SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    485601 6j40:Y (3.8) BS01 CLA N/A GO:0009523 ... N/A 31358960
    485602 6j40:Z (3.8) BS01 CLA N/A GO:0009523 ... N/A 31358960
    485603 6j40:Z (3.8) BS02 CLA N/A GO:0009523 ... N/A 31358960
    485604 6j40:a (3.8) BS01 peptide N/A GO:0009055 ... N/A 31358960
    485605 6j40:a (3.8) BS02 FE2 N/A GO:0009055 ... N/A 31358960
    485606 6j40:a (3.8) BS03 CLA N/A GO:0009055 ... N/A 31358960
    485607 6j40:a (3.8) BS04 CLA N/A GO:0009055 ... N/A 31358960
    485608 6j40:a (3.8) BS05 BCT N/A GO:0009055 ... N/A 31358960
    485609 6j40:a (3.8) BS06 OEX N/A GO:0009055 ... N/A 31358960
    485610 6j40:a (3.8) BS07 CLA N/A GO:0009055 ... N/A 31358960
    485611 6j40:a (3.8) BS08 CLA N/A GO:0009055 ... N/A 31358960
    485612 6j40:a (3.8) BS09 PHO N/A GO:0009055 ... N/A 31358960
    485613 6j40:a (3.8) BS10 PHO N/A GO:0009055 ... N/A 31358960
    485614 6j40:b (3.8) BS01 CLA N/A GO:0009521 ... N/A 31358960
    485615 6j40:b (3.8) BS02 CLA N/A GO:0009521 ... N/A 31358960
    485616 6j40:b (3.8) BS03 CLA N/A GO:0009521 ... N/A 31358960
    485617 6j40:b (3.8) BS04 CLA N/A GO:0009521 ... N/A 31358960
    485618 6j40:b (3.8) BS05 CLA N/A GO:0009521 ... N/A 31358960
    485619 6j40:b (3.8) BS06 CLA N/A GO:0009521 ... N/A 31358960
    485620 6j40:b (3.8) BS07 CLA N/A GO:0009521 ... N/A 31358960
    485621 6j40:b (3.8) BS08 CLA N/A GO:0009521 ... N/A 31358960
    485622 6j40:b (3.8) BS09 CLA N/A GO:0009521 ... N/A 31358960
    485623 6j40:b (3.8) BS10 CLA N/A GO:0009521 ... N/A 31358960
    485624 6j40:b (3.8) BS11 CLA N/A GO:0009521 ... N/A 31358960
    485625 6j40:b (3.8) BS12 CLA N/A GO:0009521 ... N/A 31358960
    485626 6j40:b (3.8) BS13 CLA N/A GO:0009521 ... N/A 31358960
    485627 6j40:b (3.8) BS14 CLA N/A GO:0009521 ... N/A 31358960
    485628 6j40:b (3.8) BS15 CLA N/A GO:0009521 ... N/A 31358960
    485629 6j40:b (3.8) BS16 CLA N/A GO:0009521 ... N/A 31358960
    485630 6j40:c (3.8) BS01 OEX N/A GO:0009521 ... N/A 31358960
    485631 6j40:c (3.8) BS02 CLA N/A GO:0009521 ... N/A 31358960
    485632 6j40:c (3.8) BS03 CLA N/A GO:0009521 ... N/A 31358960
    485633 6j40:c (3.8) BS04 CLA N/A GO:0009521 ... N/A 31358960
    485634 6j40:c (3.8) BS05 CLA N/A GO:0009521 ... N/A 31358960
    485635 6j40:c (3.8) BS06 CLA N/A GO:0009521 ... N/A 31358960
    485636 6j40:c (3.8) BS07 CLA N/A GO:0009521 ... N/A 31358960
    485637 6j40:c (3.8) BS08 CLA N/A GO:0009521 ... N/A 31358960
    485638 6j40:c (3.8) BS09 CLA N/A GO:0009521 ... N/A 31358960
    485639 6j40:c (3.8) BS10 CLA N/A GO:0009521 ... N/A 31358960
    485640 6j40:c (3.8) BS11 CLA N/A GO:0009521 ... N/A 31358960
    485641 6j40:c (3.8) BS12 CLA N/A GO:0009521 ... N/A 31358960
