SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    486401 6j7q:A (1.85) BS03 CA ? GO:0000166 ... P96356 32382148
    486402 6j7q:A (1.85) BS04 CA ? GO:0000166 ... P96356 32382148
    486403 6j7q:A (1.85) BS05 CA ? GO:0000166 ... P96356 32382148
    486404 6j7r:A (2.299) BS01 MG ? GO:0000166 ... P96356 32382148
    486405 6j7r:A (2.299) BS02 MG ? GO:0000166 ... P96356 32382148
    486406 6j7r:A (2.299) BS03 MG ? GO:0000166 ... P96356 32382148
    486407 6j7r:A (2.299) BS04 MG ? GO:0000166 ... P96356 32382148
    486408 6j7r:A (2.299) BS05 MG ? GO:0000166 ... P96356 32382148
    486409 6j7r:A (2.299) BS06 MG ? GO:0000166 ... P96356 32382148
    486410 6j7r:A (2.299) BS07 MG ? GO:0000166 ... P96356 32382148
    486411 6j7r:A (2.299) BS08 MG ? GO:0000166 ... P96356 32382148
    486412 6j7r:A (2.299) BS09 MG ? GO:0000166 ... P96356 32382148
    486413 6j7r:A (2.299) BS10 MG ? GO:0000166 ... P96356 32382148
    486414 6j7r:A (2.299) BS11 MG ? GO:0000166 ... P96356 32382148
    486415 6j7s:A (2.102) BS01 MG ? GO:0000166 ... P96356 32382148
    486416 6j7s:A (2.102) BS02 MG ? GO:0000166 ... P96356 32382148
    486417 6j7s:A (2.102) BS03 MG ? GO:0000166 ... P96356 32382148
    486418 6j7s:A (2.102) BS04 MG ? GO:0000166 ... P96356 32382148
    486419 6j7s:A (2.102) BS05 MG ? GO:0000166 ... P96356 32382148
    486420 6j7t:A (1.903) BS01 MG ? GO:0000166 ... P96356 32382148
    486421 6j7t:A (1.903) BS02 MG ? GO:0000166 ... P96356 32382148
    486422 6j7t:A (1.903) BS03 MG ? GO:0000166 ... P96356 32382148
    486423 6j7t:A (1.903) BS04 MG ? GO:0000166 ... P96356 32382148
    486424 6j7t:A (1.903) BS05 MG ? GO:0000166 ... P96356 32382148
    486425 6j7t:A (1.903) BS06 MG ? GO:0000166 ... P96356 32382148
    486426 6j7t:A (1.903) BS07 MG ? GO:0000166 ... P96356 32382148
    486427 6j7t:A (1.903) BS08 MG ? GO:0000166 ... P96356 32382148
    486428 6j7t:A (1.903) BS09 MG ? GO:0000166 ... P96356 32382148
    486429 6j7u:A (2.302) BS01 NDP 1.2.4.4 GO:0000166 ... D6NKF4 31202883
    486430 6j7u:B (2.302) BS01 NDP 1.2.4.4 GO:0000166 ... D6NKF4 31202883
    486431 6j7u:C (2.302) BS01 NDP 1.2.4.4 GO:0000166 ... D6NKF4 31202883
    486432 6j7u:D (2.302) BS01 NDP 1.2.4.4 GO:0000166 ... D6NKF4 31202883
    486433 6j7x:A (2.75) BS01 GRG ? GO:0008318 ... Q7Z6K3 N/A
    486434 6j7x:B (2.75) BS01 GRG 2.5.1.60 GO:0003824 ... P53611 N/A
    486435 6j7y:A (2.203) BS01 dna 3.1.15.- GO:0000175 ... Q9Y3B8 30926754
    486436 6j7y:B (2.203) BS01 dna 3.1.15.- GO:0000175 ... Q9Y3B8 30926754
    486437 6j7y:B (2.203) BS02 MG 3.1.15.- GO:0000175 ... Q9Y3B8 30926754
    486438 6j7z:A (2.005) BS01 rna 3.1.15.- GO:0000175 ... Q9Y3B8 30926754
    486439 6j7z:B (2.005) BS01 rna 3.1.15.- GO:0000175 ... Q9Y3B8 30926754
    486440 6j7z:B (2.005) BS02 MG 3.1.15.- GO:0000175 ... Q9Y3B8 30926754
    486441 6j80:A (1.812) BS01 dna 3.1.15.- GO:0000175 ... Q9Y3B8 30926754
