SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    486201 6j6h:s (3.6) BS01 rna ? GO:0000243 ... P40018 30879786
    486202 6j6h:u (3.6) BS01 rna ? GO:0000243 ... Q12330 30879786
    486203 6j6h:v (3.6) BS01 rna ? GO:0000349 ... Q04048 30879786
    486204 6j6h:w (3.6) BS01 rna ? GO:0000243 ... P54999 30879786
    486205 6j6h:x (3.6) BS01 rna ? GO:0000243 ... P40204 30879786
    486206 6j6h:y (3.6) BS01 rna ? GO:0000243 ... P43321 30879786
    486207 6j6h:z (3.6) BS01 rna ? GO:0000243 ... Q02260 30879786
    486208 6j6i:A (3.7) BS01 U5P 2.7.11.1 GO:0004672 ... O49839 30948527
    486209 6j6i:B (3.7) BS01 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    486210 6j6i:B (3.7) BS02 U5P 2.7.11.1 GO:0004672 ... Q9SVY5 30948527
    486211 6j6i:C (3.7) BS01 DTP ? GO:0000166 ... Q38834 30948527
    486212 6j6i:F (3.7) BS01 DTP ? GO:0000166 ... Q38834 30948527
    486213 6j6i:G (3.7) BS01 DTP ? GO:0000166 ... Q38834 30948527
    486214 6j6i:L (3.7) BS01 DTP ? GO:0000166 ... Q38834 30948527
    486215 6j6i:O (3.7) BS01 DTP ? GO:0000166 ... Q38834 30948527
    486216 6j6j:A (3.2) BS01 BTN ? GO:0009374 ... P22629 31160591 BindingDB: Kd=1.000000nM
    486217 6j6j:B (3.2) BS01 BTN ? GO:0009374 ... P22629 31160591 BindingDB: Kd=1.000000nM
    486218 6j6j:C (3.2) BS01 BTN ? GO:0009374 ... P22629 31160591 BindingDB: Kd=1.000000nM
    486219 6j6j:D (3.2) BS01 BTN ? GO:0009374 ... P22629 31160591 BindingDB: Kd=1.000000nM
    486220 6j6m:A (1.25) BS01 BA0 2.7.10.2 GO:0004672 ... Q06187 31381333
    486221 6j6n:A (3.86) BS01 peptide ? GO:0000244 ... P33334 30879786
    486222 6j6n:A (3.86) BS02 rna ? GO:0000244 ... P33334 30879786
    486223 6j6n:A (3.86) BS03 rna ? GO:0000244 ... P33334 30879786
    486224 6j6n:A (3.86) BS04 rna ? GO:0000244 ... P33334 30879786
    486225 6j6n:A (3.86) BS05 rna ? GO:0000244 ... P33334 30879786
    486226 6j6n:A (3.86) BS06 IHP ? GO:0000244 ... P33334 30879786
    486227 6j6n:C (3.86) BS01 rna ? GO:0000244 ... P36048 30879786
    486228 6j6n:C (3.86) BS02 GTP ? GO:0000244 ... P36048 30879786
    486229 6j6n:C (3.86) BS03 MG ? GO:0000244 ... P36048 30879786
    486230 6j6n:H (3.86) BS01 rna ? GO:0000350 ... P21374 30879786
    486231 6j6n:H (3.86) BS02 rna ? GO:0000350 ... P21374 30879786
    486232 6j6n:I (3.86) BS01 rna ? GO:0000384 ... P53277 30879786
    486233 6j6n:I (3.86) BS02 rna ? GO:0000384 ... P53277 30879786
    486234 6j6n:P (3.86) BS01 rna ? GO:0000350 ... P28004 30879786
    486235 6j6n:P (3.86) BS02 rna ? GO:0000350 ... P28004 30879786
    486236 6j6n:P (3.86) BS03 rna ? GO:0000350 ... P28004 30879786
    486237 6j6n:Q (3.86) BS01 rna ? GO:0000398 ... P38241 30879786
    486238 6j6n:Q (3.86) BS02 rna ? GO:0000398 ... P38241 30879786
    486239 6j6n:Q (3.86) BS03 ZN ? GO:0000398 ... P38241 30879786
    486240 6j6n:Q (3.86) BS04 ZN ? GO:0000398 ... P38241 30879786