    485642 6j40:c (3.8) BS13 CLA N/A GO:0009521 ... N/A 31358960
    485643 6j40:c (3.8) BS14 CLA N/A GO:0009521 ... N/A 31358960
    485644 6j40:c (3.8) BS15 CLA N/A GO:0009521 ... N/A 31358960
    485645 6j40:c (3.8) BS16 CLA N/A GO:0009521 ... N/A 31358960
    485646 6j40:d (3.8) BS01 peptide N/A GO:0009523 ... N/A 31358960
    485647 6j40:d (3.8) BS02 FE2 N/A GO:0009523 ... N/A 31358960
    485648 6j40:d (3.8) BS03 BCT N/A GO:0009523 ... N/A 31358960
    485649 6j40:d (3.8) BS04 CLA N/A GO:0009523 ... N/A 31358960
    485650 6j40:d (3.8) BS05 CLA N/A GO:0009523 ... N/A 31358960
    485651 6j40:d (3.8) BS06 CLA N/A GO:0009523 ... N/A 31358960
    485652 6j40:d (3.8) BS07 PHO N/A GO:0009523 ... N/A 31358960
    485653 6j40:d (3.8) BS08 PHO N/A GO:0009523 ... N/A 31358960
    485654 6j40:d (3.8) BS09 CLA N/A GO:0009523 ... N/A 31358960
    485655 6j40:d (3.8) BS10 CLA N/A GO:0009523 ... N/A 31358960
    485656 6j40:e (3.8) BS01 peptide N/A GO:0009523 ... N/A 31358960
    485657 6j40:e (3.8) BS02 HEM N/A GO:0009523 ... N/A 31358960
    485658 6j40:h (3.8) BS01 CLA ? GO:0009507 ... B7XBY7 31358960
    485659 6j40:h (3.8) BS02 CLA ? GO:0009507 ... B7XBY7 31358960
    485660 6j40:i (3.8) BS01 CLA N/A GO:0009523 ... N/A 31358960
    485661 6j40:i (3.8) BS02 CLA N/A GO:0009523 ... N/A 31358960
    485662 6j40:j (3.8) BS01 peptide N/A GO:0009523 ... N/A 31358960
    485663 6j40:k (3.8) BS01 CLA N/A GO:0009523 ... N/A 31358960
    485664 6j40:k (3.8) BS02 CLA N/A GO:0009523 ... N/A 31358960
    485665 6j40:v (3.8) BS01 HEM ? GO:0005506 ... B6ZHF4 31358960
    485666 6j40:w (3.8) BS01 CLA N/A N/A N/A 31358960
    485667 6j40:w (3.8) BS02 CLA N/A N/A N/A 31358960
    485668 6j40:y (3.8) BS01 peptide N/A GO:0009523 ... N/A 31358960
    485669 6j40:z (3.8) BS01 CLA N/A GO:0009523 ... N/A 31358960
    485670 6j40:z (3.8) BS02 CLA N/A GO:0009523 ... N/A 31358960
    485671 6j40:z (3.8) BS03 CLA N/A GO:0009523 ... N/A 31358960
    485672 6j42:A (2.492) BS01 MN ? GO:0046872 ... Q8YSJ5 30993731
    485673 6j42:A (2.492) BS02 MN ? GO:0046872 ... Q8YSJ5 30993731
    485674 6j42:A (2.492) BS03 CA ? GO:0046872 ... Q8YSJ5 30993731
    485675 6j42:B (2.492) BS01 MN ? GO:0046872 ... Q8YSJ5 30993731
    485676 6j42:B (2.492) BS02 MN ? GO:0046872 ... Q8YSJ5 30993731
    485677 6j42:B (2.492) BS03 CA ? GO:0046872 ... Q8YSJ5 30993731
    485678 6j42:B (2.492) BS04 CA ? GO:0046872 ... Q8YSJ5 30993731
    485679 6j42:C (2.492) BS01 CA ? GO:0046872 ... Q8YSJ5 30993731
    485680 6j42:C (2.492) BS02 MN ? GO:0046872 ... Q8YSJ5 30993731
    485681 6j42:C (2.492) BS03 MN ? GO:0046872 ... Q8YSJ5 30993731
    485682 6j42:C (2.492) BS04 CA ? GO:0046872 ... Q8YSJ5 30993731