    486442 6j80:B (1.812) BS01 dna 3.1.15.- GO:0000175 ... Q9Y3B8 30926754
    486443 6j80:B (1.812) BS02 MG 3.1.15.- GO:0000175 ... Q9Y3B8 30926754
    486444 6j81:A (1.8) BS01 B8X ? GO:0008289 ... Q9Y5P4 N/A
    486445 6j82:A (2.202) BS01 HEM ? GO:0004497 ... A0A077KEB8 31636430
    486446 6j83:A (1.9) BS01 HEM ? GO:0004497 ... A0A077KEB8 31636430
    486447 6j83:A (1.9) BS02 B9R ? GO:0004497 ... A0A077KEB8 31636430
    486448 6j84:A (2.0) BS01 HEM ? GO:0004497 ... A0A077KEB8 31636430
    486449 6j84:A (2.0) BS02 B9U ? GO:0004497 ... A0A077KEB8 31636430
    486450 6j85:A (2.2) BS01 HEM ? GO:0004497 ... A0A1M4Y7D5 31636430
    486451 6j85:B (2.2) BS01 HEM ? GO:0004497 ... A0A1M4Y7D5 31636430
    486452 6j86:A (2.6) BS01 HEM ? GO:0004497 ... A0A1M4Y7D5 31636430
    486453 6j86:A (2.6) BS02 B9L ? GO:0004497 ... A0A1M4Y7D5 31636430
    486454 6j86:B (2.6) BS01 HEM ? GO:0004497 ... A0A1M4Y7D5 31636430
    486455 6j86:B (2.6) BS02 B9L ? GO:0004497 ... A0A1M4Y7D5 31636430
    486456 6j87:A (2.3) BS01 HEM ? GO:0004497 ... A0A1M4Y7D5 31636430
    486457 6j87:A (2.3) BS02 NO ? GO:0004497 ... A0A1M4Y7D5 31636430
    486458 6j87:A (2.3) BS03 B9L ? GO:0004497 ... A0A1M4Y7D5 31636430
    486459 6j87:B (2.3) BS01 HEM ? GO:0004497 ... A0A1M4Y7D5 31636430
    486460 6j87:B (2.3) BS02 NO ? GO:0004497 ... A0A1M4Y7D5 31636430
    486461 6j87:B (2.3) BS03 B9L ? GO:0004497 ... A0A1M4Y7D5 31636430
    486462 6j88:A (2.35) BS01 HEM ? GO:0004497 ... A0A1M4Y7D5 31636430
    486463 6j88:A (2.35) BS02 B9O ? GO:0004497 ... A0A1M4Y7D5 31636430
    486464 6j88:B (2.35) BS01 HEM ? GO:0004497 ... A0A1M4Y7D5 31636430
    486465 6j88:B (2.35) BS02 B9O ? GO:0004497 ... A0A1M4Y7D5 31636430
    486466 6j8e:A (3.0) BS01 peptide ? GO:0001518 ... Q99250 30765605
    486467 6j8e:A (3.0) BS02 9Z9 ? GO:0001518 ... Q99250 30765605
    486468 6j8e:A (3.0) BS03 NA ? GO:0001518 ... Q99250 30765605
    486469 6j8f:B (2.283) BS01 peptide 3.4.17.17 GO:0005737 ... Q7L8A9 31171830
    486470 6j8f:B (2.283) BS02 peptide 3.4.17.17 GO:0005737 ... Q7L8A9 31171830
    486471 6j8g:A (3.2) BS01 9SL ? GO:0001518 ... Q15858 30765606
    486472 6j8h:A (3.2) BS01 9SL ? GO:0001518 ... Q15858 30765606
    486473 6j8i:A (3.2) BS01 9SR ? GO:0001518 ... Q15858 30765606 BindingDB: IC50=6nM
    486474 6j8j:A (3.2) BS01 9SR ? GO:0001518 ... Q15858 30765606 BindingDB: IC50=6nM
    486475 6j8m:A (1.9) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 31274413
    486476 6j8m:A (1.9) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 31274413
    486477 6j8m:A (1.9) BS03 CU 7.1.1.9 GO:0004129 ... P00396 31274413
    486478 6j8m:A (1.9) BS04 MG 7.1.1.9 GO:0004129 ... P00396 31274413
    486479 6j8m:B (1.9) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 31274413
    486480 6j8m:B (1.9) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 31274413
