SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    48601 1rxs:l (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48602 1rxs:l (2.8) BS02 DUR 2.4.2.3 GO:0003824 ... P12758 15003451
    48603 1rxs:m (2.8) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48604 1rxs:o (2.8) BS01 V7O 2.4.2.3 GO:0003824 ... P12758 15003451
    48605 1rxs:o (2.8) BS02 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48606 1rxt:C (3.0) BS01 CO 2.3.1.-
    2.3.1.97    		 GO:0004379 ... P30419 N/A
    48607 1rxu:A (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48608 1rxu:B (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48609 1rxu:C (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48610 1rxu:D (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48611 1rxu:E (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48612 1rxu:F (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48613 1rxu:G (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48614 1rxu:H (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48615 1rxu:I (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48616 1rxu:J (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48617 1rxu:K (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48618 1rxu:L (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48619 1rxu:M (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48620 1rxu:N (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48621 1rxu:O (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48622 1rxu:P (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48623 1rxu:Q (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48624 1rxu:R (3.1) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48625 1rxv:A (2.5) BS01 dna 3.1.-.- GO:0000287 ... O29975 14718165
    48626 1rxv:B (2.5) BS01 dna 3.1.-.- GO:0000287 ... O29975 14718165
    48627 1rxw:A (2.0) BS01 dna 3.1.-.- GO:0000287 ... O29975 14718165
    48628 1rxw:A (2.0) BS02 dna 3.1.-.- GO:0000287 ... O29975 14718165
    48629 1rxy:A (1.7) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48630 1rxy:B (1.7) BS01 K 2.4.2.3 GO:0003824 ... P12758 15003451
    48631 1rxz:A (2.0) BS01 peptide ? GO:0003677 ... O29912 14718165
    48632 1ry0:A (1.69) BS01 NAP 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64    		 GO:0001523 ... P42330 14979715
    48633 1ry0:A (1.69) BS02 PG2 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64    		 GO:0001523 ... P42330 14979715
    48634 1ry0:B (1.69) BS01 NAP 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64    		 GO:0001523 ... P42330 14979715
    48635 1ry0:B (1.69) BS02 PG2 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64    		 GO:0001523 ... P42330 14979715
    48636 1ry1:B (12.0) BS01 rna ? GO:0006614 ... P09132 14985753
    48637 1ry1:C (12.0) BS01 rna ? GO:0003723 ... P49458 14985753
    48638 1ry1:C (12.0) BS02 rna ? GO:0003723 ... P49458 14985753
    48639 1ry1:D (12.0) BS01 rna ? GO:0005786 ... P37108 14985753
