SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    485801 6j4x:B (4.3) BS03 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    485802 6j4x:B (4.3) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    485803 6j4x:E (4.3) BS01 dna ? GO:0001054 ... C4R3P8 30733384
    485804 6j4x:I (4.3) BS01 ZN ? GO:0000428 ... F2QPE6 30733384
    485805 6j4x:I (4.3) BS02 ZN ? GO:0000428 ... F2QPE6 30733384
    485806 6j4x:J (4.3) BS01 ZN ? GO:0000428 ... C4R009 30733384
    485807 6j4x:L (4.3) BS01 ZN ? GO:0001054 ... F2QMI1 30733384
    485808 6j4x:M (4.3) BS01 ZN ? GO:0000993 ... C4QZ45 30733384
    485809 6j4x:V (4.3) BS01 ZN ? GO:0000775 ... C4R0E6 30733384
    485810 6j4x:W (4.3) BS01 dna ? GO:0003711 ... C4R370 30733384
    485811 6j4x:W (4.3) BS02 dna ? GO:0003711 ... C4R370 30733384
    485812 6j4x:a (4.3) BS01 dna ? GO:0000775 ... P84243 30733384
    485813 6j4x:a (4.3) BS02 dna ? GO:0000775 ... P84243 30733384
    485814 6j4x:b (4.3) BS01 dna ? GO:0000781 ... P62805 30733384
    485815 6j4x:b (4.3) BS02 dna ? GO:0000781 ... P62805 30733384
    485816 6j4x:c (4.3) BS01 dna ? GO:0000786 ... P04908 30733384
    485817 6j4x:c (4.3) BS02 dna ? GO:0000786 ... P04908 30733384
    485818 6j4x:d (4.3) BS01 dna ? GO:0000786 ... P06899 30733384
    485819 6j4x:d (4.3) BS02 dna ? GO:0000786 ... P06899 30733384
    485820 6j4x:e (4.3) BS01 dna ? GO:0000775 ... P84243 30733384
    485821 6j4x:e (4.3) BS02 dna ? GO:0000775 ... P84243 30733384
    485822 6j4x:f (4.3) BS01 dna ? GO:0000781 ... P62805 30733384
    485823 6j4y:A (4.3) BS01 rna 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485824 6j4y:A (4.3) BS02 dna 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485825 6j4y:A (4.3) BS03 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485826 6j4y:A (4.3) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485827 6j4y:A (4.3) BS05 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485828 6j4y:B (4.3) BS01 rna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    485829 6j4y:B (4.3) BS02 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    485830 6j4y:B (4.3) BS03 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    485831 6j4y:B (4.3) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    485832 6j4y:E (4.3) BS01 dna ? GO:0001054 ... C4R3P8 30733384
    485833 6j4y:I (4.3) BS01 ZN ? GO:0000428 ... F2QPE6 30733384
    485834 6j4y:I (4.3) BS02 ZN ? GO:0000428 ... F2QPE6 30733384
    485835 6j4y:J (4.3) BS01 ZN ? GO:0000428 ... C4R009 30733384
    485836 6j4y:L (4.3) BS01 ZN ? GO:0001054 ... F2QMI1 30733384
    485837 6j4y:M (4.3) BS01 ZN ? GO:0000993 ... C4QZ45 30733384
    485838 6j4y:V (4.3) BS01 ZN ? GO:0000775 ... C4R0E6 30733384
    485839 6j4y:W (4.3) BS01 dna ? GO:0003711 ... C4R370 30733384
    485840 6j4y:W (4.3) BS02 dna ? GO:0003711 ... C4R370 30733384
    485841 6j4y:a (4.3) BS01 dna ? GO:0000775 ... P84243 30733384
    485842 6j4y:a (4.3) BS02 dna ? GO:0000775 ... P84243 30733384
    485843 6j4y:b (4.3) BS01 dna ? GO:0000781 ... P62805 30733384
    485844 6j4y:b (4.3) BS02 dna ? GO:0000781 ... P62805 30733384
    485845 6j4y:c (4.3) BS01 dna ? GO:0000786 ... P04908 30733384
    485846 6j4y:c (4.3) BS02 dna ? GO:0000786 ... P04908 30733384
    485847 6j4y:d (4.3) BS01 dna ? GO:0000786 ... P06899 30733384
    485848 6j4y:d (4.3) BS02 dna ? GO:0000786 ... P06899 30733384
    485849 6j4y:e (4.3) BS01 dna ? GO:0000775 ... P84243 30733384
    485850 6j4y:e (4.3) BS02 dna ? GO:0000775 ... P84243 30733384
