SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    481401 6if3:B (1.5) BS01 GTP ? GO:0000281 ... Q15286 30905672
    481402 6if3:B (1.5) BS02 MG ? GO:0000281 ... Q15286 30905672
    481403 6if5:A (2.0) BS01 23G ? GO:0002224 ... B3Y653 30566863
    481404 6if5:A (2.0) BS02 23G ? GO:0002224 ... B3Y653 30566863
    481405 6if5:B (2.0) BS01 23G ? GO:0002224 ... B3Y653 30566863
    481406 6if5:B (2.0) BS02 23G ? GO:0002224 ... B3Y653 30566863
    481407 6if7:A (2.2) BS01 CU ? GO:0046872 ... W5QLL4 30903269
    481408 6if8:A (2.0) BS01 ADE 3.2.2.9 GO:0003824 ... A0KIZ1 N/A
    481409 6if8:B (2.0) BS01 ADE 3.2.2.9 GO:0003824 ... A0KIZ1 N/A
    481410 6if8:C (2.0) BS01 ADE 3.2.2.9 GO:0003824 ... A0KIZ1 N/A
    481411 6if8:D (2.0) BS01 ADE 3.2.2.9 GO:0003824 ... A0KIZ1 N/A
    481412 6ifb:A (1.37) BS01 RM4 ? GO:0030246 ... N9TFI9 31967310
    481413 6ifb:B (1.37) BS01 RM4 ? GO:0030246 ... N9TFI9 31967310
    481414 6ifc:A (1.99) BS01 peptide 3.1.-.- GO:0000287 ... Q8ZM86 31908032
    481415 6ifc:A (1.99) BS02 CA 3.1.-.- GO:0000287 ... Q8ZM86 31908032
    481416 6ifc:C (1.99) BS01 peptide 3.1.-.- GO:0000287 ... Q8ZM86 31908032
    481417 6ifc:C (1.99) BS02 CA 3.1.-.- GO:0000287 ... Q8ZM86 31908032
    481418 6ifc:E (1.99) BS01 peptide 3.1.-.- GO:0000287 ... Q8ZM86 31908032
    481419 6ifc:E (1.99) BS02 CA 3.1.-.- GO:0000287 ... Q8ZM86 31908032
    481420 6ifc:G (1.99) BS01 peptide 3.1.-.- GO:0000287 ... Q8ZM86 31908032
    481421 6ifc:G (1.99) BS02 CA 3.1.-.- GO:0000287 ... Q8ZM86 31908032
    481422 6ifd:A (2.3) BS01 CDP N/A N/A N/A 31205019
    481423 6ifd:B (2.3) BS01 CDP N/A N/A N/A 31205019
    481424 6ifd:C (2.3) BS01 CDP N/A N/A N/A 31205019
    481425 6iff:A (1.83) BS01 ZN 3.4.11.2 GO:0005737 ... Q9RVZ5 31923495
    481426 6iff:A (1.83) BS02 TYR 3.4.11.2 GO:0005737 ... Q9RVZ5 31923495
    481427 6iff:B (1.83) BS01 ZN 3.4.11.2 GO:0005737 ... Q9RVZ5 31923495
    481428 6iff:B (1.83) BS02 TYR 3.4.11.2 GO:0005737 ... Q9RVZ5 31923495
    481429 6ifg:A (1.9) BS01 peptide 3.4.11.2 GO:0005737 ... Q9RVZ5 31351924
    481430 6ifg:A (1.9) BS02 ZN 3.4.11.2 GO:0005737 ... Q9RVZ5 31351924
    481431 6ifg:A (1.9) BS03 ZN 3.4.11.2 GO:0005737 ... Q9RVZ5 31351924
    481432 6ifg:B (1.9) BS01 peptide 3.4.11.2 GO:0005737 ... Q9RVZ5 31351924
    481433 6ifg:B (1.9) BS02 ZN 3.4.11.2 GO:0005737 ... Q9RVZ5 31351924
    481434 6ifg:B (1.9) BS03 ZN 3.4.11.2 GO:0005737 ... Q9RVZ5 31351924
    481435 6ifh:A (1.8) BS01 MG ? GO:0000160 ... A0A4V8GZZ1 N/A