    486241 6j6n:R (3.86) BS01 rna ? GO:0000387 ... Q12046 30879786
    486242 6j6n:R (3.86) BS02 rna ? GO:0000387 ... Q12046 30879786
    486243 6j6n:R (3.86) BS03 rna ? GO:0000387 ... Q12046 30879786
    486244 6j6n:R (3.86) BS04 ZN ? GO:0000387 ... Q12046 30879786
    486245 6j6n:S (3.86) BS01 rna ? GO:0000398 ... Q03772 30879786
    486246 6j6n:S (3.86) BS02 rna ? GO:0000398 ... Q03772 30879786
    486247 6j6n:S (3.86) BS03 rna ? GO:0000398 ... Q03772 30879786
    486248 6j6n:T (3.86) BS01 rna ? GO:0000282 ... P25337 30879786
    486249 6j6n:T (3.86) BS02 rna ? GO:0000282 ... P25337 30879786
    486250 6j6n:T (3.86) BS03 ZN ? GO:0000282 ... P25337 30879786
    486251 6j6n:T (3.86) BS04 ZN ? GO:0000282 ... P25337 30879786
    486252 6j6n:T (3.86) BS05 ZN ? GO:0000282 ... P25337 30879786
    486253 6j6n:Z (3.86) BS01 peptide ? GO:0000398 ... P53333 30879786
    486254 6j6n:Z (3.86) BS02 rna ? GO:0000398 ... P53333 30879786
    486255 6j6n:a (3.86) BS01 rna ? GO:0000398 ... P40567 30879786
    486256 6j6n:c (3.86) BS01 rna ? GO:0000350 ... Q03654 30879786
    486257 6j6n:c (3.86) BS02 rna ? GO:0000350 ... Q03654 30879786
    486258 6j6n:d (3.86) BS01 rna ? GO:0000245 ... Q12309 30879786
    486259 6j6n:e (3.86) BS01 rna ? GO:0000243 ... Q06217 30879786
    486260 6j6n:g (3.86) BS01 rna ? GO:0000243 ... Q06217 30879786
    486261 6j6n:h (3.86) BS01 rna ? GO:0000243 ... P54999 30879786
    486262 6j6n:i (3.86) BS01 rna ? GO:0000243 ... Q12330 30879786
    486263 6j6n:j (3.86) BS01 rna ? GO:0000243 ... P40204 30879786
    486264 6j6n:k (3.86) BS01 rna ? GO:0000243 ... P40018 30879786
    486265 6j6n:l (3.86) BS01 rna ? GO:0000243 ... P43321 30879786
    486266 6j6n:m (3.86) BS01 rna ? GO:0000243 ... Q02260 30879786
    486267 6j6n:n (3.86) BS01 rna ? GO:0000348 ... P40968 30879786
    486268 6j6n:s (3.86) BS01 rna ? GO:0000243 ... P40018 30879786
    486269 6j6n:u (3.86) BS01 rna ? GO:0000243 ... Q12330 30879786
    486270 6j6n:v (3.86) BS01 rna ? GO:0000349 ... Q04048 30879786
    486271 6j6n:w (3.86) BS01 rna ? GO:0000243 ... P54999 30879786
    486272 6j6n:x (3.86) BS01 rna ? GO:0000243 ... P40204 30879786
    486273 6j6n:y (3.86) BS01 rna ? GO:0000243 ... P43321 30879786
    486274 6j6n:z (3.86) BS01 rna ? GO:0000243 ... Q02260 30879786
    486275 6j6o:A (1.848) BS01 GOL ? GO:0006816 ... I3NWV8 31597572
    486276 6j6o:A (1.848) BS02 GOL ? GO:0006816 ... I3NWV8 31597572
    486277 6j6p:A (1.53) BS01 GOL ? GO:0006816 ... I3NWV8 31597572
    486278 6j6p:A (1.53) BS02 GOL ? GO:0006816 ... I3NWV8 31597572
    486279 6j6p:A (1.53) BS03 GOL ? GO:0006816 ... I3NWV8 31597572
    486280 6j6p:A (1.53) BS04 GOL ? GO:0006816 ... I3NWV8 31597572
    486281 6j6p:A (1.53) BS05 GOL ? GO:0006816 ... I3NWV8 31597572
    486282 6j6q:A (3.7) BS01 peptide ? GO:0000244 ... P33334 30879786
    486283 6j6q:A (3.7) BS02 rna ? GO:0000244 ... P33334 30879786
