SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    486001 6j5k:AA (6.2) BS01 ATP ? GO:0005524 ... P80021 31197009
    486002 6j5k:AB (6.2) BS01 ATP ? GO:0005524 ... P80021 31197009
    486003 6j5k:AC (6.2) BS01 ATP ? GO:0005524 ... P80021 31197009
    486004 6j5k:AD (6.2) BS01 ADP 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    486005 6j5k:AD (6.2) BS02 MG 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    486006 6j5k:AF (6.2) BS01 ADP 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    486007 6j5k:B (6.2) BS01 ATP ? GO:0005524 ... P80021 31197009
    486008 6j5k:BA (6.2) BS01 ATP ? GO:0005524 ... P80021 31197009
    486009 6j5k:BB (6.2) BS01 ATP ? GO:0005524 ... P80021 31197009
    486010 6j5k:BB (6.2) BS02 MG ? GO:0005524 ... P80021 31197009
    486011 6j5k:BC (6.2) BS01 ATP ? GO:0005524 ... P80021 31197009
    486012 6j5k:BD (6.2) BS01 ADP 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    486013 6j5k:BD (6.2) BS02 MG 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    486014 6j5k:BF (6.2) BS01 ADP 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    486015 6j5k:Ba (6.2) BS01 peptide ? GO:0005739 ... Q35915 31197009
    486016 6j5k:C (6.2) BS01 ATP ? GO:0005524 ... P80021 31197009
    486017 6j5k:CA (6.2) BS01 ATP ? GO:0005524 ... P80021 31197009
    486018 6j5k:CB (6.2) BS01 ATP ? GO:0005524 ... P80021 31197009
    486019 6j5k:CB (6.2) BS02 MG ? GO:0005524 ... P80021 31197009
    486020 6j5k:CC (6.2) BS01 ATP ? GO:0005524 ... P80021 31197009
    486021 6j5k:CD (6.2) BS01 ADP 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    486022 6j5k:CD (6.2) BS02 MG 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    486023 6j5k:CF (6.2) BS01 ADP 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    486024 6j5k:Ca (6.2) BS01 peptide ? GO:0005739 ... Q35915 31197009
    486025 6j5k:D (6.2) BS01 ADP 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    486026 6j5k:D (6.2) BS02 MG 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    486027 6j5k:F (6.2) BS01 ADP 7.1.2.2 GO:0005524 ... K7GLT8 31197009
    486028 6j5l:A (2.3) BS01 B9C 2.7.10.1 GO:0004672 ... P04629 31235262 MOAD: ic50=1.6nM
    BindingDB: IC50=1.6nM
    486029 6j5s:B (1.02) BS01 AP5 3.4.22.-
    3.9.1.-
    GO:0000118 ... P49773 31604935
    486030 6j5s:B (1.02) BS02 ESA 3.4.22.-
    3.9.1.-
    GO:0000118 ... P49773 31604935
    486031 6j5t:A (3.4) BS01 U5P 2.7.11.1 GO:0004672 ... O49839 30948527
    486032 6j5t:B (3.4) BS01 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    486033 6j5t:B (3.4) BS02 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    486034 6j5t:C (3.4) BS01 DTP ? GO:0000166 ... Q38834 30948527
    486035 6j5t:D (3.4) BS01 U5P 2.7.11.1 GO:0004672 ... O49839 30948527
    486036 6j5t:E (3.4) BS01 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    486037 6j5t:E (3.4) BS02 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    486038 6j5t:F (3.4) BS01 DTP ? GO:0000166 ... Q38834 30948527