    481436 6ifj:A (2.4) BS01 peptide ? N/A P0DOX5 N/A
    481437 6ifj:A (2.4) BS02 BMA ? N/A P0DOX5 N/A
    481438 6ifj:B (2.4) BS01 peptide ? N/A P0DOX5 N/A
    481439 6ifj:B (2.4) BS02 BMA ? N/A P0DOX5 N/A
    481440 6ifk:A (3.2) BS01 rna N/A N/A N/A 30503210
    481441 6ifk:A (3.2) BS02 rna N/A N/A N/A 30503210
    481442 6ifk:A (3.2) BS03 ANP N/A N/A N/A 30503210
    481443 6ifk:A (3.2) BS04 ANP N/A N/A N/A 30503210
    481444 6ifk:A (3.2) BS05 MG N/A N/A N/A 30503210
    481445 6ifk:A (3.2) BS06 MG N/A N/A N/A 30503210
    481446 6ifk:A (3.2) BS07 ZN N/A N/A N/A 30503210
    481447 6ifk:B (3.2) BS01 rna N/A N/A N/A 30503210
    481448 6ifk:B (3.2) BS02 rna N/A N/A N/A 30503210
    481449 6ifk:C (3.2) BS01 rna N/A N/A N/A 30503210
    481450 6ifk:D (3.2) BS01 rna N/A N/A N/A 30503210
    481451 6ifk:E (3.2) BS01 rna N/A N/A N/A 30503210
    481452 6ifk:E (3.2) BS02 rna N/A N/A N/A 30503210
    481453 6ifk:F (3.2) BS01 rna N/A N/A N/A 30503210
    481454 6ifk:F (3.2) BS02 rna N/A N/A N/A 30503210
    481455 6ifk:G (3.2) BS01 rna N/A N/A N/A 30503210
    481456 6ifk:G (3.2) BS02 rna N/A N/A N/A 30503210
    481457 6ifk:H (3.2) BS01 rna N/A N/A N/A 30503210
    481458 6ifk:H (3.2) BS02 rna N/A N/A N/A 30503210
    481459 6ifl:A (3.16) BS01 rna N/A N/A N/A 30503210
    481460 6ifl:B (3.16) BS01 rna N/A N/A N/A 30503210
    481461 6ifl:C (3.16) BS01 rna N/A N/A N/A 30503210
    481462 6ifl:D (3.16) BS01 rna N/A N/A N/A 30503210
    481463 6ifl:D (3.16) BS02 rna N/A N/A N/A 30503210
    481464 6ifl:E (3.16) BS01 rna N/A N/A N/A 30503210
    481465 6ifl:E (3.16) BS02 rna N/A N/A N/A 30503210
    481466 6ifl:F (3.16) BS01 rna N/A N/A N/A 30503210
    481467 6ifl:F (3.16) BS02 rna N/A N/A N/A 30503210
    481468 6ifl:G (3.16) BS01 rna N/A N/A N/A 30503210
    481469 6ifl:G (3.16) BS02 rna N/A N/A N/A 30503210
    481470 6ifl:H (3.16) BS01 rna N/A N/A N/A 30503210
    481471 6ifl:H (3.16) BS02 rna N/A N/A N/A 30503210
    481472 6ifm:B (2.804) BS01 dna ? GO:0003677 ... Q7CPV2 31908032
    481473 6ifm:D (2.804) BS01 dna ? GO:0003677 ... Q7CPV2 31908032
    481474 6ifm:F (2.804) BS01 dna ? GO:0003677 ... Q7CPV2 31908032
    481475 6ifm:F (2.804) BS02 dna ? GO:0003677 ... Q7CPV2 31908032
    481476 6ifm:H (2.804) BS01 dna ? GO:0003677 ... Q7CPV2 31908032
    481477 6ifm:H (2.804) BS02 dna ? GO:0003677 ... Q7CPV2 31908032
    481478 6ifn:A (2.9) BS01 rna N/A N/A N/A 30503210
    481479 6ifn:A (2.9) BS02 ZN N/A N/A N/A 30503210