    485851 6j4y:f (4.3) BS01 dna ? GO:0000781 ... P62805 30733384
    485852 6j4z:A (4.1) BS01 rna 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485853 6j4z:A (4.1) BS02 dna 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485854 6j4z:A (4.1) BS03 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485855 6j4z:A (4.1) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485856 6j4z:A (4.1) BS05 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485857 6j4z:B (4.1) BS01 rna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    485858 6j4z:B (4.1) BS02 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    485859 6j4z:B (4.1) BS03 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    485860 6j4z:B (4.1) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    485861 6j4z:E (4.1) BS01 dna ? GO:0001054 ... C4R3P8 30733384
    485862 6j4z:I (4.1) BS01 ZN ? GO:0000428 ... F2QPE6 30733384
    485863 6j4z:I (4.1) BS02 ZN ? GO:0000428 ... F2QPE6 30733384
    485864 6j4z:J (4.1) BS01 ZN ? GO:0000428 ... C4R009 30733384
    485865 6j4z:L (4.1) BS01 ZN ? GO:0001054 ... F2QMI1 30733384
    485866 6j4z:V (4.1) BS01 ZN ? GO:0000775 ... C4R0E6 30733384
    485867 6j4z:W (4.1) BS01 dna ? GO:0003711 ... C4R370 30733384
    485868 6j4z:W (4.1) BS02 dna ? GO:0003711 ... C4R370 30733384
    485869 6j4z:a (4.1) BS01 dna ? GO:0000775 ... P84243 30733384
    485870 6j4z:a (4.1) BS02 dna ? GO:0000775 ... P84243 30733384
    485871 6j4z:b (4.1) BS01 dna ? GO:0000781 ... P62805 30733384
    485872 6j4z:b (4.1) BS02 dna ? GO:0000781 ... P62805 30733384
    485873 6j4z:c (4.1) BS01 dna ? GO:0000786 ... P04908 30733384
    485874 6j4z:c (4.1) BS02 dna ? GO:0000786 ... P04908 30733384
    485875 6j4z:d (4.1) BS01 dna ? GO:0000786 ... P06899 30733384
    485876 6j4z:d (4.1) BS02 dna ? GO:0000786 ... P06899 30733384
    485877 6j4z:e (4.1) BS01 dna ? GO:0000775 ... P84243 30733384
    485878 6j4z:e (4.1) BS02 dna ? GO:0000775 ... P84243 30733384
    485879 6j4z:f (4.1) BS01 dna ? GO:0000781 ... P62805 30733384
    485880 6j4z:f (4.1) BS02 dna ? GO:0000781 ... P62805 30733384
    485881 6j4z:g (4.1) BS01 dna ? GO:0000786 ... P04908 30733384
    485882 6j4z:g (4.1) BS02 dna ? GO:0000786 ... P04908 30733384
    485883 6j4z:h (4.1) BS01 dna ? GO:0000786 ... P06899 30733384
    485884 6j50:A (4.7) BS01 rna 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485885 6j50:A (4.7) BS02 dna 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485886 6j50:A (4.7) BS03 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485887 6j50:A (4.7) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485888 6j50:A (4.7) BS05 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485889 6j50:B (4.7) BS01 rna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    485890 6j50:B (4.7) BS02 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    485891 6j50:B (4.7) BS03 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    485892 6j50:B (4.7) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    485893 6j50:E (4.7) BS01 dna ? GO:0001054 ... C4R3P8 30733384
    485894 6j50:I (4.7) BS01 ZN ? GO:0000428 ... F2QPE6 30733384
    485895 6j50:I (4.7) BS02 ZN ? GO:0000428 ... F2QPE6 30733384
    485896 6j50:J (4.7) BS01 ZN ? GO:0000428 ... C4R009 30733384
    485897 6j50:L (4.7) BS01 ZN ? GO:0001054 ... F2QMI1 30733384
    485898 6j50:V (4.7) BS01 ZN ? GO:0000775 ... C4R0E6 30733384
    485899 6j50:W (4.7) BS01 dna ? GO:0003711 ... C4R370 30733384
    485900 6j50:W (4.7) BS02 dna ? GO:0003711 ... C4R370 30733384