    48640 1ry1:W (12.0) BS01 rna 3.6.5.4 GO:0003924 ... P14576 14985753
    48641 1ry1:W (12.0) BS02 peptide 3.6.5.4 GO:0003924 ... P14576 14985753
    48642 1ry2:A (2.3) BS01 AMP 6.2.1.1 GO:0003987 ... Q01574 14769018
    48643 1ry5:L (2.1) BS01 BCL ? GO:0009772 ... P0C0Y8 15062092
    48644 1ry5:L (2.1) BS02 BCL ? GO:0009772 ... P0C0Y8 15062092
    48645 1ry5:L (2.1) BS03 BCL ? GO:0009772 ... P0C0Y8 15062092
    48646 1ry5:L (2.1) BS04 BPH ? GO:0009772 ... P0C0Y8 15062092
    48647 1ry5:L (2.1) BS05 U10 ? GO:0009772 ... P0C0Y8 15062092
    48648 1ry5:L (2.1) BS06 FE2 ? GO:0009772 ... P0C0Y8 15062092
    48649 1ry5:L (2.1) BS07 BPH ? GO:0009772 ... P0C0Y8 15062092
    48650 1ry5:L (2.1) BS08 U10 ? GO:0009772 ... P0C0Y8 15062092
    48651 1ry5:M (2.1) BS01 BCL ? GO:0009772 ... P0C0Y9 15062092
    48652 1ry5:M (2.1) BS02 BCL ? GO:0009772 ... P0C0Y9 15062092
    48653 1ry5:M (2.1) BS03 BPH ? GO:0009772 ... P0C0Y9 15062092
    48654 1ry5:M (2.1) BS04 FE2 ? GO:0009772 ... P0C0Y9 15062092
    48655 1ry5:M (2.1) BS05 BCL ? GO:0009772 ... P0C0Y9 15062092
    48656 1ry5:M (2.1) BS06 BPH ? GO:0009772 ... P0C0Y9 15062092
    48657 1ry5:M (2.1) BS07 U10 ? GO:0009772 ... P0C0Y9 15062092
    48658 1ry5:M (2.1) BS08 SPO ? GO:0009772 ... P0C0Y9 15062092
    48659 1ry8:A (1.69) BS01 NDP 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64    		 GO:0001523 ... P42330 14979715
    48660 1ry8:A (1.69) BS02 RUT 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64    		 GO:0001523 ... P42330 14979715
    48661 1ry8:B (1.69) BS01 NDP 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64    		 GO:0001523 ... P42330 14979715
    48662 1ry8:B (1.69) BS02 RUT 1.1.1.-
    1.1.1.188
    1.1.1.210
    1.1.1.239
    1.1.1.357
    1.1.1.53
    1.1.1.62
    1.1.1.64    		 GO:0001523 ... P42330 14979715
    48663 1rya:A (1.3) BS01 MG 3.6.1.- GO:0000287 ... P32056 15274914
    48664 1rya:A (1.3) BS02 GDP 3.6.1.- GO:0000287 ... P32056 15274914
    48665 1rya:B (1.3) BS01 MG 3.6.1.- GO:0000287 ... P32056 15274914
    48666 1rya:B (1.3) BS02 GDP 3.6.1.- GO:0000287 ... P32056 15274914
    48667 1ryc:A (1.8) BS01 HEM 1.11.1.5 GO:0004601 ... P00431 8673607
    48668 1ryc:A (1.8) BS02 BZI 1.11.1.5 GO:0004601 ... P00431 8673607
    48669 1ryd:A (2.2) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 N/A
    48670 1ryd:A (2.2) BS02 GLC 1.1.99.28 GO:0000166 ... Q07982 N/A
    48671 1ryd:B (2.2) BS01 GLC 1.1.99.28 GO:0000166 ... Q07982 N/A
    48672 1ryd:B (2.2) BS02 NDP 1.1.99.28 GO:0000166 ... Q07982 N/A
    48673 1rye:A (2.3) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 N/A
    48674 1rye:B (2.3) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 N/A
    48675 1rye:B (2.3) BS02 NDP 1.1.99.28 GO:0000166 ... Q07982 N/A
    48676 1rye:C (2.3) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 N/A
    48677 1rye:D (2.3) BS01 NDP 1.1.99.28 GO:0000166 ... Q07982 N/A
    48678 1rye:D (2.3) BS02 NDP 1.1.99.28 GO:0000166 ... Q07982 N/A
    48679 1ryf:A (1.75) BS01 GDP 3.6.5.2 GO:0003924 ... P63000 14625275
