000122 ... P61964 30675988
    480975 6ian:E (3.2) BS01 GTP ? N/A Q381A3 30940671
    480976 6ian:E (3.2) BS02 MG ? N/A Q381A3 30940671
    480977 6iao:A (2.16) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 31125381
    480978 6iao:B (2.16) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 31125381
    480979 6iao:C (2.16) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 31125381
    480980 6iao:D (2.16) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 31125381
    480981 6iaq:A (1.91) BS01 NAP 1.17.1.8 GO:0008839 ... N/A N/A
    480982 6iaq:B (1.91) BS01 NAP 1.17.1.8 GO:0008839 ... N/A N/A
    480983 6iaq:C (1.91) BS01 NAP 1.17.1.8 GO:0008839 ... N/A N/A
    480984 6iaq:D (1.91) BS01 NAP 1.17.1.8 GO:0008839 ... N/A N/A
    480985 6iar:A (1.84) BS01 H8W ? N/A P03372 30640465
    480986 6iat:A (3.3) BS01 peptide ? N/A Q859I3 31663016
    480987 6iat:D (3.3) BS01 peptide ? N/A Q859I3 31663016
    480988 6iat:F (3.3) BS01 peptide ? N/A Q859I2 31663016
    480989 6iau:B (1.97) BS01 NAP ? GO:0000166 ... S9Q235 N/A
    480990 6iav:A (2.0) BS01 CO ? GO:0005507 ... P00282 N/A
    480991 6iav:A (2.0) BS02 CA ? GO:0005507 ... P00282 N/A
    480992 6iav:A (2.0) BS03 CA ? GO:0005507 ... P00282 N/A
    480993 6iav:B (2.0) BS01 CO ? GO:0005507 ... P00282 N/A
    480994 6iav:B (2.0) BS02 CA ? GO:0005507 ... P00282 N/A
    480995 6iav:C (2.0) BS01 CO ? GO:0005507 ... P00282 N/A
    480996 6iav:C (2.0) BS02 CA ? GO:0005507 ... P00282 N/A
    480997 6iav:D (2.0) BS01 CO ? GO:0005507 ... P00282 N/A
    480998 6iaw:B (3.8) BS01 peptide ? N/A Q859I3 31663016
    480999 6iaw:C (3.8) BS01 peptide ? N/A Q859I3 31663016
    481000 6iaw:D (3.8) BS01 peptide ? N/A Q859I2 31663016

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).