SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    483401 6ipu:A (1.99) BS01 dna ? GO:0000786 ... P68431 31848352
    483402 6ipu:A (1.99) BS02 dna ? GO:0000786 ... P68431 31848352
    483403 6ipu:B (1.99) BS01 dna ? GO:0003677 ... P62805 31848352
    483404 6ipu:B (1.99) BS02 dna ? GO:0003677 ... P62805 31848352
    483405 6ipu:C (1.99) BS01 dna ? GO:0000786 ... P04908 31848352
    483406 6ipu:C (1.99) BS02 dna ? GO:0000786 ... P04908 31848352
    483407 6ipu:D (1.99) BS01 dna ? GO:0000786 ... P06899 31848352
    483408 6ipu:D (1.99) BS02 dna ? GO:0000786 ... P06899 31848352
    483409 6ipu:E (1.99) BS01 dna ? GO:0000786 ... P68431 31848352
    483410 6ipu:E (1.99) BS02 dna ? GO:0000786 ... P68431 31848352
    483411 6ipu:F (1.99) BS01 dna ? GO:0003677 ... P62805 31848352
    483412 6ipu:F (1.99) BS02 dna ? GO:0003677 ... P62805 31848352
    483413 6ipu:G (1.99) BS01 dna ? GO:0000786 ... P04908 31848352
    483414 6ipu:G (1.99) BS02 dna ? GO:0000786 ... P04908 31848352
    483415 6ipu:H (1.99) BS01 dna ? GO:0000786 ... P06899 31848352
    483416 6ipu:H (1.99) BS02 dna ? GO:0000786 ... P06899 31848352
    483417 6ipw:A (2.1) BS01 AO6 ? N/A A0A5A4PV77 31350791
    483418 6ipw:B (2.1) BS01 AO6 ? N/A A0A5A4PV77 31350791
    483419 6ipw:C (2.1) BS01 AO6 ? N/A A0A5A4PV77 31350791
    483420 6ipw:D (2.1) BS01 AO6 ? N/A A0A5A4PV77 31350791
    483421 6ipz:Z (1.576) BS01 O4B 2.7.10.2 N/A P06241 33787846
    483422 6ipz:Z (1.576) BS02 O4B 2.7.10.2 N/A P06241 33787846
    483423 6iq1:A (2.485) BS01 ZN 3.-.-.- GO:0000166 ... Q59WG0 30622225
    483424 6iq1:B (2.485) BS01 ZN 3.-.-.- GO:0000166 ... Q59WG0 30622225
    483425 6iq1:C (2.485) BS01 ZN 3.-.-.- GO:0000166 ... Q59WG0 30622225
    483426 6iq1:D (2.485) BS01 ZN 3.-.-.- GO:0000166 ... Q59WG0 30622225
    483427 6iq4:A (2.25) BS01 dna ? GO:0000786 ... P68431 31478581
    483428 6iq4:A (2.25) BS02 dna ? GO:0000786 ... P68431 31478581
    483429 6iq4:B (2.25) BS01 dna ? GO:0003677 ... P62805 31478581
    483430 6iq4:B (2.25) BS02 dna ? GO:0003677 ... P62805 31478581
    483431 6iq4:C (2.25) BS01 dna ? GO:0000786 ... P04908 31478581
    483432 6iq4:C (2.25) BS02 dna ? GO:0000786 ... P04908 31478581
    483433 6iq4:D (2.25) BS01 dna ? GO:0000786 ... P06899 31478581
    483434 6iq4:D (2.25) BS02 dna ? GO:0000786 ... P06899 31478581
    483435 6iq4:E (2.25) BS01 dna ? GO:0000786 ... P68431 31478581
    483436 6iq4:E (2.25) BS02 dna ? GO:0000786 ... P68431 31478581
    483437 6iq4:E (2.25) BS03 XIS ? GO:0000786 ... P68431 31478581
    483438 6iq4:F (2.25) BS01 dna ? GO:0003677 ... P62805 31478581
    483439 6iq4:F (2.25) BS02 dna ? GO:0003677 ... P62805 31478581
    483440 6iq4:G (2.25) BS01 dna ? GO:0000786 ... P04908 31478581
    483441 6iq4:G (2.25) BS02 dna ? GO:0000786 ... P04908 31478581
    483442 6iq4:G (2.25) BS03 D0X ? GO:0000786 ... P04908 31478581
    483443 6iq4:H (2.25) BS01 dna ? GO:0000786 ... P06899 31478581