    48680 1ryf:B (1.75) BS01 GDP 3.6.5.2 GO:0003924 ... P63000 14625275
    48681 1ryh:A (1.75) BS01 GNP 3.6.5.2 GO:0003924 ... P63000 14625275
    48682 1ryh:B (1.75) BS01 GNP 3.6.5.2 GO:0003924 ... P63000 14625275
    48683 1ryi:A (1.8) BS01 FAD 1.4.3.19 GO:0005737 ... O31616 15105420
    48684 1ryi:A (1.8) BS02 GOA 1.4.3.19 GO:0005737 ... O31616 15105420
    48685 1ryi:B (1.8) BS01 FAD 1.4.3.19 GO:0005737 ... O31616 15105420
    48686 1ryi:B (1.8) BS02 GOA 1.4.3.19 GO:0005737 ... O31616 15105420
    48687 1ryi:C (1.8) BS01 FAD 1.4.3.19 GO:0005737 ... O31616 15105420
    48688 1ryi:C (1.8) BS02 GOA 1.4.3.19 GO:0005737 ... O31616 15105420
    48689 1ryi:D (1.8) BS01 FAD 1.4.3.19 GO:0005737 ... O31616 15105420
    48690 1ryi:D (1.8) BS02 GOA 1.4.3.19 GO:0005737 ... O31616 15105420
    48691 1ryo:A (1.2) BS01 OXL ? GO:0005576 ... P02787 15123433
    48692 1ryo:A (1.2) BS02 FE ? GO:0005576 ... P02787 15123433
    48693 1ryp:1 (1.9) BS01 MG 3.4.99.46 GO:0003674 ... P23724 9087403
    48694 1ryp:1 (1.9) BS02 MG 3.4.99.46 GO:0003674 ... P23724 9087403
    48695 1ryp:A (1.9) BS01 MG 3.4.99.46 GO:0003674 ... P21243 9087403
    48696 1ryp:A (1.9) BS02 MG 3.4.99.46 GO:0003674 ... P21243 9087403
    48697 1ryp:H (1.9) BS01 MG 3.4.25.1 GO:0004175 ... P38624 9087403
    48698 1ryp:I (1.9) BS01 MG 3.4.25.1 GO:0004298 ... P25043 9087403
    48699 1ryp:J (1.9) BS01 MG 3.4.99.46 GO:0005515 ... P25451 9087403
    48700 1ryp:L (1.9) BS01 MG 3.4.25.1 GO:0004298 ... P30656 9087403
    48701 1ryp:M (1.9) BS01 MG 3.4.99.46 GO:0003674 ... P23724 9087403
    48702 1ryp:M (1.9) BS02 MG 3.4.99.46 GO:0003674 ... P23724 9087403
    48703 1ryp:O (1.9) BS01 MG 3.4.99.46 GO:0003674 ... P21243 9087403
    48704 1ryp:V (1.9) BS01 MG 3.4.25.1 GO:0004175 ... P38624 9087403
    48705 1ryp:W (1.9) BS01 MG 3.4.25.1 GO:0004298 ... P25043 9087403
    48706 1ryp:X (1.9) BS01 MG 3.4.99.46 GO:0005515 ... P25451 9087403
    48707 1ryp:Z (1.9) BS01 MG 3.4.25.1 GO:0004298 ... P30656 9087403
    48708 1ryq:A (1.38) BS01 ZN ? GO:0005515 ... Q8U440 15858261
    48709 1ryr:A (2.28) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 12904819
    48710 1ryr:A (2.28) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 12904819
    48711 1ryr:A (2.28) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 12904819
    48712 1ryr:A (2.28) BS04 ATP 2.7.7.7 GO:0000287 ... Q97W02 12904819
    48713 1rys:A (2.03) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 12904819
    48714 1rys:A (2.03) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 12904819
    48715 1rys:A (2.03) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 12904819
    48716 1rys:A (2.03) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 12904819
    48717 1rys:A (2.03) BS05 ATP 2.7.7.7 GO:0000287 ... Q97W02 12904819
    48718 1rys:B (2.03) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 12904819
    48719 1rys:B (2.03) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 12904819