    481480 6ifn:A (2.9) BS03 MN N/A N/A N/A 30503210
    481481 6ifn:B (2.9) BS01 rna N/A N/A N/A 30503210
    481482 6ifn:E (2.9) BS01 rna N/A N/A N/A 30503210
    481483 6ifn:F (2.9) BS01 rna N/A N/A N/A 30503210
    481484 6ifn:G (2.9) BS01 rna N/A N/A N/A 30503210
    481485 6ifn:H (2.9) BS01 rna N/A N/A N/A 30503210
    481486 6ifo:A (3.313) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 30606466
    481487 6ifo:B (3.313) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 30606466
    481488 6ifp:A (1.0) BS01 CU ? GO:0005507 ... P19567 N/A
    481489 6ifp:C (1.0) BS01 CU ? GO:0005507 ... P19567 N/A
    481490 6ifq:A (1.95) BS01 CA 3.1.4.52 GO:0000166 ... A0A0H3AJ04 31647518
    481491 6ifq:B (1.95) BS01 CA 3.1.4.52 GO:0000166 ... A0A0H3AJ04 31647518
    481492 6ifr:A (3.4) BS01 rna N/A N/A N/A 30503210
    481493 6ifr:A (3.4) BS02 ATP N/A N/A N/A 30503210
    481494 6ifr:A (3.4) BS03 ATP N/A N/A N/A 30503210
    481495 6ifr:A (3.4) BS04 MG N/A N/A N/A 30503210
    481496 6ifr:A (3.4) BS05 MG N/A N/A N/A 30503210
    481497 6ifr:B (3.4) BS01 rna N/A N/A N/A 30503210
    481498 6ifr:B (3.4) BS02 rna N/A N/A N/A 30503210
    481499 6ifr:B (3.4) BS03 ATP N/A N/A N/A 30503210
    481500 6ifr:C (3.4) BS01 rna N/A N/A N/A 30503210
    481501 6ifr:D (3.4) BS01 rna N/A N/A N/A 30503210
    481502 6ifr:E (3.4) BS01 rna N/A N/A N/A 30503210
    481503 6ifr:E (3.4) BS02 rna N/A N/A N/A 30503210
    481504 6ifr:F (3.4) BS01 rna N/A N/A N/A 30503210
    481505 6ifr:F (3.4) BS02 rna N/A N/A N/A 30503210
    481506 6ifr:G (3.4) BS01 rna N/A N/A N/A 30503210
    481507 6ifr:G (3.4) BS02 rna N/A N/A N/A 30503210
    481508 6ifr:H (3.4) BS01 rna N/A N/A N/A 30503210
    481509 6ifr:H (3.4) BS02 rna N/A N/A N/A 30503210
    481510 6ift:A (1.9) BS01 SAM 2.1.1.182 GO:0000154 ... P37468 30624914
    481511 6ifu:A (3.05) BS01 rna N/A N/A N/A 30503210
    481512 6ifu:A (3.05) BS02 rna N/A N/A N/A 30503210
    481513 6ifu:B (3.05) BS01 rna N/A N/A N/A 30503210
    481514 6ifu:C (3.05) BS01 rna N/A N/A N/A 30503210
    481515 6ifu:D (3.05) BS01 rna N/A N/A N/A 30503210
    481516 6ifu:D (3.05) BS02 rna N/A N/A N/A 30503210
    481517 6ifu:E (3.05) BS01 rna N/A N/A N/A 30503210
    481518 6ifu:E (3.05) BS02 rna N/A N/A N/A 30503210
    481519 6ifu:F (3.05) BS01 rna N/A N/A N/A 30503210
    481520 6ifu:F (3.05) BS02 rna N/A N/A N/A 30503210
    481521 6ifu:G (3.05) BS01 rna N/A N/A N/A 30503210
    481522 6ifu:G (3.05) BS02 rna N/A N/A N/A 30503210
