SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    489801 6jni:A (2.9) BS02 dna ? GO:0003677 ... Q93TP7 31548408
    489802 6jni:A (2.9) BS03 dna ? GO:0003677 ... Q93TP7 31548408
    489803 6jni:A (2.9) BS04 ZN ? GO:0003677 ... Q93TP7 31548408
    489804 6jni:A (2.9) BS05 ZN ? GO:0003677 ... Q93TP7 31548408
    489805 6jni:B (2.9) BS01 dna ? GO:0003677 ... Q93TP7 31548408
    489806 6jni:B (2.9) BS02 dna ? GO:0003677 ... Q93TP7 31548408
    489807 6jni:B (2.9) BS03 ZN ? GO:0003677 ... Q93TP7 31548408
    489808 6jni:C (2.9) BS01 dna ? GO:0003677 ... Q93TP7 31548408
    489809 6jni:C (2.9) BS02 dna ? GO:0003677 ... Q93TP7 31548408
    489810 6jni:C (2.9) BS03 ZN ? GO:0003677 ... Q93TP7 31548408
    489811 6jni:D (2.9) BS01 dna ? GO:0003677 ... Q93TP7 31548408
    489812 6jni:D (2.9) BS02 dna ? GO:0003677 ... Q93TP7 31548408
    489813 6jni:D (2.9) BS03 dna ? GO:0003677 ... Q93TP7 31548408
    489814 6jni:D (2.9) BS04 ZN ? GO:0003677 ... Q93TP7 31548408
    489815 6jni:D (2.9) BS05 ZN ? GO:0003677 ... Q93TP7 31548408
    489816 6jni:E (2.9) BS01 dna ? GO:0003677 ... Q93TP7 31548408
    489817 6jni:E (2.9) BS02 dna ? GO:0003677 ... Q93TP7 31548408
    489818 6jni:E (2.9) BS03 ZN ? GO:0003677 ... Q93TP7 31548408
    489819 6jni:E (2.9) BS04 ZN ? GO:0003677 ... Q93TP7 31548408
    489820 6jni:F (2.9) BS01 dna ? GO:0003677 ... Q93TP7 31548408
    489821 6jni:F (2.9) BS02 dna ? GO:0003677 ... Q93TP7 31548408
    489822 6jni:F (2.9) BS03 ZN ? GO:0003677 ... Q93TP7 31548408
    489823 6jni:G (2.9) BS01 dna ? GO:0003677 ... Q93TP7 31548408
    489824 6jni:G (2.9) BS02 dna ? GO:0003677 ... Q93TP7 31548408
    489825 6jni:G (2.9) BS03 ZN ? GO:0003677 ... Q93TP7 31548408
    489826 6jni:G (2.9) BS04 ZN ? GO:0003677 ... Q93TP7 31548408
    489827 6jni:H (2.9) BS01 dna ? GO:0003677 ... Q93TP7 31548408
    489828 6jni:H (2.9) BS02 dna ? GO:0003677 ... Q93TP7 31548408
    489829 6jni:H (2.9) BS03 dna ? GO:0003677 ... Q93TP7 31548408
    489830 6jni:H (2.9) BS04 ZN ? GO:0003677 ... Q93TP7 31548408
    489831 6jni:H (2.9) BS05 ZN ? GO:0003677 ... Q93TP7 31548408
    489832 6jnk:A (2.2) BS01 NAP 1.1.1.120
    1.1.1.376
    1.1.1.48
    GO:0000166 ... Q53TZ2 31058311
    489833 6jnk:B (2.2) BS01 NAP 1.1.1.120
    1.1.1.376
    1.1.1.48
    GO:0000166 ... Q53TZ2 31058311
    489834 6jnk:C (2.2) BS01 NAP 1.1.1.120
    1.1.1.376
    1.1.1.48
    GO:0000166 ... Q53TZ2 31058311
    489835 6jnk:D (2.2) BS01 NAP 1.1.1.120
    1.1.1.376
    1.1.1.48
    GO:0000166 ... Q53TZ2 31058311
    489836 6jnl:A (2.15) BS01 dna 1.14.11.- N/A Q9STM3 31048693
    489837 6jnl:A (2.15) BS02 dna 1.14.11.- N/A Q9STM3 31048693
    489838 6jnl:A (2.15) BS03 ZN 1.14.11.- N/A Q9STM3 31048693
    489839 6jnl:A (2.15) BS04 ZN 1.14.11.- N/A Q9STM3 31048693