    486481 6j8m:C (1.9) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 31274413
    486482 6j8m:F (1.9) BS01 ZN ? GO:0005740 ... P00428 31274413
    486483 6j8m:J (1.9) BS01 DMU ? GO:0006123 ... P07470 31274413
    486484 6j8m:M (1.9) BS01 DMU ? GO:0006123 ... P10175 31274413
    486485 6j8m:N (1.9) BS01 HEA 7.1.1.9 GO:0004129 ... P00396 31274413
    486486 6j8m:N (1.9) BS02 HEA 7.1.1.9 GO:0004129 ... P00396 31274413
    486487 6j8m:N (1.9) BS03 CU 7.1.1.9 GO:0004129 ... P00396 31274413
    486488 6j8m:N (1.9) BS04 MG 7.1.1.9 GO:0004129 ... P00396 31274413
    486489 6j8m:O (1.9) BS01 HEA 7.1.1.9 GO:0004129 ... P68530 31274413
    486490 6j8m:O (1.9) BS02 CUA 7.1.1.9 GO:0004129 ... P68530 31274413
    486491 6j8m:P (1.9) BS01 DMU 7.1.1.9 GO:0004129 ... P00415 31274413
    486492 6j8m:S (1.9) BS01 ZN ? GO:0005740 ... P00428 31274413
    486493 6j8m:W (1.9) BS01 DMU ? GO:0006123 ... P07470 31274413
    486494 6j8m:Z (1.9) BS01 DMU ? GO:0006123 ... P10175 31274413
    486495 6j8n:B (1.95) BS01 peptide 3.4.17.17 GO:0005737 ... Q7L8A9 31171830
    486496 6j8n:D (1.95) BS01 peptide 3.4.17.17 GO:0005737 ... Q7L8A9 31171830
    486497 6j8o:B (1.855) BS01 peptide 3.4.17.17 GO:0005737 ... Q7L8A9 N/A
    486498 6j8q:A (1.787) BS01 BHU 3.5.2.6 GO:0008800 ... Q9F663 31269398
    486499 6j8q:B (1.787) BS01 BHU 3.5.2.6 GO:0008800 ... Q9F663 31269398
    486500 6j8q:C (1.787) BS01 BHU 3.5.2.6 GO:0008800 ... Q9F663 31269398
    486501 6j8q:D (1.787) BS01 BHU 3.5.2.6 GO:0008800 ... Q9F663 31269398
    486502 6j8r:A (1.575) BS01 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 31269398
    486503 6j8r:A (1.575) BS02 ZN 3.5.2.6 GO:0016787 ... Q9K2N0 31269398
    486504 6j8r:A (1.575) BS03 BHU 3.5.2.6 GO:0016787 ... Q9K2N0 31269398 MOAD: Ki=0.76uM
    486505 6j8v:D (2.23) BS01 FAR ? GO:0003677 ... A0A010
    P39476
    30837154
    486506 6j8w:D (2.35) BS01 C0X ? GO:0003677 ... A0A010
    P39476
    30837154
    486507 6j8w:D (2.35) BS02 C0X ? GO:0003677 ... A0A010
    P39476
    30837154
    486508 6j8y:C (2.4) BS01 peptide 3.1.11.2 GO:0000077 ... O60671 31776186
    486509 6j90:A (2.2) BS01 ATP 5.6.2.2 GO:0003677 ... P0A2I4 N/A
    486510 6j91:B (3.5) BS01 peptide 3.4.17.17 GO:0005737 ... Q7L8A9 31171830
    486511 6j92:A (2.421) BS01 ZN 4.1.1.5 GO:0016831 ... P05361 N/A
    486512 6j92:B (2.421) BS01 ZN 4.1.1.5 GO:0016831 ... P05361 N/A
    486513 6j94:A (2.401) BS01 HEM 1.14.-.- GO:0004497 ... Q93VK5 32513704
    486514 6j94:B (2.401) BS01 HEM 1.14.-.- GO:0004497 ... Q93VK5 32513704
    486515 6j95:A (2.002) BS01 HEM 1.14.-.- GO:0004497 ... Q93VK5 32513704
    486516 6j95:A (2.002) BS02 RET 1.14.-.- GO:0004497 ... Q93VK5 32513704 MOAD: Kd=0.23uM
    486517 6j98:A (1.56) BS01 ZN ? GO:0046872 ... A0A0E3CPJ0 N/A
    486518 6j98:A (1.56) BS02 ZN ? GO:0046872 ... A0A0E3CPJ0 N/A