    48720 1rys:B (2.03) BS03 dna 2.7.7.7 GO:0000287 ... Q97W02 12904819
    48721 1rys:B (2.03) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 12904819
    48722 1rys:B (2.03) BS05 CA 2.7.7.7 GO:0000287 ... Q97W02 12904819
    48723 1rys:B (2.03) BS06 ATP 2.7.7.7 GO:0000287 ... Q97W02 12904819
    48724 1ryt:A (2.1) BS01 FE ? GO:0005506 ... P24931 8646540
    48725 1ryt:A (2.1) BS02 FE ? GO:0005506 ... P24931 8646540
    48726 1ryt:A (2.1) BS03 FE ? GO:0005506 ... P24931 8646540
    48727 1ryw:A (2.3) BS01 PO4 2.5.1.7 GO:0003824 ... P33038 15531591
    48728 1ryw:A (2.3) BS02 EPU 2.5.1.7 GO:0003824 ... P33038 15531591
    48729 1ryw:B (2.3) BS01 PO4 2.5.1.7 GO:0003824 ... P33038 15531591
    48730 1ryw:B (2.3) BS02 EPU 2.5.1.7 GO:0003824 ... P33038 15531591
    48731 1ryw:C (2.3) BS01 PO4 2.5.1.7 GO:0003824 ... P33038 15531591
    48732 1ryw:C (2.3) BS02 EPU 2.5.1.7 GO:0003824 ... P33038 15531591
    48733 1ryw:D (2.3) BS01 PO4 2.5.1.7 GO:0003824 ... P33038 15531591
    48734 1ryw:D (2.3) BS02 EPU 2.5.1.7 GO:0003824 ... P33038 15531591
    48735 1ryw:E (2.3) BS01 PO4 2.5.1.7 GO:0003824 ... P33038 15531591
    48736 1ryw:E (2.3) BS02 EPU 2.5.1.7 GO:0003824 ... P33038 15531591
    48737 1ryw:F (2.3) BS01 PO4 2.5.1.7 GO:0003824 ... P33038 15531591
    48738 1ryw:F (2.3) BS02 EPU 2.5.1.7 GO:0003824 ... P33038 15531591
    48739 1ryw:G (2.3) BS01 PO4 2.5.1.7 GO:0003824 ... P33038 15531591
    48740 1ryw:G (2.3) BS02 EPU 2.5.1.7 GO:0003824 ... P33038 15531591
    48741 1ryw:H (2.3) BS01 PO4 2.5.1.7 GO:0003824 ... P33038 15531591
    48742 1ryw:H (2.3) BS02 EPU 2.5.1.7 GO:0003824 ... P33038 15531591
    48743 1rz0:A (2.2) BS01 FAD ? GO:0006208 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    48744 1rz0:B (2.2) BS01 FAD ? GO:0006208 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    48745 1rz0:C (2.2) BS01 FAD ? GO:0006208 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    48746 1rz0:D (2.2) BS01 FAD ? GO:0006208 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    48747 1rz0:E (2.2) BS01 FAD ? GO:0006208 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    48748 1rz0:F (2.2) BS01 FAD ? GO:0006208 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    48749 1rz0:G (2.2) BS01 FAD ? GO:0006208 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    48750 1rz0:H (2.2) BS01 FAD ? GO:0006208 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    48751 1rz1:A (2.1) BS01 FAD ? GO:0006208 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    48752 1rz1:A (2.1) BS02 NAD ? GO:0006208 ... Q9LAG2 14703520
    48753 1rz1:B (2.1) BS01 FAD ? GO:0006208 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    48754 1rz1:B (2.1) BS02 NAD ? GO:0006208 ... Q9LAG2 14703520
    48755 1rz1:C (2.1) BS01 FAD ? GO:0006208 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    48756 1rz1:C (2.1) BS02 NAD ? GO:0006208 ... Q9LAG2 14703520
    48757 1rz1:C (2.1) BS03 NAD ? GO:0006208 ... Q9LAG2 14703520