    486284 6j6q:A (3.7) BS03 rna ? GO:0000244 ... P33334 30879786
    486285 6j6q:A (3.7) BS04 rna ? GO:0000244 ... P33334 30879786
    486286 6j6q:A (3.7) BS05 rna ? GO:0000244 ... P33334 30879786
    486287 6j6q:A (3.7) BS06 IHP ? GO:0000244 ... P33334 30879786
    486288 6j6q:C (3.7) BS01 rna ? GO:0000244 ... P36048 30879786
    486289 6j6q:C (3.7) BS02 GTP ? GO:0000244 ... P36048 30879786
    486290 6j6q:C (3.7) BS03 MG ? GO:0000244 ... P36048 30879786
    486291 6j6q:F (3.7) BS01 rna ? GO:0000349 ... P28320 30879786
    486292 6j6q:F (3.7) BS02 rna ? GO:0000349 ... P28320 30879786
    486293 6j6q:F (3.7) BS03 ZN ? GO:0000349 ... P28320 30879786
    486294 6j6q:H (3.7) BS01 rna ? GO:0000350 ... P21374 30879786
    486295 6j6q:H (3.7) BS02 rna ? GO:0000350 ... P21374 30879786
    486296 6j6q:I (3.7) BS01 rna ? GO:0000384 ... P53277 30879786
    486297 6j6q:I (3.7) BS02 rna ? GO:0000384 ... P53277 30879786
    486298 6j6q:P (3.7) BS01 rna ? GO:0000350 ... P28004 30879786
    486299 6j6q:P (3.7) BS02 rna ? GO:0000350 ... P28004 30879786
    486300 6j6q:P (3.7) BS03 rna ? GO:0000350 ... P28004 30879786
    486301 6j6q:Q (3.7) BS01 rna ? GO:0000398 ... P38241 30879786
    486302 6j6q:Q (3.7) BS02 rna ? GO:0000398 ... P38241 30879786
    486303 6j6q:Q (3.7) BS03 ZN ? GO:0000398 ... P38241 30879786
    486304 6j6q:Q (3.7) BS04 ZN ? GO:0000398 ... P38241 30879786
    486305 6j6q:R (3.7) BS01 rna ? GO:0000387 ... Q12046 30879786
    486306 6j6q:R (3.7) BS02 rna ? GO:0000387 ... Q12046 30879786
    486307 6j6q:R (3.7) BS03 rna ? GO:0000387 ... Q12046 30879786
    486308 6j6q:R (3.7) BS04 ZN ? GO:0000387 ... Q12046 30879786
    486309 6j6q:S (3.7) BS01 rna ? GO:0000398 ... Q03772 30879786
    486310 6j6q:S (3.7) BS02 rna ? GO:0000398 ... Q03772 30879786
    486311 6j6q:S (3.7) BS03 rna ? GO:0000398 ... Q03772 30879786
    486312 6j6q:T (3.7) BS01 rna ? GO:0000282 ... P25337 30879786
    486313 6j6q:T (3.7) BS02 rna ? GO:0000282 ... P25337 30879786
    486314 6j6q:T (3.7) BS03 ZN ? GO:0000282 ... P25337 30879786
    486315 6j6q:T (3.7) BS04 ZN ? GO:0000282 ... P25337 30879786
    486316 6j6q:T (3.7) BS05 ZN ? GO:0000282 ... P25337 30879786
    486317 6j6q:Z (3.7) BS01 peptide ? GO:0000398 ... P53333 30879786
    486318 6j6q:Z (3.7) BS02 rna ? GO:0000398 ... P53333 30879786
    486319 6j6q:a (3.7) BS01 rna ? GO:0000398 ... P40567 30879786
    486320 6j6q:c (3.7) BS01 rna ? GO:0000350 ... Q03654 30879786
    486321 6j6q:c (3.7) BS02 rna ? GO:0000350 ... Q03654 30879786
    486322 6j6q:c (3.7) BS03 rna ? GO:0000350 ... Q03654 30879786
    486323 6j6q:d (3.7) BS01 rna ? GO:0000245 ... Q12309 30879786
    486324 6j6q:e (3.7) BS01 rna ? GO:0000243 ... Q06217 30879786
    486325 6j6q:g (3.7) BS01 rna ? GO:0000243 ... Q06217 30879786
    486326 6j6q:h (3.7) BS01 rna ? GO:0000243 ... P54999 30879786