    486519 6j99:A (4.1) BS01 dna ? GO:0000786 ... A0A310TTQ1 30770869
    486520 6j99:A (4.1) BS02 dna ? GO:0000786 ... A0A310TTQ1 30770869
    486521 6j99:B (4.1) BS01 dna ? GO:0000786 ... P62799 30770869
    486522 6j99:B (4.1) BS02 dna ? GO:0000786 ... P62799 30770869
    486523 6j99:C (4.1) BS01 dna ? GO:0000786 ... Q6AZJ8 30770869
    486524 6j99:C (4.1) BS02 dna ? GO:0000786 ... Q6AZJ8 30770869
    486525 6j99:D (4.1) BS01 dna ? GO:0000786 ... P02281 30770869
    486526 6j99:D (4.1) BS02 dna ? GO:0000786 ... P02281 30770869
    486527 6j99:E (4.1) BS01 dna ? GO:0000786 ... A0A310TTQ1 30770869
    486528 6j99:E (4.1) BS02 dna ? GO:0000786 ... A0A310TTQ1 30770869
    486529 6j99:F (4.1) BS01 dna ? GO:0000786 ... P62799 30770869
    486530 6j99:F (4.1) BS02 dna ? GO:0000786 ... P62799 30770869
    486531 6j99:G (4.1) BS01 dna ? GO:0000786 ... Q6AZJ8 30770869
    486532 6j99:G (4.1) BS02 dna ? GO:0000786 ... Q6AZJ8 30770869
    486533 6j99:H (4.1) BS01 dna ? GO:0000786 ... P02281 30770869
    486534 6j99:H (4.1) BS02 dna ? GO:0000786 ... P02281 30770869
    486535 6j99:K (4.1) BS01 SAH 2.1.1.360 GO:0031151 ... Q8TEK3 30770869 BindingDB: Ki=160nM, IC50=600nM, Kd=150nM
    486536 6j9a:A (2.915) BS01 dna ? GO:0003677 ... Q8W4L5 30962525
    486537 6j9a:A (2.915) BS02 dna ? GO:0003677 ... Q8W4L5 30962525
    486538 6j9b:A (1.9) BS01 dna ? GO:0003677 ... Q9LW31 30962525
    486539 6j9b:A (1.9) BS02 dna ? GO:0003677 ... Q9LW31 30962525
    486540 6j9b:D (1.9) BS01 dna ? GO:0003677 ... Q9LW31 30962525
    486541 6j9b:D (1.9) BS02 dna ? GO:0003677 ... Q9LW31 30962525
    486542 6j9c:A (3.102) BS01 dna ? GO:0003677 ... Q1PFR7 30962525
    486543 6j9c:A (3.102) BS02 dna ? GO:0003677 ... Q1PFR7 30962525
    486544 6j9c:D (3.102) BS01 dna ? GO:0003677 ... Q1PFR7 30962525
    486545 6j9c:D (3.102) BS02 dna ? GO:0003677 ... Q1PFR7 30962525
    486546 6j9e:C (3.41) BS01 dna 2.7.7.6 GO:0000428 ... B2SQQ1 31296855
    486547 6j9e:C (3.41) BS02 dna 2.7.7.6 GO:0000428 ... B2SQQ1 31296855
    486548 6j9e:C (3.41) BS03 rna 2.7.7.6 GO:0000428 ... B2SQQ1 31296855
    486549 6j9e:D (3.41) BS01 dna 2.7.7.6 GO:0000287 ... B2SQQ2 31296855
    486550 6j9e:D (3.41) BS02 dna 2.7.7.6 GO:0000287 ... B2SQQ2 31296855
    486551 6j9e:D (3.41) BS03 rna 2.7.7.6 GO:0000287 ... B2SQQ2 31296855
    486552 6j9e:D (3.41) BS04 MG 2.7.7.6 GO:0000287 ... B2SQQ2 31296855
    486553 6j9e:D (3.41) BS05 ZN 2.7.7.6 GO:0000287 ... B2SQQ2 31296855
    486554 6j9f:C (3.95) BS01 dna 2.7.7.6 GO:0000428 ... Q2NZX8 31296855
    486555 6j9f:C (3.95) BS02 dna 2.7.7.6 GO:0000428 ... Q2NZX8 31296855
    486556 6j9f:C (3.95) BS03 rna 2.7.7.6 GO:0000428 ... Q2NZX8 31296855
    486557 6j9f:D (3.95) BS01 dna 2.7.7.6 GO:0000287 ... B2SQQ2 31296855
    486558 6j9f:D (3.95) BS02 dna 2.7.7.6 GO:0000287 ... B2SQQ2 31296855
