SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    487601 6jf5:A (2.0) BS02 K2U 3.5.1.88 GO:0006412 ... A0A098SKQ8 N/A
    487602 6jf5:B (2.0) BS01 ZN 3.5.1.88 GO:0006412 ... A0A098SKQ8 N/A
    487603 6jf5:B (2.0) BS02 K2U 3.5.1.88 GO:0006412 ... A0A098SKQ8 N/A
    487604 6jf6:A (2.35) BS01 ZN N/A GO:0042586 ... N/A N/A
    487605 6jf6:B (2.35) BS01 ZN N/A GO:0042586 ... N/A N/A
    487606 6jf6:C (2.35) BS01 peptide N/A GO:0042586 ... N/A N/A
    487607 6jf6:C (2.35) BS02 ZN N/A GO:0042586 ... N/A N/A
    487608 6jf6:D (2.35) BS01 ZN N/A GO:0042586 ... N/A N/A
    487609 6jf7:A (2.0) BS01 ZN N/A GO:0042586 ... N/A N/A
    487610 6jf7:A (2.0) BS02 K3U N/A GO:0042586 ... N/A N/A
    487611 6jf7:B (2.0) BS01 ZN N/A GO:0042586 ... N/A N/A
    487612 6jf7:B (2.0) BS02 K3U N/A GO:0042586 ... N/A N/A
    487613 6jf8:A (1.7) BS01 ZN N/A GO:0042586 ... N/A N/A
    487614 6jf8:A (1.7) BS02 LHY N/A GO:0042586 ... N/A N/A
    487615 6jf8:B (1.7) BS01 ZN N/A GO:0042586 ... N/A N/A
    487616 6jf8:B (1.7) BS02 LHY N/A GO:0042586 ... N/A N/A
    487617 6jf8:C (1.7) BS01 ZN N/A GO:0042586 ... N/A N/A
    487618 6jf8:C (1.7) BS02 LHY N/A GO:0042586 ... N/A N/A
    487619 6jf8:D (1.7) BS01 ZN N/A GO:0042586 ... N/A N/A
    487620 6jf8:D (1.7) BS02 LHY N/A GO:0042586 ... N/A N/A
    487621 6jfa:A (1.93) BS01 peptide 3.5.1.88 GO:0006412 ... A0A071LDC0 N/A
    487622 6jfb:A (2.12) BS01 SER 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 N/A
    487623 6jfb:B (2.12) BS01 SER 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 N/A
    487624 6jfb:C (2.12) BS01 SER 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 N/A
    487625 6jfb:D (2.12) BS01 SER 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 N/A
    487626 6jfc:A (2.04) BS01 BB2 3.5.1.88 GO:0006412 ... A0A071LDC0 N/A
    487627 6jfc:B (2.04) BS01 BB2 3.5.1.88 GO:0006412 ... A0A071LDC0 N/A
    487628 6jfd:C (2.4) BS01 K1U 3.5.1.88 GO:0006412 ... A0A071LDC0 N/A
    487629 6jfe:B (2.1) BS01 K3U 3.5.1.88 GO:0006412 ... A0A071LDC0 N/A
    487630 6jff:B (2.1) BS01 K3U 3.5.1.88 GO:0006412 ... A0A071LDC0 N/A
    487631 6jfg:A (2.6) BS01 K1U 3.5.1.88 GO:0006412 ... P68826 N/A
    487632 6jfj:A (1.932) BS01 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    487633 6jfj:A (1.932) BS02 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    487634 6jfj:A (1.932) BS03 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    487635 6jfj:A (1.932) BS04 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    487636 6jfj:A (1.932) BS05 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    487637 6jfj:A (1.932) BS06 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    487638 6jfj:A (1.932) BS07 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    487639 6jfj:A (1.932) BS08 CA 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    487640 6jfk:A (1.997) BS01 GDP 3.6.5.- GO:0003924 ... O95140 31664033
    487641 6jfm:A (2.09) BS01 CA 3.6.5.- GO:0003924 ... O95140 31664033
    487642 6jfm:A (2.09) BS02 CA 3.6.5.- GO:0003924 ... O95140 31664033
    487643 6jfm:B (2.09) BS01 CA 3.6.5.- GO:0003924 ... O95140 31664033
    487644 6jfn:B (2.04) BS01 LHY 3.5.1.88 GO:0006412 ... A0A071LDC0 N/A
    487645 6jfo:A (1.6) BS01 peptide 3.5.1.88 GO:0006412 ... P68826 N/A
    487646 6jfo:A (1.6) BS02 MG 3.5.1.88 GO:0006412 ... P68826 N/A
    487647 6jfp:A (2.7) BS01 BGC 3.2.1.21 GO:0004553 ... A0A5B9BHU3 32338906
    487648 6jfq:A (2.2) BS01 K2U 3.5.1.88 GO:0006412 ... P68826 N/A
    487649 6jfr:A (2.4) BS01 K3U 3.5.1.88 GO:0006412 ... P68826 N/A
    487650 6jfs:A (2.25) BS01 LHY 3.5.1.88 GO:0006412 ... P68826 N/A