    486327 6j6q:i (3.7) BS01 rna ? GO:0000243 ... Q12330 30879786
    486328 6j6q:j (3.7) BS01 rna ? GO:0000243 ... P40204 30879786
    486329 6j6q:k (3.7) BS01 rna ? GO:0000243 ... P40018 30879786
    486330 6j6q:l (3.7) BS01 rna ? GO:0000243 ... P43321 30879786
    486331 6j6q:m (3.7) BS01 rna ? GO:0000243 ... Q02260 30879786
    486332 6j6q:n (3.7) BS01 rna ? GO:0000348 ... P40968 30879786
    486333 6j6q:n (3.7) BS02 rna ? GO:0000348 ... P40968 30879786
    486334 6j6q:s (3.7) BS01 rna ? GO:0000243 ... P40018 30879786
    486335 6j6q:u (3.7) BS01 rna ? GO:0000243 ... Q12330 30879786
    486336 6j6q:v (3.7) BS01 rna ? GO:0000349 ... Q04048 30879786
    486337 6j6q:w (3.7) BS01 rna ? GO:0000243 ... P54999 30879786
    486338 6j6q:x (3.7) BS01 rna ? GO:0000243 ... P40204 30879786
    486339 6j6q:y (3.7) BS01 rna ? GO:0000243 ... P43321 30879786
    486340 6j6q:z (3.7) BS01 rna ? GO:0000243 ... Q02260 30879786
    486341 6j6t:A (2.36) BS01 ZN 3.5.1.98 N/A Q8GXJ1 32878973
    486342 6j6t:A (2.36) BS02 K 3.5.1.98 N/A Q8GXJ1 32878973
    486343 6j6t:B (2.36) BS01 ZN 3.5.1.98 N/A Q8GXJ1 32878973
    486344 6j6t:B (2.36) BS02 K 3.5.1.98 N/A Q8GXJ1 32878973
    486345 6j6t:C (2.36) BS01 ZN 3.5.1.98 N/A Q8GXJ1 32878973
    486346 6j6t:C (2.36) BS02 K 3.5.1.98 N/A Q8GXJ1 32878973
    486347 6j6t:D (2.36) BS01 ZN 3.5.1.98 N/A Q8GXJ1 32878973
    486348 6j6t:D (2.36) BS02 K 3.5.1.98 N/A Q8GXJ1 32878973
    486349 6j6x:B (2.962) BS01 MG 2.5.1.60 GO:0003824 ... P53611 N/A
    486350 6j72:A (2.2) BS01 GTP ? GO:0005525 ... I7FE16 31467269 MOAD: Kd=0.74uM
    486351 6j72:A (2.2) BS02 MG ? GO:0005525 ... I7FE16 31467269
    486352 6j74:B (3.212) BS01 ZN 2.5.1.60 GO:0003824 ... P53611 N/A
    486353 6j76:A (2.368) BS01 NAP N/A GO:0016491 ... N/A 32087198
    486354 6j76:B (2.368) BS01 NAP N/A GO:0016491 ... N/A 32087198
    486355 6j79:A (3.331) BS01 FAD 1.14.14.18
    1.6.2.4
    GO:0003958 ... P00388
    P06762
    30883732
    486356 6j79:A (3.331) BS02 FMN 1.14.14.18
    1.6.2.4
    GO:0003958 ... P00388
    P06762
    30883732
    486357 6j79:A (3.331) BS03 HEM 1.14.14.18
    1.6.2.4
    GO:0003958 ... P00388
    P06762
    30883732
    486358 6j79:B (3.331) BS01 FAD 1.14.14.18
    1.6.2.4
    GO:0003958 ... P00388
    P06762
    30883732
    486359 6j79:B (3.331) BS02 FMN 1.14.14.18
    1.6.2.4
    GO:0003958 ... P00388
    P06762
    30883732
    486360 6j79:B (3.331) BS03 HEM 1.14.14.18
    1.6.2.4
    GO:0003958 ... P00388
    P06762
    30883732
    486361 6j7a:A (3.269) BS01 HEM 1.14.14.18
    1.6.2.4
    GO:0003958 ... P00388
    P06762
    30883732
    486362 6j7a:A (3.269) BS02 FAD 1.14.14.18
    1.6.2.4
    GO:0003958 ... P00388
    P06762
    30883732
    486363 6j7a:A (3.269) BS03 FMN 1.14.14.18
    1.6.2.4
    GO:0003958 ... P00388
    P06762
    30883732
    486364 6j7a:B (3.269) BS01 HEM 1.14.14.18
    1.6.2.4