    489840 6jnl:A (2.15) BS05 ZN 1.14.11.- N/A Q9STM3 31048693
    489841 6jnl:A (2.15) BS06 MG 1.14.11.- N/A Q9STM3 31048693
    489842 6jnm:A (2.05) BS01 dna 1.14.11.- N/A Q9STM3 31048693
    489843 6jnm:A (2.05) BS02 dna 1.14.11.- N/A Q9STM3 31048693
    489844 6jnm:A (2.05) BS03 ZN 1.14.11.- N/A Q9STM3 31048693
    489845 6jnm:A (2.05) BS04 ZN 1.14.11.- N/A Q9STM3 31048693
    489846 6jnm:A (2.05) BS05 ZN 1.14.11.- N/A Q9STM3 31048693
    489847 6jnm:B (2.05) BS01 dna 1.14.11.- N/A Q9STM3 31048693
    489848 6jnm:B (2.05) BS02 dna 1.14.11.- N/A Q9STM3 31048693
    489849 6jnm:B (2.05) BS03 ZN 1.14.11.- N/A Q9STM3 31048693
    489850 6jnm:B (2.05) BS04 ZN 1.14.11.- N/A Q9STM3 31048693
    489851 6jnm:B (2.05) BS05 ZN 1.14.11.- N/A Q9STM3 31048693
    489852 6jnn:A (2.6) BS01 dna 1.14.11.- N/A Q9STM3 31048693
    489853 6jnn:A (2.6) BS02 dna 1.14.11.- N/A Q9STM3 31048693
    489854 6jnn:A (2.6) BS03 ZN 1.14.11.- N/A Q9STM3 31048693
    489855 6jnn:A (2.6) BS04 ZN 1.14.11.- N/A Q9STM3 31048693
    489856 6jnn:A (2.6) BS05 ZN 1.14.11.- N/A Q9STM3 31048693
    489857 6jnn:B (2.6) BS01 dna 1.14.11.- N/A Q9STM3 31048693
    489858 6jnn:B (2.6) BS02 dna 1.14.11.- N/A Q9STM3 31048693
    489859 6jnn:B (2.6) BS03 ZN 1.14.11.- N/A Q9STM3 31048693
    489860 6jnn:B (2.6) BS04 ZN 1.14.11.- N/A Q9STM3 31048693
    489861 6jnn:B (2.6) BS05 ZN 1.14.11.- N/A Q9STM3 31048693
    489862 6jnn:G (2.6) BS01 dna 1.14.11.- N/A Q9STM3 31048693
    489863 6jnn:G (2.6) BS02 dna 1.14.11.- N/A Q9STM3 31048693
    489864 6jnn:G (2.6) BS03 ZN 1.14.11.- N/A Q9STM3 31048693
    489865 6jnn:G (2.6) BS04 ZN 1.14.11.- N/A Q9STM3 31048693
    489866 6jnn:N (2.6) BS01 dna 1.14.11.- N/A Q9STM3 31048693
    489867 6jnn:N (2.6) BS02 dna 1.14.11.- N/A Q9STM3 31048693
    489868 6jnn:N (2.6) BS03 ZN 1.14.11.- N/A Q9STM3 31048693
    489869 6jnn:N (2.6) BS04 ZN 1.14.11.- N/A Q9STM3 31048693
    489870 6jno:A (2.65) BS01 WY5 ? GO:0003677 ... P19793 31483660 BindingDB: Kd=233nM, EC50=22nM, Ki=230nM
    489871 6jno:D (2.65) BS01 WY5 ? GO:0003677 ... P19793 31483660 BindingDB: Kd=233nM, EC50=22nM, Ki=230nM
    489872 6jnr:A (2.3) BS01 peptide ? GO:0003677 ... P19793 N/A
    489873 6jnr:A (2.3) BS02 WY5 ? GO:0003677 ... P19793 N/A BindingDB: Kd=233nM, EC50=22nM, Ki=230nM
    489874 6jnr:B (2.3) BS01 peptide ? GO:0003677 ... P19793 N/A
    489875 6jnr:B (2.3) BS02 WY5 ? GO:0003677 ... P19793 N/A BindingDB: Kd=233nM, EC50=22nM, Ki=230nM
    489876 6jnt:A (3.0) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 30928615
    489877 6jnt:A (3.0) BS02 NDP 1.11.1.6 GO:0004096 ... P00432 30928615
    489878 6jnt:B (3.0) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 30928615
    489879 6jnt:B (3.0) BS02 NDP 1.11.1.6 GO:0004096 ... P00432 30928615
    489880 6jnt:C (3.0) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 30928615