    483444 6iq4:H (2.25) BS02 dna ? GO:0000786 ... P06899 31478581
    483445 6iq5:A (3.7) BS01 HEM 1.14.14.1
    4.2.1.152
    GO:0004497 ... Q16678 30553624
    483446 6iq5:A (3.7) BS02 AQ0 1.14.14.1
    4.2.1.152
    GO:0004497 ... Q16678 30553624 BindingDB: IC50=4.4nM
    483447 6iq5:B (3.7) BS01 HEM 1.14.14.1
    4.2.1.152
    GO:0004497 ... Q16678 30553624
    483448 6iq6:A (2.29) BS01 AW9 1.2.1.12
    2.6.99.-
    GO:0000226 ... P04406 31387164
    483449 6iq6:B (2.29) BS01 AW9 1.2.1.12
    2.6.99.-
    GO:0000226 ... P04406 31387164
    483450 6iq6:C (2.29) BS01 AW9 1.2.1.12
    2.6.99.-
    GO:0000226 ... P04406 31387164
    483451 6iq6:D (2.29) BS01 AW9 1.2.1.12
    2.6.99.-
    GO:0000226 ... P04406 31387164
    483452 6iq6:E (2.29) BS01 AW9 1.2.1.12
    2.6.99.-
    GO:0000226 ... P04406 31387164
    483453 6iqd:A (2.84) BS01 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    483454 6iqd:A (2.84) BS02 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    483455 6iqd:B (2.84) BS01 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    483456 6iqd:B (2.84) BS02 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    483457 6iqd:C (2.84) BS01 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    483458 6iqd:C (2.84) BS02 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    483459 6iqd:D (2.84) BS01 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    483460 6iqd:D (2.84) BS02 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    483461 6iqd:E (2.84) BS01 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    483462 6iqd:E (2.84) BS02 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    483463 6iqd:F (2.84) BS01 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    483464 6iqd:F (2.84) BS02 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    483465 6iqd:G (2.84) BS01 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    483466 6iqd:G (2.84) BS02 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    483467 6iqd:H (2.84) BS01 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    483468 6iqd:H (2.84) BS02 ZN 1.1.1.1 GO:0004022 ... P42327 31006524
    483469 6iqg:A (2.998) BS01 peptide ? N/A P0DOX5 30606013
    483470 6iqg:A (2.998) BS02 BMA ? N/A P0DOX5 30606013
    483471 6iqg:B (2.998) BS01 peptide ? N/A P0DOX5 30606013
    483472 6iqh:A (2.999) BS01 peptide ? N/A P0DOX5 30606013
    483473 6iqh:A (2.999) BS02 GUA ? N/A P0DOX5 30606013
    483474 6iqh:B (2.999) BS01 peptide ? N/A P0DOX5 30606013
    483475 6iqh:B (2.999) BS02 GUA ? N/A P0DOX5 30606013
    483476 6iqj:A (1.922) BS01 peptide ? GO:0003779 ... Q42418 31653702
    483477 6iqj:B (1.922) BS01 peptide ? GO:0003779 ... Q42418 31653702
    483478 6iqj:B (1.922) BS02 peptide ? GO:0003779 ... Q42418 31653702
    483479 6iql:A (3.5) BS01 L74 ? GO:0004930 ... P0ABE7
    P51436
    31750832
    483480 6iql:B (3.5) BS01 L74 ? GO:0004930 ... P0ABE7
    P51436