    486039 6j5t:G (3.4) BS01 DTP ? GO:0000166 ... Q38834 30948527
    486040 6j5t:H (3.4) BS01 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    486041 6j5t:H (3.4) BS02 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    486042 6j5t:I (3.4) BS01 U5P 2.7.11.1 GO:0004672 ... O49839 30948527
    486043 6j5t:J (3.4) BS01 U5P 2.7.11.1 GO:0004672 ... O49839 30948527
    486044 6j5t:K (3.4) BS01 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    486045 6j5t:K (3.4) BS02 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    486046 6j5t:L (3.4) BS01 DTP ? GO:0000166 ... Q38834 30948527
    486047 6j5t:M (3.4) BS01 U5P 2.7.11.1 GO:0004672 ... O49839 30948527
    486048 6j5t:N (3.4) BS01 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    486049 6j5t:N (3.4) BS02 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    486050 6j5t:O (3.4) BS01 DTP ? GO:0000166 ... Q38834 30948527
    486051 6j5u:B (3.9) BS01 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948526
    486052 6j5u:B (3.9) BS02 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948526
    486053 6j5u:C (3.9) BS01 U5P 2.7.11.1 GO:0004672 ... O49839 30948526
    486054 6j5v:B (4.25) BS01 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948526
    486055 6j5v:B (4.25) BS02 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948526
    486056 6j5v:C (4.25) BS01 U5P 2.7.11.1 GO:0004672 ... O49839 30948526
    486057 6j5w:A (3.7) BS01 ADP ? GO:0000166 ... Q38834 30948526
    486058 6j5x:A (1.79) BS01 MN 4.1.1.-
    5.3.3.-
    GO:0003824 ... Q8NLC0 31657110
    486059 6j5x:B (1.79) BS01 MN 4.1.1.-
    5.3.3.-
    GO:0003824 ... Q8NLC0 31657110
    486060 6j5x:B (1.79) BS02 PYR 4.1.1.-
    5.3.3.-
    GO:0003824 ... Q8NLC0 31657110
    486061 6j5y:A (1.98) BS01 PYR ? GO:0003824 ... Q9I111 31657110
    486062 6j5y:A (1.98) BS02 MN ? GO:0003824 ... Q9I111 31657110
    486063 6j5z:A (1.3) BS01 ESA 3.4.22.-
    3.9.1.-
    GO:0000118 ... P49773 31604935
    486064 6j5z:A (1.3) BS02 ADN 3.4.22.-
    3.9.1.-
    GO:0000118 ... P49773 31604935
    486065 6j5z:D (1.3) BS01 ADN 3.4.22.-
    3.9.1.-
    GO:0000118 ... P49773 31604935
    486066 6j61:A (2.5) BS01 FAD 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    486067 6j61:A (2.5) BS02 PO4 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    486068 6j61:A (2.5) BS03 PO4 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    486069 6j61:A (2.5) BS04 FAD 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    486070 6j61:A (2.5) BS05 PO4 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    486071 6j61:A (2.5) BS06 FAD 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    486072 6j61:B (2.5) BS01 FAD 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    486073 6j61:B (2.5) BS02 PO4 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    486074 6j61:B (2.5) BS03 PO4 