    489881 6jnt:C (3.0) BS02 NDP 1.11.1.6 GO:0004096 ... P00432 30928615
    489882 6jnt:D (3.0) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 30928615
    489883 6jnt:D (3.0) BS02 NDP 1.11.1.6 GO:0004096 ... P00432 30928615
    489884 6jnu:A (3.0) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 30928615
    489885 6jnu:A (3.0) BS02 NDP 1.11.1.6 GO:0004096 ... P00432 30928615
    489886 6jnu:B (3.0) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 30928615
    489887 6jnu:B (3.0) BS02 NDP 1.11.1.6 GO:0004096 ... P00432 30928615
    489888 6jnu:C (3.0) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 30928615
    489889 6jnu:C (3.0) BS02 NDP 1.11.1.6 GO:0004096 ... P00432 30928615
    489890 6jnu:D (3.0) BS01 HEM 1.11.1.6 GO:0004096 ... P00432 30928615
    489891 6jnu:D (3.0) BS02 NDP 1.11.1.6 GO:0004096 ... P00432 30928615
    489892 6jnx:C (4.08) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 31266960
    489893 6jnx:C (4.08) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 31266960
    489894 6jnx:C (4.08) BS03 dna 2.7.7.6 GO:0000345 ... P0A8V2 31266960
    489895 6jnx:D (4.08) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 31266960
    489896 6jnx:D (4.08) BS02 rna 2.7.7.6 GO:0000287 ... P0A8T7 31266960
    489897 6jnx:D (4.08) BS03 dna 2.7.7.6 GO:0000287 ... P0A8T7 31266960
    489898 6jnx:D (4.08) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 31266960
    489899 6jnx:D (4.08) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 31266960
    489900 6jnx:D (4.08) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 31266960
    489901 6jnx:F (4.08) BS01 dna ? GO:0000345 ... P00579 31266960
    489902 6jnx:P (4.08) BS01 dna ? GO:0003677 ... M1FPN0 31266960
    489903 6jnx:P (4.08) BS02 dna ? GO:0003677 ... M1FPN0 31266960
    489904 6jnx:Q (4.08) BS01 dna ? GO:0003677 ... M1FPN0 31266960
    489905 6jnx:Q (4.08) BS02 dna ? GO:0003677 ... M1FPN0 31266960
    489906 6jo0:A (1.651) BS01 RET ? GO:0016020 ... G8DI69 31548428
    489907 6jo1:A (2.1) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 32157795
    489908 6jo1:A (2.1) BS02 BWX 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 32157795
    489909 6jo1:B (2.1) BS01 HEM 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 32157795
    489910 6jo1:B (2.1) BS02 BWX 1.14.14.1
    1.6.2.4
    GO:0004497 ... P14779 32157795
    489911 6jo2:A (1.55) BS01 FES ? GO:0005515 ... P0A3C9 31520614
    489912 6jo3:A (2.35) BS01 1GP 2.5.1.41 GO:0000287 ... Q9HJH3 31282866
    489913 6jo5:1 (2.9) BS01 CHL ? GO:0009765 ... Q05093 31182847
    489914 6jo5:1 (2.9) BS02 CLA ? GO:0009765 ... Q05093 31182847
    489915 6jo5:1 (2.9) BS03 CLA ? GO:0009765 ... Q05093 31182847
    489916 6jo5:1 (2.9) BS04 CLA ? GO:0009765 ... Q05093 31182847