    31750832
    483481 6iqm:A (1.85) BS01 NAD 1.2.1.12 GO:0006006 ... N/A N/A
    483482 6iqm:B (1.85) BS01 NAD 1.2.1.12 GO:0006006 ... N/A N/A
    483483 6iqm:C (1.85) BS01 NAD 1.2.1.12 GO:0006006 ... N/A N/A
    483484 6iqm:D (1.85) BS01 NAD 1.2.1.12 GO:0006006 ... N/A N/A
    483485 6iqn:A (2.54) BS01 AQ6 2.7.10.1 GO:0004672 ... P04629 31699609 BindingDB: IC50=199nM
    483486 6iqn:A (2.54) BS02 AQ6 2.7.10.1 GO:0004672 ... P04629 31699609 BindingDB: IC50=199nM
    483487 6iqn:B (2.54) BS01 AQ6 2.7.10.1 GO:0004672 ... P04629 31699609 BindingDB: IC50=199nM
    483488 6iqn:B (2.54) BS02 AQ6 2.7.10.1 GO:0004672 ... P04629 31699609 BindingDB: IC50=199nM
    483489 6iqq:C (2.8) BS01 CA 3.4.21.102 GO:0006508 ... P23865 31387902
    483490 6iqq:D (2.8) BS01 CA 3.4.21.102 GO:0006508 ... P23865 31387902
    483491 6iqw:A (3.35) BS01 ATP 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 30459428
    483492 6iqw:C (3.35) BS01 rna ? GO:0003723 ... B6YWC0 30459428
    483493 6iqw:D (3.35) BS01 rna ? GO:0003723 ... B6YWC0 30459428
    483494 6iqw:E (3.35) BS01 rna ? GO:0003723 ... B6YWC1 30459428
    483495 6iqw:F (3.35) BS01 rna ? GO:0003723 ... B6YWC2 30459428
    483496 6iqx:A (1.432) BS01 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    483497 6iqx:A (1.432) BS02 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    483498 6iqx:A (1.432) BS03 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    483499 6iqx:A (1.432) BS04 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    483500 6iqx:B (1.432) BS01 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    483501 6iqx:B (1.432) BS02 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    483502 6iqx:B (1.432) BS03 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    483503 6iqx:B (1.432) BS04 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    483504 6iqy:A (1.6) BS01 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    483505 6iqy:A (1.6) BS02 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    483506 6iqy:A (1.6) BS03 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    483507 6iqy:A (1.6) BS04 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    483508 6iqy:B (1.6) BS01 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    483509 6iqy:B (1.6) BS02 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    483510 6iqy:B (1.6) BS03 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    483511 6iqy:B (1.6) BS04 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    483512 6iqz:A (1.46) BS01 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    483513 6iqz:A (1.46) BS02 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    483514 6iqz:A (1.46) BS03 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    483515 6iqz:A (1.46) BS04 CU 1.3.3.5 GO:0005507 ... Q12737 30156345
    483516 6ir0:A (-1.00) BS01 ZN 2.3.2.27 GO:0007219 ... Q86UW9 30927328