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    486075 6j61:B (2.5) BS04 FAD 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    486076 6j61:B (2.5) BS05 FAD 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    486077 6j61:B (2.5) BS06 PO4 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    486078 6j61:C (2.5) BS01 FAD 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    486079 6j61:C (2.5) BS02 FAD 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    486080 6j61:C (2.5) BS03 PO4 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    486081 6j61:C (2.5) BS04 PO4 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    486082 6j61:C (2.5) BS05 FAD 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    486083 6j61:D (2.5) BS01 FAD 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    486084 6j61:D (2.5) BS02 PO4 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    486085 6j61:D (2.5) BS03 FAD 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    486086 6j61:D (2.5) BS04 FAD 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    486087 6j61:D (2.5) BS05 PO4 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    486088 6j61:D (2.5) BS06 PO4 2.1.1.148 GO:0004799 ... Q5SJB8 31204692
    486089 6j63:A (2.624) BS01 FE 1.13.11.27 GO:0003868 ... P93836 30632699
    486090 6j63:A (2.624) BS02 NTD 1.13.11.27 GO:0003868 ... P93836 30632699
    486091 6j63:B (2.624) BS01 FE 1.13.11.27 GO:0003868 ... P93836 30632699
    486092 6j63:B (2.624) BS02 NTD 1.13.11.27 GO:0003868 ... P93836 30632699
    486093 6j63:C (2.624) BS01 FE 1.13.11.27 GO:0003868 ... P93836 30632699
    486094 6j63:C (2.624) BS02 NTD 1.13.11.27 GO:0003868 ... P93836 30632699
    486095 6j63:D (2.624) BS01 FE 1.13.11.27 GO:0003868 ... P93836 30632699
    486096 6j63:D (2.624) BS02 NTD 1.13.11.27 GO:0003868 ... P93836 30632699
    486097 6j64:B (0.95) BS01 B4P 3.4.22.-
    3.9.1.-
    GO:0000118 ... P49773 31604935
    486098 6j65:B (1.42) BS01 B4P 3.4.22.-
    3.9.1.-
    GO:0000118 ... P49773 31604935
    486099 6j65:E (1.42) BS01 B4P 3.4.22.-
    3.9.1.-
    GO:0000118 ... P49773 31604935
    486100 6j66:A (1.953) BS01 CA 3.1.6.12 N/A A0A0C5AQI9 31244815
    486101 6j66:B (1.953) BS01 CA 3.1.6.12 N/A A0A0C5AQI9 31244815
    486102 6j67:A (2.05) BS01 peptide ? GO:0000723 ... Q15554 29795768
    486103 6j68:A (2.495) BS01 peptide ? N/A Q5SXA9 31486770
    486104 6j68:B (2.495) BS01 peptide ? N/A Q5SXA9 31486770
    486105 6j69:A (2.753) BS01 peptide ? N/A Q5SXA9 30784589
    486106 6j6g:A (3.2) BS01 peptide ? GO:0000244 ... P33334 30879786
    486107 6j6g:A (3.2) BS02 rna ? GO:0000244 ... P33334 30879786
    486108 6j6g:A (3.2) BS03 rna ? GO:0000244 ... P33334 30879786
    486109 6j6g:A (3.2) BS04 rna ? GO:0000244 ... P33334 30879786
    486110 6j6g:A (3.2) BS05 rna ? GO:0000244 ... P33334 30879786
    486111 6j6g:A (3.2) BS06 IHP ? GO:0000244 ... P33334 30879786
    486112 6j6g:C (3.2) BS01 rna ? GO:0000244 ... P36048 30879786