    481523 6ifu:H (3.05) BS01 rna N/A N/A N/A 30503210
    481524 6ifu:H (3.05) BS02 rna N/A N/A N/A 30503210
    481525 6ify:A (3.8) BS01 rna N/A N/A N/A 30503210
    481526 6ify:A (3.8) BS02 rna N/A N/A N/A 30503210
    481527 6ify:A (3.8) BS03 ZN N/A N/A N/A 30503210
    481528 6ify:B (3.8) BS01 rna N/A N/A N/A 30503210
    481529 6ify:C (3.8) BS01 rna N/A N/A N/A 30503210
    481530 6ify:D (3.8) BS01 rna N/A N/A N/A 30503210
    481531 6ify:E (3.8) BS01 rna N/A N/A N/A 30503210
    481532 6ify:E (3.8) BS02 rna N/A N/A N/A 30503210
    481533 6ify:F (3.8) BS01 rna N/A N/A N/A 30503210
    481534 6ify:F (3.8) BS02 rna N/A N/A N/A 30503210
    481535 6ify:G (3.8) BS01 rna N/A N/A N/A 30503210
    481536 6ify:G (3.8) BS02 rna N/A N/A N/A 30503210
    481537 6ify:H (3.8) BS01 rna N/A N/A N/A 30503210
    481538 6ify:H (3.8) BS02 rna N/A N/A N/A 30503210
    481539 6ifz:A (3.58) BS01 rna N/A N/A N/A 30503210
    481540 6ifz:A (3.58) BS02 rna N/A N/A N/A 30503210
    481541 6ifz:B (3.58) BS01 rna N/A N/A N/A 30503210
    481542 6ifz:C (3.58) BS01 rna N/A N/A N/A 30503210
    481543 6ifz:D (3.58) BS01 rna N/A N/A N/A 30503210
    481544 6ifz:E (3.58) BS01 rna N/A N/A N/A 30503210
    481545 6ifz:E (3.58) BS02 rna N/A N/A N/A 30503210
    481546 6ifz:F (3.58) BS01 rna N/A N/A N/A 30503210
    481547 6ifz:F (3.58) BS02 rna N/A N/A N/A 30503210
    481548 6ifz:G (3.58) BS01 rna N/A N/A N/A 30503210
    481549 6ifz:G (3.58) BS02 rna N/A N/A N/A 30503210
    481550 6ifz:H (3.58) BS01 rna N/A N/A N/A 30503210
    481551 6ifz:H (3.58) BS02 rna N/A N/A N/A 30503210
    481552 6ig0:A (3.37) BS01 rna N/A N/A N/A 30503210
    481553 6ig0:A (3.37) BS02 rna N/A N/A N/A 30503210
    481554 6ig0:A (3.37) BS03 ZN N/A N/A N/A 30503210
    481555 6ig0:A (3.37) BS04 ATP N/A N/A N/A 30503210
    481556 6ig0:A (3.37) BS05 ATP N/A N/A N/A 30503210
    481557 6ig0:A (3.37) BS06 MG N/A N/A N/A 30503210
    481558 6ig0:A (3.37) BS07 MG N/A N/A N/A 30503210
    481559 6ig0:B (3.37) BS01 rna N/A N/A N/A 30503210
    481560 6ig0:B (3.37) BS02 rna N/A N/A N/A 30503210
    481561 6ig0:C (3.37) BS01 rna N/A N/A N/A 30503210
    481562 6ig0:D (3.37) BS01 rna N/A N/A N/A 30503210
    481563 6ig0:E (3.37) BS01 rna N/A N/A N/A 30503210
    481564 6ig0:E (3.37) BS02 rna N/A N/A N/A 30503210
    481565 6ig0:F (3.37) BS01 rna N/A N/A N/A 30503210
    481566 6ig0:F (3.37) BS02 rna N/A N/A N/A 30503210
    481567 6ig0:G (3.37) BS01 rna N/A N/A N/A 30503210