    483517 6ir0:A (-1.00) BS02 ZN 2.3.2.27 GO:0007219 ... Q86UW9 30927328
    483518 6ir7:A (1.277) BS01 LDO ? GO:0006091 ... P42212 30886277
    483519 6ir8:A (2.3) BS01 dna ? GO:0003700 ... B9FNW2 30783673
    483520 6ir8:A (2.3) BS02 dna ? GO:0003700 ... B9FNW2 30783673
    483521 6ir9:A (3.8) BS01 rna 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    483522 6ir9:A (3.8) BS02 dna 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    483523 6ir9:A (3.8) BS03 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    483524 6ir9:A (3.8) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    483525 6ir9:A (3.8) BS05 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    483526 6ir9:B (3.8) BS01 rna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    483527 6ir9:B (3.8) BS02 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    483528 6ir9:B (3.8) BS03 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    483529 6ir9:B (3.8) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    483530 6ir9:I (3.8) BS01 ZN ? GO:0000428 ... F2QPE6 30733384
    483531 6ir9:I (3.8) BS02 ZN ? GO:0000428 ... F2QPE6 30733384
    483532 6ir9:J (3.8) BS01 ZN ? GO:0000428 ... C4R009 30733384
    483533 6ir9:L (3.8) BS01 ZN ? GO:0001054 ... F2QMI1 30733384
    483534 6ir9:M (3.8) BS01 ZN ? GO:0000993 ... C4QZ45 30733384
    483535 6ir9:V (3.8) BS01 ZN ? GO:0000775 ... C4R0E6 30733384
    483536 6ir9:W (3.8) BS01 dna ? GO:0003711 ... C4R370 30733384
    483537 6ir9:W (3.8) BS02 dna ? GO:0003711 ... C4R370 30733384
    483538 6ir9:a (3.8) BS01 dna ? GO:0000775 ... P84243 30733384
    483539 6ir9:a (3.8) BS02 dna ? GO:0000775 ... P84243 30733384
    483540 6ir9:b (3.8) BS01 dna ? GO:0000781 ... P62805 30733384
    483541 6ir9:b (3.8) BS02 dna ? GO:0000781 ... P62805 30733384
    483542 6ir9:c (3.8) BS01 dna ? GO:0000786 ... P04908 30733384
    483543 6ir9:c (3.8) BS02 dna ? GO:0000786 ... P04908 30733384
    483544 6ir9:d (3.8) BS01 dna ? GO:0000786 ... P06899 30733384
    483545 6ir9:d (3.8) BS02 dna ? GO:0000786 ... P06899 30733384
    483546 6ir9:e (3.8) BS01 dna ? GO:0000775 ... P84243 30733384
    483547 6ir9:e (3.8) BS02 dna ? GO:0000775 ... P84243 30733384
    483548 6ir9:f (3.8) BS01 dna ? GO:0000781 ... P62805 30733384
    483549 6iri:A (1.38) BS01 FES ? GO:0009055 ... Q8DJI7 31520614
    483550 6irk:A (1.75) BS01 MG 5.3.1.5 GO:0000287 ... P24300 31061502
    483551 6irk:A (1.75) BS02 MG 5.3.1.5 GO:0000287 ... P24300 31061502
    483552 6irl:A (2.1) BS01 peptide ? N/A Q9GIP6 32152225
    483553 6iro:A (3.4) BS01 dna ? GO:0000786 ... P84233 30872815
    483554 6iro:A (3.4) BS02 dna ? GO:0000786 ... P84233 30872815
    483555 6iro:B (3.4) BS01 dna ? GO:0000786 ... P62799 30872815
    483556 6iro:B (3.4) BS02 dna ? GO:0000786 ... P62799 30872815
    483557 6iro:C (3.4) BS01 dna ? GO:0000786 ... P06897 30872815
    483558 6iro:C (3.4) BS02 dna ? GO:0000786 ... P06897 30872815