    486113 6j6g:C (3.2) BS02 GTP ? GO:0000244 ... P36048 30879786
    486114 6j6g:C (3.2) BS03 MG ? GO:0000244 ... P36048 30879786
    486115 6j6g:I (3.2) BS01 rna ? GO:0000384 ... P53277 30879786
    486116 6j6g:I (3.2) BS02 rna ? GO:0000384 ... P53277 30879786
    486117 6j6g:P (3.2) BS01 rna ? GO:0000350 ... P28004 30879786
    486118 6j6g:P (3.2) BS02 rna ? GO:0000350 ... P28004 30879786
    486119 6j6g:P (3.2) BS03 rna ? GO:0000350 ... P28004 30879786
    486120 6j6g:Q (3.2) BS01 rna ? GO:0000398 ... P38241 30879786
    486121 6j6g:Q (3.2) BS02 rna ? GO:0000398 ... P38241 30879786
    486122 6j6g:Q (3.2) BS03 ZN ? GO:0000398 ... P38241 30879786
    486123 6j6g:Q (3.2) BS04 ZN ? GO:0000398 ... P38241 30879786
    486124 6j6g:R (3.2) BS01 rna ? GO:0000387 ... Q12046 30879786
    486125 6j6g:R (3.2) BS02 rna ? GO:0000387 ... Q12046 30879786
    486126 6j6g:R (3.2) BS03 rna ? GO:0000387 ... Q12046 30879786
    486127 6j6g:R (3.2) BS04 ZN ? GO:0000387 ... Q12046 30879786
    486128 6j6g:S (3.2) BS01 rna ? GO:0000398 ... Q03772 30879786
    486129 6j6g:S (3.2) BS02 rna ? GO:0000398 ... Q03772 30879786
    486130 6j6g:S (3.2) BS03 rna ? GO:0000398 ... Q03772 30879786
    486131 6j6g:T (3.2) BS01 rna ? GO:0000282 ... P25337 30879786
    486132 6j6g:T (3.2) BS02 rna ? GO:0000282 ... P25337 30879786
    486133 6j6g:T (3.2) BS03 ZN ? GO:0000282 ... P25337 30879786
    486134 6j6g:T (3.2) BS04 ZN ? GO:0000282 ... P25337 30879786
    486135 6j6g:T (3.2) BS05 ZN ? GO:0000282 ... P25337 30879786
    486136 6j6g:Z (3.2) BS01 peptide ? GO:0000398 ... P53333 30879786
    486137 6j6g:a (3.2) BS01 rna ? GO:0000398 ... P40567 30879786
    486138 6j6g:c (3.2) BS01 rna ? GO:0000350 ... Q03654 30879786
    486139 6j6g:c (3.2) BS02 rna ? GO:0000350 ... Q03654 30879786
    486140 6j6g:c (3.2) BS03 rna ? GO:0000350 ... Q03654 30879786
    486141 6j6g:d (3.2) BS01 rna ? GO:0000245 ... Q12309 30879786
    486142 6j6g:e (3.2) BS01 rna ? GO:0000243 ... Q06217 30879786
    486143 6j6g:g (3.2) BS01 rna ? GO:0000243 ... Q06217 30879786
    486144 6j6g:h (3.2) BS01 rna ? GO:0000243 ... P54999 30879786
    486145 6j6g:i (3.2) BS01 rna ? GO:0000243 ... Q12330 30879786
    486146 6j6g:j (3.2) BS01 rna ? GO:0000243 ... P40204 30879786
    486147 6j6g:k (3.2) BS01 rna ? GO:0000243 ... P40018 30879786
    486148 6j6g:l (3.2) BS01 rna ? GO:0000243 ... P43321 30879786
    486149 6j6g:m (3.2) BS01 rna ? GO:0000243 ... Q02260 30879786
    486150 6j6g:n (3.2) BS01 rna ? GO:0000348 ... P40968 30879786
    486151 6j6g:n (3.2) BS02 rna ? GO:0000348 ... P40968 30879786
    486152 6j6g:s (3.2) BS01 rna ? GO:0000243 ... P40018 30879786
    486153 6j6g:u (3.2) BS01 rna ? GO:0000243 ... Q12330 30879786
    486154 6j6g:w (3.2) BS01 rna ? GO:0000243 ... P54999 30879786
    486155 6j6g:x (3.2) BS01 rna ? GO:0000243 ... P40204 30879786
    486156 6j6g:y (3.2) BS01 rna ? GO:0000243 ... P43321 30879786