    485683 6j43:A (1.85) BS01 CA 3.4.21.64 GO:0004252 ... P06873 32280322
    485684 6j43:A (1.85) BS02 CA 3.4.21.64 GO:0004252 ... P06873 32280322
    485685 6j44:A (2.06) BS01 ZN ? GO:0003684 ... P23025 31092331
    485686 6j46:A (2.621) BS01 SAH 2.1.1.- GO:0008168 ... B8NJH3 31149354
    485687 6j46:B (2.621) BS01 SAH 2.1.1.- GO:0008168 ... B8NJH3 31149354
    485688 6j4b:A (1.58) BS01 ZN ? GO:0046872 ... X2D812 31681917
    485689 6j4c:A (1.58) BS01 ZN ? GO:0046872 ... X2D812 31681917
    485690 6j4e:B (3.126) BS01 dna ? GO:0003700 ... Q9SI37 N/A
    485691 6j4e:B (3.126) BS02 dna ? GO:0003700 ... Q9SI37 N/A
    485692 6j4e:B (3.126) BS03 ZN ? GO:0003700 ... Q9SI37 N/A
    485693 6j4f:B (2.4) BS01 dna ? GO:0003700 ... Q9FG77 N/A
    485694 6j4f:B (2.4) BS02 dna ? GO:0003700 ... Q9FG77 N/A
    485695 6j4f:B (2.4) BS03 ZN ? GO:0003700 ... Q9FG77 N/A
    485696 6j4f:F (2.4) BS01 dna ? GO:0003700 ... Q9FG77 N/A
    485697 6j4f:F (2.4) BS02 dna ? GO:0003700 ... Q9FG77 N/A
    485698 6j4f:F (2.4) BS03 ZN ? GO:0003700 ... Q9FG77 N/A
    485699 6j4g:B (3.0) BS01 dna ? GO:0003700 ... Q8S8P5 N/A
    485700 6j4g:B (3.0) BS02 dna ? GO:0003700 ... Q8S8P5 N/A
    485701 6j4g:B (3.0) BS03 ZN ? GO:0003700 ... Q8S8P5 N/A
    485702 6j4h:A (1.641) BS01 GLC 3.2.1.41 GO:0004553 ... N/A 31478902
    485703 6j4h:A (1.641) BS02 GLC 3.2.1.41 GO:0004553 ... N/A 31478902
    485704 6j4h:A (1.641) BS03 GLC 3.2.1.41 GO:0004553 ... N/A 31478902
    485705 6j4h:A (1.641) BS04 GLC 3.2.1.41 GO:0004553 ... N/A 31478902
    485706 6j4h:A (1.641) BS05 GLC 3.2.1.41 GO:0004553 ... N/A 31478902
    485707 6j4h:A (1.641) BS06 CA 3.2.1.41 GO:0004553 ... N/A 31478902
    485708 6j4h:A (1.641) BS07 MG 3.2.1.41 GO:0004553 ... N/A 31478902
    485709 6j4h:A (1.641) BS08 MG 3.2.1.41 GO:0004553 ... N/A 31478902
    485710 6j4j:A (2.101) BS01 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    485711 6j4j:A (2.101) BS02 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    485712 6j4j:B (2.101) BS01 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    485713 6j4j:B (2.101) BS02 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    485714 6j4j:C (2.101) BS01 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    485715 6j4j:D (2.101) BS01 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    485716 6j4j:E (2.101) BS01 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    485717 6j4j:H (2.101) BS01 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    485718 6j4m:A (2.598) BS01 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    485719 6j4m:A (2.598) BS02 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    485720 6j4m:A (2.598) BS03 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    485721 6j4m:H (2.598) BS01 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    485722 6j4m:H (2.598) BS02 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    485723 6j4m:H (2.598) BS03 MG 1.16.3.1 GO:0006826 ... Q94IC4 N/A