    487651 6jfu:A (3.2) BS01 rna N/A GO:0003676 ... N/A 31668930
    487652 6jfu:A (3.2) BS02 dna N/A GO:0003676 ... N/A 31668930
    487653 6jfu:A (3.2) BS03 dna N/A GO:0003676 ... N/A 31668930
    487654 6jfx:A (1.981) BS01 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    487655 6jfx:A (1.981) BS02 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    487656 6jfx:A (1.981) BS03 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    487657 6jfx:A (1.981) BS04 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    487658 6jfx:A (1.981) BS05 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    487659 6jfx:A (1.981) BS06 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    487660 6jfx:A (1.981) BS07 CA 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    487661 6jg1:A (1.78) BS01 SGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487662 6jg1:A (1.78) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487663 6jg2:A (2.0) BS01 BV6 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487664 6jg3:A (6.1) BS01 ZN N/A GO:0005216 ... N/A 31792195
    487665 6jg3:B (6.1) BS01 ZN N/A GO:0005216 ... N/A 31792195
    487666 6jg3:C (6.1) BS01 ZN N/A GO:0005216 ... N/A 31792195
    487667 6jg3:D (6.1) BS01 ZN N/A GO:0005216 ... N/A 31792195
    487668 6jg6:A (1.55) BS01 U1Y 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487669 6jg6:A (1.55) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487670 6jg7:A (2.16) BS01 U2A 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487671 6jg7:A (2.16) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487672 6jg8:A (2.097) BS01 dna ? GO:0098689 ... O64094 31149347
    487673 6jg8:A (2.097) BS02 dna ? GO:0098689 ... O64094 31149347
    487674 6jg8:B (2.097) BS01 dna ? GO:0098689 ... O64094 31149347
    487675 6jg8:B (2.097) BS02 dna ? GO:0098689 ... O64094 31149347
    487676 6jg9:A (1.998) BS01 peptide ? GO:0098689 ... O64094 31149347
    487677 6jg9:B (1.998) BS01 peptide ? GO:0098689 ... O64094 31149347
    487678 6jga:A (1.47) BS01 6BV 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487679 6jgb:A (1.47) BS01 U1Y 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487680 6jgb:A (1.47) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487681 6jgc:A (2.36) BS01 GLC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487682 6jgc:A (2.36) BS02 GLC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487683 6jgd:A (2.13) BS01 U1Y 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487684 6jgd:A (2.13) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487685 6jge:A (1.92) BS01 U2A 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487686 6jge:A (1.92) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487687 6jgg:A (1.9) BS01 U2A 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487688 6jgg:A (1.9) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487689 6jgj:A (0.78) BS01 MG ? GO:0006091 ... P42212 31098020
    487690 6jgk:A (1.66) BS01 SGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487691 6jgk:A (1.66) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487692 6jgl:A (1.92) BS01 U2A 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487693 6jgl:A (1.92) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487694 6jgm:A (2.3) BS01 AQG 2.7.11.22 GO:0000082 ... P24941 N/A BindingDB: IC50=400nM