    486157 6j6g:z (3.2) BS01 rna ? GO:0000243 ... Q02260 30879786
    486158 6j6h:A (3.6) BS01 peptide ? GO:0000244 ... P33334 30879786
    486159 6j6h:A (3.6) BS02 rna ? GO:0000244 ... P33334 30879786
    486160 6j6h:A (3.6) BS03 rna ? GO:0000244 ... P33334 30879786
    486161 6j6h:A (3.6) BS04 rna ? GO:0000244 ... P33334 30879786
    486162 6j6h:A (3.6) BS05 rna ? GO:0000244 ... P33334 30879786
    486163 6j6h:A (3.6) BS06 IHP ? GO:0000244 ... P33334 30879786
    486164 6j6h:C (3.6) BS01 rna ? GO:0000244 ... P36048 30879786
    486165 6j6h:C (3.6) BS02 GTP ? GO:0000244 ... P36048 30879786
    486166 6j6h:C (3.6) BS03 MG ? GO:0000244 ... P36048 30879786
    486167 6j6h:I (3.6) BS01 rna ? GO:0000384 ... P53277 30879786
    486168 6j6h:I (3.6) BS02 rna ? GO:0000384 ... P53277 30879786
    486169 6j6h:P (3.6) BS01 rna ? GO:0000350 ... P28004 30879786
    486170 6j6h:P (3.6) BS02 rna ? GO:0000350 ... P28004 30879786
    486171 6j6h:Q (3.6) BS01 rna ? GO:0000398 ... P38241 30879786
    486172 6j6h:Q (3.6) BS02 rna ? GO:0000398 ... P38241 30879786
    486173 6j6h:Q (3.6) BS03 ZN ? GO:0000398 ... P38241 30879786
    486174 6j6h:Q (3.6) BS04 ZN ? GO:0000398 ... P38241 30879786
    486175 6j6h:R (3.6) BS01 rna ? GO:0000387 ... Q12046 30879786
    486176 6j6h:R (3.6) BS02 rna ? GO:0000387 ... Q12046 30879786
    486177 6j6h:R (3.6) BS03 ZN ? GO:0000387 ... Q12046 30879786
    486178 6j6h:S (3.6) BS01 rna ? GO:0000398 ... Q03772 30879786
    486179 6j6h:S (3.6) BS02 rna ? GO:0000398 ... Q03772 30879786
    486180 6j6h:S (3.6) BS03 rna ? GO:0000398 ... Q03772 30879786
    486181 6j6h:T (3.6) BS01 peptide ? GO:0000282 ... P25337 30879786
    486182 6j6h:T (3.6) BS02 rna ? GO:0000282 ... P25337 30879786
    486183 6j6h:T (3.6) BS03 rna ? GO:0000282 ... P25337 30879786
    486184 6j6h:T (3.6) BS04 ZN ? GO:0000282 ... P25337 30879786
    486185 6j6h:T (3.6) BS05 ZN ? GO:0000282 ... P25337 30879786
    486186 6j6h:T (3.6) BS06 ZN ? GO:0000282 ... P25337 30879786
    486187 6j6h:Z (3.6) BS01 peptide ? GO:0000398 ... P53333 30879786
    486188 6j6h:a (3.6) BS01 rna ? GO:0000398 ... P40567 30879786
    486189 6j6h:c (3.6) BS01 rna ? GO:0000350 ... Q03654 30879786
    486190 6j6h:c (3.6) BS02 rna ? GO:0000350 ... Q03654 30879786
    486191 6j6h:c (3.6) BS03 rna ? GO:0000350 ... Q03654 30879786
    486192 6j6h:d (3.6) BS01 rna ? GO:0000245 ... Q12309 30879786
    486193 6j6h:e (3.6) BS01 rna ? GO:0000243 ... Q06217 30879786
    486194 6j6h:g (3.6) BS01 rna ? GO:0000243 ... Q06217 30879786
    486195 6j6h:h (3.6) BS01 rna ? GO:0000243 ... P54999 30879786
    486196 6j6h:i (3.6) BS01 rna ? GO:0000243 ... Q12330 30879786
    486197 6j6h:j (3.6) BS01 rna ? GO:0000243 ... P40204 30879786
    486198 6j6h:k (3.6) BS01 rna ? GO:0000243 ... P40018 30879786
    486199 6j6h:l (3.6) BS01 rna ? GO:0000243 ... P43321 30879786
    486200 6j6h:m (3.6) BS01 rna ? GO:0000243 ... Q02260 30879786

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).