    485724 6j4n:A (2.1) BS01 ZN N/A N/A N/A 30279316
    485725 6j4n:A (2.1) BS02 ZN N/A N/A N/A 30279316
    485726 6j4n:B (2.1) BS01 ZN N/A N/A N/A 30279316
    485727 6j4n:B (2.1) BS02 ZN N/A N/A N/A 30279316
    485728 6j4n:C (2.1) BS01 ZN N/A N/A N/A 30279316
    485729 6j4n:C (2.1) BS02 ZN N/A N/A N/A 30279316
    485730 6j4n:D (2.1) BS01 ZN N/A N/A N/A 30279316
    485731 6j4n:D (2.1) BS02 ZN N/A N/A N/A 30279316
    485732 6j4n:E (2.1) BS01 ZN N/A N/A N/A 30279316
    485733 6j4n:E (2.1) BS02 ZN N/A N/A N/A 30279316
    485734 6j4n:F (2.1) BS01 ZN N/A N/A N/A 30279316
    485735 6j4n:F (2.1) BS02 ZN N/A N/A N/A 30279316
    485736 6j4n:G (2.1) BS01 ZN N/A N/A N/A 30279316
    485737 6j4n:G (2.1) BS02 ZN N/A N/A N/A 30279316
    485738 6j4n:H (2.1) BS01 ZN N/A N/A N/A 30279316
    485739 6j4n:H (2.1) BS02 ZN N/A N/A N/A 30279316
    485740 6j4p:A (1.599) BS01 BJL 3.4.17.17 GO:0005737 ... Q86V25 31235911
    485741 6j4q:A (2.7) BS01 TQ8 3.4.17.17 GO:0005737 ... Q86V25 31235911
    485742 6j4q:A (2.7) BS02 TQ8 3.4.17.17 GO:0005737 ... Q86V25 31235911
    485743 6j4q:C (2.7) BS01 TQ8 3.4.17.17 GO:0005737 ... Q86V25 31235911
    485744 6j4q:F (2.7) BS01 TQ8 3.4.17.17 GO:0005737 ... Q86V25 31235911
    485745 6j4q:F (2.7) BS02 TQ8 3.4.17.17 GO:0005737 ... Q86V25 31235911
    485746 6j4q:J (2.7) BS01 peptide 3.4.17.17 GO:0005737 ... Q86V25 31235911
    485747 6j4q:J (2.7) BS02 TQ8 3.4.17.17 GO:0005737 ... Q86V25 31235911
    485748 6j4r:A (2.8) BS01 dna ? GO:0003677 ... Q94CL7 30974511
    485749 6j4r:A (2.8) BS02 dna ? GO:0003677 ... Q94CL7 30974511
    485750 6j4r:B (2.8) BS01 dna ? GO:0003677 ... Q94CL7 30974511
    485751 6j4r:B (2.8) BS02 dna ? GO:0003677 ... Q94CL7 30974511
    485752 6j4r:C (2.8) BS01 dna ? GO:0003677 ... Q94CL7 30974511
    485753 6j4r:C (2.8) BS02 dna ? GO:0003677 ... Q94CL7 30974511
    485754 6j4r:D (2.8) BS01 dna ? GO:0003677 ... Q94CL7 30974511
    485755 6j4r:D (2.8) BS02 dna ? GO:0003677 ... Q94CL7 30974511
    485756 6j4t:A (1.82) BS01 IMP 3.5.4.- GO:0005737 ... Q8LPL7 31318636
    485757 6j4t:A (1.82) BS02 ZN 3.5.4.- GO:0005737 ... Q8LPL7 31318636
    485758 6j4u:A (1.998) BS01 peptide 3.4.17.17 GO:0005737 ... Q7L8A9 31235911
    485759 6j4v:A (2.1) BS01 peptide 3.4.17.17 GO:0005737 ... Q86V25 31235911