    485901 6j50:W (4.7) BS03 dna ? GO:0003711 ... C4R370 30733384
    485902 6j50:a (4.7) BS01 dna ? GO:0000775 ... P84243 30733384
    485903 6j50:a (4.7) BS02 dna ? GO:0000775 ... P84243 30733384
    485904 6j50:b (4.7) BS01 dna ? GO:0000781 ... P62805 30733384
    485905 6j50:b (4.7) BS02 dna ? GO:0000781 ... P62805 30733384
    485906 6j50:c (4.7) BS01 dna ? GO:0000786 ... P04908 30733384
    485907 6j50:c (4.7) BS02 dna ? GO:0000786 ... P04908 30733384
    485908 6j50:d (4.7) BS01 dna ? GO:0000786 ... P06899 30733384
    485909 6j50:d (4.7) BS02 dna ? GO:0000786 ... P06899 30733384
    485910 6j50:e (4.7) BS01 dna ? GO:0000775 ... P84243 30733384
    485911 6j50:e (4.7) BS02 dna ? GO:0000775 ... P84243 30733384
    485912 6j50:f (4.7) BS01 dna ? GO:0000781 ... P62805 30733384
    485913 6j50:f (4.7) BS02 dna ? GO:0000781 ... P62805 30733384
    485914 6j50:g (4.7) BS01 dna ? GO:0000786 ... P04908 30733384
    485915 6j50:g (4.7) BS02 dna ? GO:0000786 ... P04908 30733384
    485916 6j50:h (4.7) BS01 dna ? GO:0000786 ... P06899 30733384
    485917 6j51:A (4.2) BS01 rna 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485918 6j51:A (4.2) BS02 dna 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485919 6j51:A (4.2) BS03 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485920 6j51:A (4.2) BS04 ZN 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485921 6j51:A (4.2) BS05 MG 2.7.7.6 GO:0000428 ... C4R4Y0 30733384
    485922 6j51:B (4.2) BS01 rna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    485923 6j51:B (4.2) BS02 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    485924 6j51:B (4.2) BS03 dna 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    485925 6j51:B (4.2) BS04 ZN 2.7.7.6 GO:0000428 ... C4QZQ7 30733384
    485926 6j51:I (4.2) BS01 ZN ? GO:0000428 ... F2QPE6 30733384
    485927 6j51:I (4.2) BS02 ZN ? GO:0000428 ... F2QPE6 30733384
    485928 6j51:J (4.2) BS01 ZN ? GO:0000428 ... C4R009 30733384
    485929 6j51:L (4.2) BS01 ZN ? GO:0001054 ... F2QMI1 30733384
    485930 6j51:M (4.2) BS01 ZN ? GO:0000993 ... C4QZ45 30733384
    485931 6j51:V (4.2) BS01 ZN ? GO:0000775 ... C4R0E6 30733384
    485932 6j51:W (4.2) BS01 dna ? GO:0003711 ... C4R370 30733384
    485933 6j51:W (4.2) BS02 dna ? GO:0003711 ... C4R370 30733384
    485934 6j51:a (4.2) BS01 dna ? GO:0000775 ... P84243 30733384
    485935 6j51:a (4.2) BS02 dna ? GO:0000775 ... P84243 30733384
    485936 6j51:b (4.2) BS01 dna ? GO:0000781 ... P62805 30733384
    485937 6j51:b (4.2) BS02 dna ? GO:0000781 ... P62805 30733384
    485938 6j51:c (4.2) BS01 dna ? GO:0000786 ... P04908 30733384
    485939 6j51:c (4.2) BS02 dna ? GO:0000786 ... P04908 30733384
    485940 6j51:d (4.2) BS01 dna ? GO:0000786 ... P06899 30733384
    485941 6j51:d (4.2) BS02 dna ? GO:0000786 ... P06899 30733384
    485942 6j51:e (4.2) BS01 dna ? GO:0000775 ... P84243 30733384
    485943 6j51:e (4.2) BS02 dna ? GO:0000775 ... P84243 30733384
    485944 6j51:f (4.2) BS01 dna ? GO:0000781 ... P62805 30733384
    485945 6j51:g (4.2) BS01 dna ? GO:0000786 ... P04908 30733384
    485946 6j51:g (4.2) BS02 dna ? GO:0000786 ... P04908 30733384
    485947 6j51:h (4.2) BS01 dna ? GO:0000786 ... P06899 30733384
    485948 6j53:B (1.52) BS01 AMP 3.4.22.-
    3.9.1.-
    GO:0000118 ... P49773 31604935
    485949 6j54:a (3.94) BS01 peptide ? GO:0005739 ... Q35915 31197009
    485950 6j54:f (3.94) BS01 peptide ? GO:0005739 ... Q95339 31197009