    489917 6jo5:1 (2.9) BS05 CLA ? GO:0009765 ... Q05093 31182847
    489918 6jo5:1 (2.9) BS06 CHL ? GO:0009765 ... Q05093 31182847
    489919 6jo5:1 (2.9) BS07 CLA ? GO:0009765 ... Q05093 31182847
    489920 6jo5:1 (2.9) BS08 CLA ? GO:0009765 ... Q05093 31182847
    489921 6jo5:1 (2.9) BS09 CLA ? GO:0009765 ... Q05093 31182847
    489922 6jo5:1 (2.9) BS10 CLA ? GO:0009765 ... Q05093 31182847
    489923 6jo5:1 (2.9) BS11 CLA ? GO:0009765 ... Q05093 31182847
    489924 6jo5:1 (2.9) BS12 CLA ? GO:0009765 ... Q05093 31182847
    489925 6jo5:1 (2.9) BS13 CLA ? GO:0009765 ... Q05093 31182847
    489926 6jo5:2 (2.9) BS01 CLA ? GO:0009416 ... A8IKC8 31182847
    489927 6jo5:2 (2.9) BS02 CLA ? GO:0009416 ... A8IKC8 31182847
    489928 6jo5:2 (2.9) BS03 CLA ? GO:0009416 ... A8IKC8 31182847
    489929 6jo5:2 (2.9) BS04 CLA ? GO:0009416 ... A8IKC8 31182847
    489930 6jo5:2 (2.9) BS05 CLA ? GO:0009416 ... A8IKC8 31182847
    489931 6jo5:2 (2.9) BS06 CLA ? GO:0009416 ... A8IKC8 31182847
    489932 6jo5:2 (2.9) BS07 CLA ? GO:0009416 ... A8IKC8 31182847
    489933 6jo5:2 (2.9) BS08 CLA ? GO:0009416 ... A8IKC8 31182847
    489934 6jo5:2 (2.9) BS09 CLA ? GO:0009416 ... A8IKC8 31182847
    489935 6jo5:3 (2.9) BS01 CLA N/A GO:0009765 ... N/A 31182847
    489936 6jo5:3 (2.9) BS02 CLA N/A GO:0009765 ... N/A 31182847
    489937 6jo5:3 (2.9) BS03 CLA N/A GO:0009765 ... N/A 31182847
    489938 6jo5:3 (2.9) BS04 CLA N/A GO:0009765 ... N/A 31182847
    489939 6jo5:3 (2.9) BS05 CLA N/A GO:0009765 ... N/A 31182847
    489940 6jo5:3 (2.9) BS06 CLA N/A GO:0009765 ... N/A 31182847
    489941 6jo5:3 (2.9) BS07 CLA N/A GO:0009765 ... N/A 31182847
    489942 6jo5:3 (2.9) BS08 CHL N/A GO:0009765 ... N/A 31182847
    489943 6jo5:3 (2.9) BS09 CLA N/A GO:0009765 ... N/A 31182847
    489944 6jo5:3 (2.9) BS10 CLA N/A GO:0009765 ... N/A 31182847
    489945 6jo5:3 (2.9) BS11 CLA N/A GO:0009765 ... N/A 31182847
    489946 6jo5:3 (2.9) BS12 CLA N/A GO:0009765 ... N/A 31182847
    489947 6jo5:3 (2.9) BS13 CLA N/A GO:0009765 ... N/A 31182847
    489948 6jo5:3 (2.9) BS14 CLA N/A GO:0009765 ... N/A 31182847
    489949 6jo5:3 (2.9) BS15 CLA N/A GO:0009765 ... N/A 31182847
    489950 6jo5:3 (2.9) BS16 CLA N/A GO:0009765 ... N/A 31182847
    489951 6jo5:4 (2.9) BS01 CHL ? GO:0009765 ... Q75VZ0 31182847
    489952 6jo5:4 (2.9) BS02 CLA ? GO:0009765 ... Q75VZ0 31182847
    489953 6jo5:4 (2.9) BS03 CLA ? GO:0009765 ... Q75VZ0 31182847
    489954 6jo5:4 (2.9) BS04 CLA ? GO:0009765 ... Q75VZ0 31182847
    489955 6jo5:4 (2.9) BS05 CLA ? GO:0009765 ... Q75VZ0 31182847
    489956 6jo5:4 (2.9) BS06 CHL ? GO:0009765 ... Q75VZ0 31182847
    489957 6jo5:4 (2.9) BS07 CHL ? GO:0009765 ... Q75VZ0 31182847
    489958 6jo5:4 (2.9) BS08 CHL ? GO:0009765 ... Q75VZ0 31182847
    489959 6jo5:4 (2.9) BS09 CLA ? GO:0009765 ... Q75VZ0 31182847