    48758 1rz1:D (2.1) BS01 FAD ? GO:0006208 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    48759 1rz1:D (2.1) BS02 NAD ? GO:0006208 ... Q9LAG2 14703520
    48760 1rz1:E (2.1) BS01 FAD ? GO:0006208 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    48761 1rz1:E (2.1) BS02 NAD ? GO:0006208 ... Q9LAG2 14703520
    48762 1rz1:F (2.1) BS01 FAD ? GO:0006208 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    48763 1rz1:F (2.1) BS02 NAD ? GO:0006208 ... Q9LAG2 14703520
    48764 1rz1:G (2.1) BS01 FAD ? GO:0006208 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    48765 1rz1:G (2.1) BS02 NAD ? GO:0006208 ... Q9LAG2 14703520
    48766 1rz1:H (2.1) BS01 FAD ? GO:0006208 ... Q9LAG2 14703520 MOAD: Kd=9.8nM
    48767 1rz1:H (2.1) BS02 NAD ? GO:0006208 ... Q9LAG2 14703520
    48768 1rz5:A (2.4) BS01 CA 1.11.1.5 GO:0004130 ... P83787 15274917
    48769 1rz5:A (2.4) BS02 HEC 1.11.1.5 GO:0004130 ... P83787 15274917
    48770 1rz5:A (2.4) BS03 HEC 1.11.1.5 GO:0004130 ... P83787 15274917
    48771 1rz6:A (2.2) BS01 HEC 1.11.1.5 GO:0004130 ... P83787 15274917
    48772 1rz6:A (2.2) BS02 HEC 1.11.1.5 GO:0004130 ... P83787 15274917
    48773 1rz9:A (3.1) BS01 dna ? N/A Q9YJC1 14967147
    48774 1rz9:A (3.1) BS02 dna ? N/A Q9YJC1 14967147
    48775 1rz9:B (3.1) BS01 dna ? N/A Q9YJC1 14967147
    48776 1rz9:B (3.1) BS02 dna ? N/A Q9YJC1 14967147
    48777 1rz9:C (3.1) BS01 dna ? N/A Q9YJC1 14967147
    48778 1rz9:C (3.1) BS02 dna ? N/A Q9YJC1 14967147
    48779 1rz9:D (3.1) BS01 dna ? N/A Q9YJC1 14967147
    48780 1rz9:D (3.1) BS02 dna ? N/A Q9YJC1 14967147
    48781 1rz9:E (3.1) BS01 dna ? N/A Q9YJC1 14967147
    48782 1rz9:E (3.1) BS02 dna ? N/A Q9YJC1 14967147
    48783 1rza:A (1.9) BS01 CO 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00918 15299481
    48784 1rzb:A (1.8) BS01 CO 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00918 15299481
    48785 1rzc:A (1.9) BS01 CU 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00918 15299481
    48786 1rzc:A (1.9) BS02 OXY 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00918 15299481
    48787 1rzd:A (1.9) BS01 MN 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00918 15299481
    48788 1rze:A (1.9) BS01 NI 4.2.1.1
    4.2.1.69    		 GO:0004064 ... P00918 15299481
    48789 1rzg:A (2.0) BS01 GLC N/A N/A N/A 14981267
    48790 1rzg:A (2.0) BS02 GLC N/A N/A N/A 14981267
    48791 1rzg:A (2.0) BS03 FRU N/A N/A N/A 14981267
    48792 1rzg:A (2.0) BS04 GLC N/A N/A N/A 14981267
    48793 1rzg:B (2.0) BS01 FRU N/A N/A N/A 14981267
    48794 1rzg:B (2.0) BS02 FRU N/A N/A N/A 14981267
    48795 1rzg:C (2.0) BS01 GLC N/A N/A N/A 14981267
    48796 1rzg:C (2.0) BS02 FRU N/A N/A N/A 14981267
    48797 1rzg:C (2.0) BS03 GLC N/A N/A N/A 14981267
    48798 1rzg:D (2.0) BS01 FRU N/A N/A N/A 14981267
    48799 1rzh:L (1.8) BS01 BCL ? GO:0009772 ... P0C0Y8 15062092
    48800 1rzh:L (1.8) BS02 BCL ? GO:0009772 ... P0C0Y8 15062092
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).