    485760 6j4w:A (7.9) BS01 rna 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485761 6j4w:A (7.9) BS02 dna 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485762 6j4w:A (7.9) BS03 dna 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485763 6j4w:A (7.9) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485764 6j4w:A (7.9) BS05 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485765 6j4w:A (7.9) BS06 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485766 6j4w:B (7.9) BS01 rna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    485767 6j4w:B (7.9) BS02 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    485768 6j4w:B (7.9) BS03 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    485769 6j4w:B (7.9) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    485770 6j4w:E (7.9) BS01 dna ? GO:0001054 ... C4R3P8 30733384
    485771 6j4w:I (7.9) BS01 ZN ? GO:0000428 ... F2QPE6 30733384
    485772 6j4w:I (7.9) BS02 ZN ? GO:0000428 ... F2QPE6 30733384
    485773 6j4w:J (7.9) BS01 ZN ? GO:0000428 ... F2QTN1 30733384
    485774 6j4w:L (7.9) BS01 ZN ? GO:0001054 ... F2QMI1 30733384
    485775 6j4w:M (7.9) BS01 ZN ? GO:0000993 ... C4QZ45 30733384
    485776 6j4w:V (7.9) BS01 ZN ? GO:0000775 ... C4R0E6 30733384
    485777 6j4w:W (7.9) BS01 dna ? GO:0003711 ... C4R370 30733384
    485778 6j4w:W (7.9) BS02 dna ? GO:0003711 ... C4R370 30733384
    485779 6j4w:a (7.9) BS01 dna ? GO:0000775 ... P84243 30733384
    485780 6j4w:a (7.9) BS02 dna ? GO:0000775 ... P84243 30733384
    485781 6j4w:b (7.9) BS01 dna ? GO:0000781 ... P62805 30733384
    485782 6j4w:b (7.9) BS02 dna ? GO:0000781 ... P62805 30733384
    485783 6j4w:c (7.9) BS01 dna ? GO:0000786 ... P04908 30733384
    485784 6j4w:c (7.9) BS02 dna ? GO:0000786 ... P04908 30733384
    485785 6j4w:d (7.9) BS01 dna ? GO:0000786 ... P06899 30733384
    485786 6j4w:e (7.9) BS01 dna ? GO:0000775 ... P84243 30733384
    485787 6j4w:e (7.9) BS02 dna ? GO:0000775 ... P84243 30733384
    485788 6j4w:f (7.9) BS01 dna ? GO:0000781 ... P62805 30733384
    485789 6j4w:f (7.9) BS02 dna ? GO:0000781 ... P62805 30733384
    485790 6j4w:g (7.9) BS01 dna ? GO:0000786 ... P04908 30733384
    485791 6j4w:g (7.9) BS02 dna ? GO:0000786 ... P04908 30733384
    485792 6j4w:h (7.9) BS01 dna ? GO:0000786 ... P06899 30733384
    485793 6j4w:h (7.9) BS02 dna ? GO:0000786 ... P06899 30733384
    485794 6j4x:A (4.3) BS01 rna 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485795 6j4x:A (4.3) BS02 dna 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485796 6j4x:A (4.3) BS03 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485797 6j4x:A (4.3) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485798 6j4x:A (4.3) BS05 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485799 6j4x:B (4.3) BS01 rna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    485800 6j4x:B (4.3) BS02 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).