    486559 6j9f:D (3.95) BS03 rna 2.7.7.6 GO:0000287 ... B2SQQ2 31296855
    486560 6j9f:D (3.95) BS04 MG 2.7.7.6 GO:0000287 ... B2SQQ2 31296855
    486561 6j9f:D (3.95) BS05 ZN 2.7.7.6 GO:0000287 ... B2SQQ2 31296855
    486562 6j9f:D (3.95) BS06 ZN 2.7.7.6 GO:0000287 ... B2SQQ2 31296855
    486563 6j9h:B (2.31) BS01 peptide 3.4.17.17 GO:0005737 ... Q7L8A9 31171830
    486564 6j9h:D (2.31) BS01 peptide 3.4.17.17 GO:0005737 ... Q7L8A9 31171830
    486565 6j9j:A (1.78) BS01 peptide 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 32699416
    486566 6j9j:A (1.78) BS02 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 32699416
    486567 6j9j:A (1.78) BS03 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 32699416
    486568 6j9j:A (1.78) BS04 ZN 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 32699416
    486569 6j9j:A (1.78) BS05 SAH 2.1.1.-
    2.1.1.359
    GO:0005634 ... Q9BYW2 32699416
    486570 6j9l:A (1.78) BS01 peptide ? N/A A0A425B3G2 30850331
    486571 6j9l:B (1.78) BS01 peptide ? N/A A0A425B3G2 30850331
    486572 6j9m:B (2.394) BS01 peptide ? N/A A0A425B3G2 30850331
    486573 6j9m:E (2.394) BS01 peptide ? N/A A0A425B3G2 30850331
    486574 6j9q:A (2.7) BS01 ANP 2.7.1.30 GO:0004370 ... D3KVM3 N/A
    486575 6j9q:B (2.7) BS01 ANP 2.7.1.30 GO:0004370 ... D3KVM3 N/A
    486576 6j9q:C (2.7) BS01 ANP 2.7.1.30 GO:0004370 ... D3KVM3 N/A
    486577 6j9q:D (2.7) BS01 ANP 2.7.1.30 GO:0004370 ... D3KVM3 N/A
    486578 6j9t:B (2.7) BS01 FBP N/A GO:0003824 ... N/A N/A
    486579 6j9t:C (2.7) BS01 FBP N/A GO:0003824 ... N/A N/A
    486580 6j9t:D (2.7) BS01 FBP N/A GO:0003824 ... N/A N/A
    486581 6j9t:E (2.7) BS01 FBP N/A GO:0003824 ... N/A N/A
    486582 6j9t:F (2.7) BS01 FBP N/A GO:0003824 ... N/A N/A
    486583 6j9u:A (2.79) BS01 PYR N/A GO:0003824 ... N/A N/A
    486584 6j9u:C (2.79) BS01 PYR N/A GO:0003824 ... N/A N/A
    486585 6j9u:D (2.79) BS01 PYR N/A GO:0003824 ... N/A N/A
    486586 6j9v:A (2.4) BS01 ADP 2.7.1.30 GO:0004370 ... D3KVM3 N/A
    486587 6j9v:B (2.4) BS01 ADP 2.7.1.30 GO:0004370 ... D3KVM3 N/A
    486588 6j9w:A (1.8) BS01 GLC ? N/A Q5SLD7 31608555
    486589 6j9w:A (1.8) BS02 GLC ? N/A Q5SLD7 31608555
    486590 6j9y:A (1.63) BS01 GLC ? N/A Q5SLD7 31608555
    486591 6j9y:A (1.63) BS02 GLC ? N/A Q5SLD7 31608555
    486592 6j9y:A (1.63) BS03 CO3 ? N/A Q5SLD7 31608555
    486593 6jad:A (1.9) BS01 Z9N ? N/A Q5SLD7 31608555
    486594 6jad:A (1.9) BS02 GLC ? N/A Q5SLD7 31608555
    486595 6jaf:A (2.9) BS01 POP 2.7.1.30 GO:0004370 ... D3KVM3 N/A
    486596 6jag:A (1.85) BS01 GLC ? N/A Q5SLD7 31608555
    486597 6jag:A (1.85) BS02 FRU ? N/A Q5SLD7 31608555
    486598 6jah:A (1.63) BS01 GLC ? N/A Q5SLD7 31608555
    486599 6jah:A (1.63) BS02 BA9 ? N/A Q5SLD7 31608555
    486600 6jah:A (1.63) BS03 BA6 ? N/A Q5SLD7 31608555

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).