    483559 6iro:D (3.4) BS01 dna ? GO:0000786 ... P02281 30872815
    483560 6iro:D (3.4) BS02 dna ? GO:0000786 ... P02281 30872815
    483561 6iro:E (3.4) BS01 dna ? GO:0000786 ... P84233 30872815
    483562 6iro:E (3.4) BS02 dna ? GO:0000786 ... P84233 30872815
    483563 6iro:F (3.4) BS01 dna ? GO:0000786 ... P62799 30872815
    483564 6iro:F (3.4) BS02 dna ? GO:0000786 ... P62799 30872815
    483565 6iro:G (3.4) BS01 dna ? GO:0000786 ... P06897 30872815
    483566 6iro:G (3.4) BS02 dna ? GO:0000786 ... P06897 30872815
    483567 6iro:H (3.4) BS01 dna ? GO:0000786 ... P02281 30872815
    483568 6iro:H (3.4) BS02 dna ? GO:0000786 ... P02281 30872815
    483569 6iro:L (3.4) BS01 dna 3.6.4.- GO:0000182 ... P38144 30872815
    483570 6iro:L (3.4) BS02 dna 3.6.4.- GO:0000182 ... P38144 30872815
    483571 6iro:L (3.4) BS03 ADP 3.6.4.- GO:0000182 ... P38144 30872815
    483572 6irq:A (1.91) BS01 dna ? GO:0003697 ... P40947 N/A
    483573 6irq:A (1.91) BS02 dna ? GO:0003697 ... P40947 N/A
    483574 6irq:B (1.91) BS01 dna ? GO:0003697 ... P40947 N/A
    483575 6irq:B (1.91) BS02 dna ? GO:0003697 ... P40947 N/A
    483576 6irq:C (1.91) BS01 dna ? GO:0003697 ... P40947 N/A
    483577 6irq:C (1.91) BS02 dna ? GO:0003697 ... P40947 N/A
    483578 6irq:D (1.91) BS01 dna ? GO:0003697 ... P40947 N/A
    483579 6irq:D (1.91) BS02 dna ? GO:0003697 ... P40947 N/A
    483580 6irt:B (3.5) BS01 AUU ? GO:0002720 ... Q01650 30867591 BindingDB: IC50=112000nM
    483581 6irw:A (2.9) BS01 SAH 2.1.1.62 GO:0016422 ... Q9H4Z3 30467178
    483582 6irw:B (2.9) BS01 SAH 2.1.1.62 GO:0016422 ... Q9H4Z3 30467178
    483583 6iry:A (1.8) BS01 SAH 2.1.1.62 GO:0016422 ... A0A0R4IKJ1 30467178
    483584 6irz:A (2.0) BS01 SAH 2.1.1.62 GO:0016422 ... A0A0R4IKJ1 30467178
    483585 6irz:A (2.0) BS02 M7G 2.1.1.62 GO:0016422 ... A0A0R4IKJ1 30467178
    483586 6is0:A (1.8) BS01 rna 2.1.1.62 GO:0016422 ... A0A0R4IKJ1 30467178
    483587 6is0:A (1.8) BS02 SAH 2.1.1.62 GO:0016422 ... A0A0R4IKJ1 30467178
    483588 6is0:A (1.8) BS03 M7G 2.1.1.62 GO:0016422 ... A0A0R4IKJ1 30467178
    483589 6is1:A (1.59) BS01 BEF ? GO:0000160 ... Q2YY03 31598698
    483590 6is1:A (1.59) BS02 MG ? GO:0000160 ... Q2YY03 31598698
    483591 6is1:B (1.59) BS01 BEF ? GO:0000160 ... Q2YY03 31598698
    483592 6is1:B (1.59) BS02 MG ? GO:0000160 ... Q2YY03 31598698
    483593 6is1:C (1.59) BS01 BEF ? GO:0000160 ... Q2YY03 31598698
    483594 6is1:C (1.59) BS02 MG ? GO:0000160 ... Q2YY03 31598698
    483595 6is1:D (1.59) BS01 BEF ? GO:0000160 ... Q2YY03 31598698
    483596 6is1:D (1.59) BS02 MG ? GO:0000160 ... Q2YY03 31598698
    483597 6is1:E (1.59) BS01 BEF ? GO:0000160 ... Q2YY03 31598698
    483598 6is1:E (1.59) BS02 MG ? GO:0000160 ... Q2YY03 31598698
    483599 6is1:F (1.59) BS01 BEF ? GO:0000160 ... Q2YY03 31598698
    483600 6is1:F (1.59) BS02 MG ? GO:0000160 ... Q2YY03 31598698

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).