    489960 6jo5:4 (2.9) BS10 CLA ? GO:0009765 ... Q75VZ0 31182847
    489961 6jo5:4 (2.9) BS11 CLA ? GO:0009765 ... Q75VZ0 31182847
    489962 6jo5:4 (2.9) BS12 CLA ? GO:0009765 ... Q75VZ0 31182847
    489963 6jo5:4 (2.9) BS13 CLA ? GO:0009765 ... Q75VZ0 31182847
    489964 6jo5:4 (2.9) BS14 CLA ? GO:0009765 ... Q75VZ0 31182847
    489965 6jo5:4 (2.9) BS15 CLA ? GO:0009765 ... Q75VZ0 31182847
    489966 6jo5:4 (2.9) BS16 CHL ? GO:0009765 ... Q75VZ0 31182847
    489967 6jo5:5 (2.9) BS01 CLA ? GO:0009765 ... Q75VY8 31182847
    489968 6jo5:5 (2.9) BS02 CLA ? GO:0009765 ... Q75VY8 31182847
    489969 6jo5:5 (2.9) BS03 CLA ? GO:0009765 ... Q75VY8 31182847
    489970 6jo5:5 (2.9) BS04 CLA ? GO:0009765 ... Q75VY8 31182847
    489971 6jo5:5 (2.9) BS05 CLA ? GO:0009765 ... Q75VY8 31182847
    489972 6jo5:5 (2.9) BS06 CLA ? GO:0009765 ... Q75VY8 31182847
    489973 6jo5:5 (2.9) BS07 CHL ? GO:0009765 ... Q75VY8 31182847
    489974 6jo5:5 (2.9) BS08 CHL ? GO:0009765 ... Q75VY8 31182847
    489975 6jo5:5 (2.9) BS09 CLA ? GO:0009765 ... Q75VY8 31182847
    489976 6jo5:5 (2.9) BS10 CLA ? GO:0009765 ... Q75VY8 31182847
    489977 6jo5:5 (2.9) BS11 CLA ? GO:0009765 ... Q75VY8 31182847
    489978 6jo5:5 (2.9) BS12 CLA ? GO:0009765 ... Q75VY8 31182847
    489979 6jo5:5 (2.9) BS13 CLA ? GO:0009765 ... Q75VY8 31182847
    489980 6jo5:5 (2.9) BS14 CLA ? GO:0009765 ... Q75VY8 31182847
    489981 6jo5:5 (2.9) BS15 CLA ? GO:0009765 ... Q75VY8 31182847
    489982 6jo5:5 (2.9) BS16 CLA ? GO:0009765 ... Q75VY8 31182847
    489983 6jo5:5 (2.9) BS17 CHL ? GO:0009765 ... Q75VY8 31182847
    489984 6jo5:5 (2.9) BS18 CLA ? GO:0009765 ... Q75VY8 31182847
    489985 6jo5:5 (2.9) BS19 CLA ? GO:0009765 ... Q75VY8 31182847
    489986 6jo5:5 (2.9) BS20 CLA ? GO:0009765 ... Q75VY8 31182847
    489987 6jo5:6 (2.9) BS01 CLA ? GO:0009416 ... Q75VY6 31182847
    489988 6jo5:6 (2.9) BS02 CLA ? GO:0009416 ... Q75VY6 31182847
    489989 6jo5:6 (2.9) BS03 CLA ? GO:0009416 ... Q75VY6 31182847
    489990 6jo5:6 (2.9) BS04 CLA ? GO:0009416 ... Q75VY6 31182847
    489991 6jo5:6 (2.9) BS05 CLA ? GO:0009416 ... Q75VY6 31182847
    489992 6jo5:6 (2.9) BS06 CLA ? GO:0009416 ... Q75VY6 31182847
    489993 6jo5:6 (2.9) BS07 CLA ? GO:0009416 ... Q75VY6 31182847
    489994 6jo5:6 (2.9) BS08 CHL ? GO:0009416 ... Q75VY6 31182847
    489995 6jo5:6 (2.9) BS09 CHL ? GO:0009416 ... Q75VY6 31182847
    489996 6jo5:6 (2.9) BS10 CHL ? GO:0009416 ... Q75VY6 31182847
    489997 6jo5:6 (2.9) BS11 CLA ? GO:0009416 ... Q75VY6 31182847
    489998 6jo5:6 (2.9) BS12 CLA ? GO:0009416 ... Q75VY6 31182847
    489999 6jo5:6 (2.9) BS13 CLA ? GO:0009416 ... Q75VY6 31182847
    490000 6jo5:6 (2.9) BS14 CLA ? GO:0009416 ... Q75VY6 31182847

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).