    481568 6ig0:G (3.37) BS02 rna N/A N/A N/A 30503210
    481569 6ig0:H (3.37) BS01 rna N/A N/A N/A 30503210
    481570 6ig0:H (3.37) BS02 rna N/A N/A N/A 30503210
    481571 6ig1:A (1.97) BS01 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    481572 6ig1:A (1.97) BS02 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    481573 6ig1:A (1.97) BS03 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    481574 6ig1:A (1.97) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    481575 6ig1:A (1.97) BS05 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    481576 6ig1:A (1.97) BS06 TTP 2.7.7.7 GO:0000287 ... Q47155 29850882
    481577 6ig1:F (1.97) BS01 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    481578 6ig1:F (1.97) BS02 dna 2.7.7.7 GO:0000287 ... Q47155 29850882
    481579 6ig1:F (1.97) BS03 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    481580 6ig1:F (1.97) BS04 MG 2.7.7.7 GO:0000287 ... Q47155 29850882
    481581 6ig1:F (1.97) BS05 TTP 2.7.7.7 GO:0000287 ... Q47155 29850882
    481582 6ig2:D (2.882) BS01 CTP 2.7.7.41 GO:0004605 ... O74339 31178220
    481583 6ig4:A (2.261) BS01 3G0 2.7.7.41 GO:0004605 ... O74339 31178220
    481584 6ig4:B (2.261) BS01 3G0 2.7.7.41 GO:0004605 ... O74339 31178220
    481585 6ig7:A (1.8) BS01 ZN 3.4.24.27 GO:0004222 ... P00800 30792457
    481586 6ig7:A (1.8) BS02 CA 3.4.24.27 GO:0004222 ... P00800 30792457
    481587 6ig7:A (1.8) BS03 CA 3.4.24.27 GO:0004222 ... P00800 30792457
    481588 6ig7:A (1.8) BS04 CA 3.4.24.27 GO:0004222 ... P00800 30792457
    481589 6ig7:A (1.8) BS05 CA 3.4.24.27 GO:0004222 ... P00800 30792457
    481590 6ig7:A (1.8) BS06 LEU 3.4.24.27 GO:0004222 ... P00800 30792457
    481591 6ig7:A (1.8) BS07 LYS 3.4.24.27 GO:0004222 ... P00800 30792457
    481592 6ig8:A (1.8) BS01 A7O 2.7.10.1 GO:0004672 ... P07333 30442420 BindingDB: IC50=14nM
    481593 6igj:A (1.501) BS01 MG ? GO:0005515 ... Q9SXZ2 31726375
    481594 6igk:A (2.0) BS01 peptide 3.2.1.17 GO:0003796 ... P24530 30413709
    481595 6igl:A (2.7) BS01 peptide 3.2.1.17 GO:0003796 ... P24530 30413709
    481596 6igs:A (2.16) BS01 ZN 2.4.2.8 GO:0000166 ... Q5NI77 N/A
    481597 6igs:A (2.16) BS02 ZN 2.4.2.8 GO:0000166 ... Q5NI77 N/A
    481598 6igs:B (2.16) BS01 ZN 2.4.2.8 GO:0000166 ... Q5NI77 N/A
    481599 6igs:B (2.16) BS02 ZN 2.4.2.8 GO:0000166 ... Q5NI77 N/A
    481600 6igs:C (2.16) BS01 ZN 2.4.2.8 GO:0000166 ... Q5NI77 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).