    485951 6j55:A (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    485952 6j55:B (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    485953 6j55:C (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    485954 6j55:D (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    485955 6j55:E (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    485956 6j55:F (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    485957 6j55:G (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    485958 6j55:H (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    485959 6j55:I (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    485960 6j55:J (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    485961 6j55:K (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    485962 6j55:L (2.33) BS01 FE2 1.15.1.1 GO:0004784 ... Q5IZD9 31282867
    485963 6j56:A (1.798) BS01 peptide ? N/A Q9UM54 31371777
    485964 6j56:B (1.798) BS01 peptide ? N/A Q9UM54 31371777
    485965 6j58:B (1.521) BS01 AMP 3.4.22.-
    3.9.1.-
    GO:0000118 ... P49773 31604935
    485966 6j5a:a (4.35) BS01 peptide ? GO:0005739 ... Q35915 31197009
    485967 6j5a:a (4.35) BS02 peptide ? GO:0005739 ... Q35915 31197009
    485968 6j5b:A (2.7) BS01 dna ? GO:0003677 ... Q94CL7 30974511
    485969 6j5b:A (2.7) BS02 dna ? GO:0003677 ... Q94CL7 30974511
    485970 6j5b:C (2.7) BS01 dna ? GO:0003677 ... Q94CL7 30974511
    485971 6j5b:C (2.7) BS02 dna ? GO:0003677 ... Q94CL7 30974511
    485972 6j5b:D (2.7) BS01 dna ? GO:0003677 ... Q94CL7 30974511
    485973 6j5b:D (2.7) BS02 dna ? GO:0003677 ... Q94CL7 30974511
    485974 6j5b:F (2.7) BS01 dna ? GO:0003677 ... Q94CL7 30974511
    485975 6j5b:F (2.7) BS02 dna ? GO:0003677 ... Q94CL7 30974511
    485976 6j5b:H (2.7) BS01 dna ? GO:0003677 ... Q94CL7 30974511
    485977 6j5b:H (2.7) BS02 dna ? GO:0003677 ... Q94CL7 30974511
    485978 6j5b:J (2.7) BS01 dna ? GO:0003677 ... Q94CL7 30974511
    485979 6j5b:J (2.7) BS02 dna ? GO:0003677 ... Q94CL7 30974511
    485980 6j5e:G (2.33) BS01 peptide ? N/A P04578 N/A
    485981 6j5e:G (2.33) BS02 peptide ? N/A P04578 N/A
    485982 6j5e:I (2.33) BS01 peptide ? N/A P04578 N/A
    485983 6j5e:I (2.33) BS02 peptide ? N/A P04578 N/A
    485984 6j5e:K (2.33) BS01 peptide ? N/A P04578 N/A
    485985 6j5e:K (2.33) BS02 peptide ? N/A P04578 N/A
    485986 6j5i:A (3.34) BS01 ATP ? GO:0005524 ... P80021 31197009
    485987 6j5i:B (3.34) BS01 ATP ? GO:0005524 ... P80021 31197009
    485988 6j5i:B (3.34) BS02 MG ? GO:0005524 ... P80021 31197009
    485989 6j5i:C (3.34) BS01 ATP ? GO:0005524 ... P80021 31197009
    485990 6j5i:D (3.34) BS01 ADP 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    485991 6j5i:D (3.34) BS02 MG 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    485992 6j5i:F (3.34) BS01 ADP 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    485993 6j5i:a (3.34) BS01 peptide ? GO:0005739 ... Q35915 31197009
    485994 6j5j:A (3.45) BS01 ATP ? GO:0005524 ... P80021 31197009
    485995 6j5j:B (3.45) BS01 ATP ? GO:0005524 ... P80021 31197009
    485996 6j5j:C (3.45) BS01 ATP ? GO:0005524 ... P80021 31197009
    485997 6j5j:D (3.45) BS01 ADP 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    485998 6j5j:D (3.45) BS02 MG 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    485999 6j5j:F (3.45) BS01 ADP 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    486000 6j5k:A (6.2) BS01 ATP ? GO:0005524 ... P80021 31197009

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).