    GO:0003958 ... P00388
    P06762
    30883732
    486365 6j7a:B (3.269) BS02 FAD 1.14.14.18
    1.6.2.4
    GO:0003958 ... P00388
    P06762
    30883732
    486366 6j7a:B (3.269) BS03 FMN 1.14.14.18
    1.6.2.4
    GO:0003958 ... P00388
    P06762
    30883732
    486367 6j7b:A (1.618) BS01 BJL 3.4.17.17 GO:0005737 ... Q7L8A9 31171830
    486368 6j7c:A (2.7) BS01 PRO ? GO:0003824 ... H3ZMH5 30773259
    486369 6j7e:A (2.4) BS01 AGS ? GO:0005524 ... G3XCV0 31268665
    486370 6j7e:A (2.4) BS02 MG ? GO:0005524 ... G3XCV0 31268665
    486371 6j7f:B (2.883) BS01 FAR 2.5.1.60 GO:0003824 ... P53611 N/A
    486372 6j7f:B (2.883) BS02 GER 2.5.1.60 GO:0003824 ... P53611 N/A
    486373 6j7i:A (3.3) BS01 HEM 1.14.14.18
    1.6.2.4
    GO:0003958 ... P00388
    P06762
    30883732
    486374 6j7i:A (3.3) BS02 FAD 1.14.14.18
    1.6.2.4
    GO:0003958 ... P00388
    P06762
    30883732
    486375 6j7i:A (3.3) BS03 FMN 1.14.14.18
    1.6.2.4
    GO:0003958 ... P00388
    P06762
    30883732
    486376 6j7i:B (3.3) BS01 HEM 1.14.14.18
    1.6.2.4
    GO:0003958 ... P00388
    P06762
    30883732
    486377 6j7i:B (3.3) BS02 FAD 1.14.14.18
    1.6.2.4
    GO:0003958 ... P00388
    P06762
    30883732
    486378 6j7i:B (3.3) BS03 FMN 1.14.14.18
    1.6.2.4
    GO:0003958 ... P00388
    P06762
    30883732
    486379 6j7k:A (2.15) BS01 TRH 2.4.1.- GO:0016757 ... Q9HZZ1 31010899
    486380 6j7l:A (1.851) BS01 TYD 2.4.1.- GO:0016757 ... Q9HZZ1 31010899
    486381 6j7m:A (2.301) BS01 TYD 2.4.1.- GO:0016757 ... Q9HZZ1 31010899
    486382 6j7m:C (2.301) BS01 TYD 2.4.1.- GO:0016757 ... Q9HZZ1 31010899
    486383 6j7n:A (2.294) BS01 MG ? GO:0000166 ... P96356 32382148
    486384 6j7n:A (2.294) BS02 MG ? GO:0000166 ... P96356 32382148
    486385 6j7n:A (2.294) BS03 MG ? GO:0000166 ... P96356 32382148
    486386 6j7n:A (2.294) BS04 MG ? GO:0000166 ... P96356 32382148
    486387 6j7n:A (2.294) BS05 MG ? GO:0000166 ... P96356 32382148
    486388 6j7n:A (2.294) BS06 MG ? GO:0000166 ... P96356 32382148
    486389 6j7n:A (2.294) BS07 MG ? GO:0000166 ... P96356 32382148
    486390 6j7o:A (1.9) BS01 MG ? GO:0000166 ... P96356 32382148
    486391 6j7o:A (1.9) BS02 MG ? GO:0000166 ... P96356 32382148
    486392 6j7o:A (1.9) BS03 MG ? GO:0000166 ... P96356 32382148
    486393 6j7o:A (1.9) BS04 MG ? GO:0000166 ... P96356 32382148
    486394 6j7o:A (1.9) BS05 MG ? GO:0000166 ... P96356 32382148
    486395 6j7o:A (1.9) BS06 MG ? GO:0000166 ... P96356 32382148
    486396 6j7o:A (1.9) BS07 MG ? GO:0000166 ... P96356 32382148
    486397 6j7o:A (1.9) BS08 MG ? GO:0000166 ... P96356 32382148
    486398 6j7p:A (2.629) BS01 MG ? GO:0000166 ... P96356 32382148
    486399 6j7q:A (1.85) BS01 MG ? GO:0000166 ... P96356 32382148
    486400 6j7q:A (1.85) BS02 MG ? GO:0000166 ... P96356 32382148

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).