    487695 6jgn:A (1.98) BS01 LAM 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487696 6jgo:A (1.95) BS01 SGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487697 6jgo:A (1.95) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487698 6jgp:A (1.99) BS01 U1Y 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487699 6jgp:A (1.99) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487700 6jgq:A (2.01) BS01 U2A 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487701 6jgq:A (2.01) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487702 6jgr:A (2.25) BS01 LAM 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487703 6jgs:A (2.03) BS01 SGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487704 6jgs:A (2.03) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487705 6jgt:A (1.82) BS01 U1Y 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487706 6jgt:A (1.82) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    487707 6jgw:A (2.8) BS01 dna ? GO:0003677 ... Q93TP7 31548408
    487708 6jgw:A (2.8) BS02 dna ? GO:0003677 ... Q93TP7 31548408
    487709 6jgw:B (2.8) BS01 dna ? GO:0003677 ... Q93TP7 31548408
    487710 6jgw:B (2.8) BS02 dna ? GO:0003677 ... Q93TP7 31548408
    487711 6jgx:A (2.71) BS01 dna ? GO:0003677 ... Q93TP7 31548408
    487712 6jgx:A (2.71) BS02 dna ? GO:0003677 ... Q93TP7 31548408
    487713 6jgx:A (2.71) BS03 CD ? GO:0003677 ... Q93TP7 31548408
    487714 6jgx:A (2.71) BS04 CD ? GO:0003677 ... Q93TP7 31548408
    487715 6jgx:B (2.71) BS01 dna ? GO:0003677 ... Q93TP7 31548408
    487716 6jgx:B (2.71) BS02 dna ? GO:0003677 ... Q93TP7 31548408
    487717 6jgx:B (2.71) BS03 CD ? GO:0003677 ... Q93TP7 31548408
    487718 6jgx:B (2.71) BS04 CD ? GO:0003677 ... Q93TP7 31548408
    487719 6jgz:B (4.6) BS01 ZN N/A GO:0005216 ... N/A 31792195
    487720 6jgz:D (4.6) BS01 ZN N/A GO:0005216 ... N/A 31792195
    487721 6jgz:F (4.6) BS01 ZN N/A GO:0005216 ... N/A 31792195
    487722 6jgz:H (4.6) BS01 ZN N/A GO:0005216 ... N/A 31792195
    487723 6jh5:A (1.54) BS01 CA N/A GO:0004553 ... N/A 32917756
    487724 6jh6:B (4.8) BS01 ATP N/A GO:0005216 ... N/A 31792195
    487725 6jh6:B (4.8) BS02 ZN N/A GO:0005216 ... N/A 31792195
    487726 6jh6:D (4.8) BS01 ATP N/A GO:0005216 ... N/A 31792195
    487727 6jh6:D (4.8) BS02 ZN N/A GO:0005216 ... N/A 31792195
    487728 6jh6:F (4.8) BS01 ATP N/A GO:0005216 ... N/A 31792195
    487729 6jh6:F (4.8) BS02 ZN N/A GO:0005216 ... N/A 31792195
    487730 6jh6:H (4.8) BS01 ATP N/A GO:0005216 ... N/A 31792195
    487731 6jh6:H (4.8) BS02 ZN N/A GO:0005216 ... N/A 31792195
    487732 6jh8:A (2.149) BS01 peptide 3.6.4.- GO:0000287 ... P68135 N/A
    487733 6jh8:A (2.149) BS02 ATP 3.6.4.- GO:0000287 ... P68135 N/A
    487734 6jh8:A (2.149) BS03 CA 3.6.4.- GO:0000287 ... P68135 N/A
    487735 6jh9:A (1.739) BS01 peptide 3.6.4.- GO:0000287 ... P68135 N/A
    487736 6jh9:A (1.739) BS02 ATP 3.6.4.- GO:0000287 ... P68135 N/A
    487737 6jh9:A (1.739) BS03 CA 3.6.4.- GO:0000287 ... P68135 N/A
    487738 6jha:A (1.78) BS01 NDP N/A N/A N/A 31726097
    487739 6jha:B (1.78) BS01 NDP N/A N/A N/A 31726097
    487740 6jhb:A (2.27) BS01 NDP N/A N/A N/A 31726097
    487741 6jhb:B (2.27) BS01 NDP N/A N/A N/A 31726097
    487742 6jhb:B (2.27) BS02 ENO N/A N/A N/A 31726097
    487743 6jhe:A (3.101) BS01 dna ? GO:0003677 ... Q45585 31461489
    487744 6jhe:A (3.101) BS02 dna ? GO:0003677 ... Q45585 31461489
    487745 6jhf:A (1.71) BS01 CA 3.2.1.41 GO:0004553 ... A0A0C5GWS2 32355041
    487746 6jhg:A (1.891) BS01 CA 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    487747 6jhh:A (2.025) BS01 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    487748 6jhh:A (2.025) BS02 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    487749 6jhh:A (2.025) BS03 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    487750 6jhh:A (2.025) BS04 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    487751 6jhh:A (2.025) BS05 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    487752 6jhh:A (2.025) BS06 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    487753 6jhh:A (2.025) BS07 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    487754 6jhh:A (2.025) BS08 CA 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    487755 6jhi:A (2.319) BS01 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    487756 6jhi:A (2.319) BS02 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    487757 6jhi:A (2.319) BS03 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    487758 6jhi:A (2.319) BS04 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    487759 6jhi:A (2.319) BS05 GLC 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    487760 6jhi:A (2.319) BS06 CA 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    487761 6jhi:A (2.319) BS07 CA 3.2.1.41 GO:0004553 ... A0A0C5GWS2 N/A
    487762 6jhj:A (1.69) BS01 CA N/A GO:0004553 ... N/A 32917756
    487763 6jhn:A (4.5) BS01 ZN N/A GO:0005216 ... N/A 31792195
    487764 6jhn:A (4.5) BS02 CA N/A GO:0005216 ... N/A 31792195
    487765 6jhn:A (4.5) BS03 CFF N/A GO:0005216 ... N/A 31792195
    487766 6jhn:C (4.5) BS01 ZN N/A GO:0005216 ... N/A 31792195
    487767 6jhn:C (4.5) BS02 CA N/A GO:0005216 ... N/A 31792195
    487768 6jhn:C (4.5) BS03 CFF N/A GO:0005216 ... N/A 31792195
    487769 6jhn:E (4.5) BS01 ZN N/A GO:0005216 ... N/A 31792195
    487770 6jhn:E (4.5) BS02 CA N/A GO:0005216 ... N/A 31792195
    487771 6jhn:E (4.5) BS03 CFF N/A GO:0005216 ... N/A 31792195
    487772 6jhn:G (4.5) BS01 ZN N/A GO:0005216 ... N/A 31792195
    487773 6jhn:G (4.5) BS02 CA N/A GO:0005216 ... N/A 31792195
    487774 6jhn:G (4.5) BS03 CFF N/A GO:0005216 ... N/A 31792195
    487775 6jhu:A (1.97) BS01 BT5 6.3.4.15 GO:0004077 ... Q4Q6F6 N/A
    487776 6jhx:A (2.2) BS01 BEM ? GO:0042597 ... Q9KWT5 N/A
    487777 6jhx:A (2.2) BS02 BEM ? GO:0042597 ... Q9KWT5 N/A
    487778 6jhx:A (2.2) BS03 MAW ? GO:0042597 ... Q9KWT5 N/A
    487779 6jhx:B (2.2) BS01 BEM ? GO:0042597 ... Q9KWT5 N/A
    487780 6jhx:B (2.2) BS02 BEM ? GO:0042597 ... Q9KWT5 N/A
    487781 6jhx:B (2.2) BS03 MAW ? GO:0042597 ... Q9KWT5 N/A
    487782 6ji0:A (4.2) BS01 ZN N/A GO:0005216 ... N/A 31278385
    487783 6ji0:A (4.2) BS02 ATP N/A GO:0005216 ... N/A 31278385
    487784 6ji0:A (4.2) BS03 CA N/A GO:0005216 ... N/A 31278385
    487785 6ji0:A (4.2) BS04 CFF N/A GO:0005216 ... N/A 31278385
    487786 6ji0:C (4.2) BS01 ZN N/A GO:0005216 ... N/A 31278385
    487787 6ji0:C (4.2) BS02 ATP N/A GO:0005216 ... N/A 31278385
    487788 6ji0:C (4.2) BS03 CA N/A GO:0005216 ... N/A 31278385
    487789 6ji0:C (4.2) BS04 CFF N/A GO:0005216 ... N/A 31278385
    487790 6ji0:E (4.2) BS01 ZN N/A GO:0005216 ... N/A 31278385
    487791 6ji0:E (4.2) BS02 ATP N/A GO:0005216 ... N/A 31278385
    487792 6ji0:E (4.2) BS03 CA N/A GO:0005216 ... N/A 31278385
    487793 6ji0:E (4.2) BS04 CFF N/A GO:0005216 ... N/A 31278385
    487794 6ji0:G (4.2) BS01 ZN N/A GO:0005216 ... N/A 31278385
    487795 6ji0:G (4.2) BS02 ATP N/A GO:0005216 ... N/A 31278385
    487796 6ji0:G (4.2) BS03 CA N/A GO:0005216 ... N/A 31278385
    487797 6ji0:G (4.2) BS04 CFF N/A GO:0005216 ... N/A 31278385
    487798 6ji2:A (3.0) BS01 peptide ? GO:0003746 ... Q9YAV0 31611569
    487799 6ji2:A (3.0) BS02 GTP ? GO:0003746 ... Q9YAV0 31611569
    487800 6ji2:A (3.0) BS03 MG ? GO:0003746 ... Q9YAV0 31611569

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).