SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    49601 1s7w:K (2.4) BS01 peptide ? GO:0001916 ... P01887 15100292
    49602 1s7x:A (2.41) BS01 peptide ? GO:0006955 ... P01899 15100292
    49603 1s7x:D (2.41) BS01 peptide ? GO:0006955 ... P01899 15100292
    49604 1s7x:G (2.41) BS01 peptide ? GO:0006955 ... P01899 15100292
    49605 1s7x:J (2.41) BS01 peptide ? GO:0006955 ... P01899 15100292
    49606 1s7x:K (2.41) BS01 peptide ? GO:0001916 ... P01887 15100292
    49607 1s7y:A (1.75) BS01 GLU ? GO:0015276 ... P42260 15721240 MOAD: Ki=1.4uM
    49608 1s7y:B (1.75) BS01 GLU ? GO:0015276 ... P42260 15721240
    49609 1s81:A (1.7) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    49610 1s81:A (1.7) BS02 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    49611 1s81:A (1.7) BS03 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    49612 1s81:A (1.7) BS04 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    49613 1s82:A (1.85) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    49614 1s82:A (1.85) BS02 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    49615 1s82:A (1.85) BS03 EDO 3.4.21.4 GO:0004252 ... P00761 15005618
    49616 1s82:A (1.85) BS04 SBE 3.4.21.4 GO:0004252 ... P00761 15005618
    49617 1s83:A (1.25) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    49618 1s83:A (1.25) BS02 MG 3.4.21.4 GO:0004252 ... P00761 15005618
    49619 1s83:A (1.25) BS03 4HA 3.4.21.4 GO:0004252 ... P00761 15005618
    49620 1s84:A (1.85) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    49621 1s84:A (1.85) BS02 DYB 3.4.21.4 GO:0004252 ... P00761 15005618
    49622 1s85:A (2.2) BS01 CA 3.4.21.4 GO:0004252 ... P00761 15005618
    49623 1s85:A (2.2) BS02 SBZ 3.4.21.4 GO:0004252 ... P00761 15005618
    49624 1s89:A (2.22) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki=5.8uM
    49625 1s89:B (2.22) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki=5.8uM
    49626 1s89:C (2.22) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki=5.8uM
    49627 1s89:D (2.22) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki=5.8uM
    49628 1s89:E (2.22) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki=5.8uM
    49629 1s89:F (2.22) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki=5.8uM
    49630 1s8a:A (2.2) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki~74uM
    49631 1s8a:B (2.2) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki~74uM
    49632 1s8a:C (2.2) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki~74uM
    49633 1s8a:D (2.2) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki~74uM
    49634 1s8a:E (2.2) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki~74uM
    49635 1s8a:F (2.2) BS01 PGA 4.2.3.3 GO:0005737 ... P0A731 15049687 MOAD: Ki~74uM
    49636 1s8c:A (2.19) BS01 BLA 1.14.14.18 GO:0004392 ... P09601 15049686
    49637 1s8d:A (2.2) BS01 peptide ? N/A P04439 16702212
    49638 1s8e:A (2.3) BS01 MN 3.1.-.- GO:0000729 ... Q8U1N9 15047855
    49639 1s8e:A (2.3) BS02 MN 3.1.-.- GO:0000729 ... Q8U1N9 15047855
    49640 1s8e:B (2.3) BS01 MN 3.1.-.- GO:0000729 ... Q8U1N9 15047855
    49641 1s8e:B (2.3) BS02 MN 3.1.-.- GO:0000729 ... Q8U1N9 15047855
    49642 1s8f:A (1.77) BS01 GDP ? GO:0003924 ... P24408 15196914
    49643 1s8f:B (1.77) BS01 GDP ? GO:0003924 ... P24408 15196914
    49644 1s8j:A (2.3) BS01 NO3 ? GO:0005216 ... P02945 15109251
    49645 1s8j:A (2.3) BS02 RET ? GO:0005216 ... P02945 15109251
    49646 1s8l:A (2.3) BS01 RET ? GO:0005216 ... P02945 15109251
    49647 1s8n:A (1.482) BS01 AZI ? GO:0000160 ... P9WGM3 15341725
    49648 1s95:A (1.6) BS01 MN 3.1.3.16 GO:0016787 ... P53041 15155720
    49649 1s95:A (1.6) BS02 MN 3.1.3.16 GO:0016787 ... P53041 15155720
    49650 1s95:B (1.6) BS01 MN 3.1.3.16 GO:0016787 ... P53041 15155720
    49651 1s95:B (1.6) BS02 MN 3.1.3.16 GO:0016787 ... P53041 15155720
    49652 1s97:A (2.4) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49653 1s97:A (2.4) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49654 1s97:A (2.4) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49655 1s97:A (2.4) BS04 DCT 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49656 1s97:B (2.4) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49657 1s97:B (2.4) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49658 1s97:B (2.4) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49659 1s97:B (2.4) BS04 DCT 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49660 1s97:C (2.4) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49661 1s97:C (2.4) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49662 1s97:C (2.4) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49663 1s97:C (2.4) BS04 DCT 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49664 1s97:D (2.4) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49665 1s97:D (2.4) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49666 1s97:D (2.4) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49667 1s97:D (2.4) BS04 DCT 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49668 1s99:A (1.65) BS01 CA ? GO:0030975 ... O34911 15451668
    49669 1s9a:A (2.47) BS01 FE 1.13.11.- GO:0003824 ... O67987 15060064
    49670 1s9a:B (2.47) BS01 FE 1.13.11.- GO:0003824 ... O67987 15060064
    49671 1s9d:A (1.8) BS01 GDP 3.6.5.2 GO:0000139 ... P84080 14654833
    49672 1s9d:A (1.8) BS02 AFB 3.6.5.2 GO:0000139 ... P84080 14654833
    49673 1s9d:E (1.8) BS01 AFB ? GO:0005085 ... Q99418 14654833
    49674 1s9e:A (2.6) BS01 ADB 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 15115397
    49675 1s9f:A (2.0) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49676 1s9f:A (2.0) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49677 1s9f:A (2.0) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49678 1s9f:A (2.0) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49679 1s9f:A (2.0) BS05 DDY 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49680 1s9f:B (2.0) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49681 1s9f:B (2.0) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49682 1s9f:B (2.0) BS03 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49683 1s9f:B (2.0) BS04 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49684 1s9f:B (2.0) BS05 MG 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49685 1s9f:B (2.0) BS06 DDY 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49686 1s9f:C (2.0) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49687 1s9f:C (2.0) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49688 1s9f:C (2.0) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49689 1s9f:C (2.0) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49690 1s9f:C (2.0) BS05 DDY 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49691 1s9f:D (2.0) BS01 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49692 1s9f:D (2.0) BS02 dna 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49693 1s9f:D (2.0) BS03 CA 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49694 1s9f:D (2.0) BS04 MG 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49695 1s9f:D (2.0) BS05 DDY 2.7.7.7 GO:0000287 ... Q97W02 15077104
    49696 1s9g:A (2.8) BS01 ABZ 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 15115397
    49697 1s9i:A (3.2) BS01 MG 2.7.12.2 GO:0004672 ... P36507 15543157
    49698 1s9i:A (3.2) BS02 ATP 2.7.12.2 GO:0004672 ... P36507 15543157
    49699 1s9i:A (3.2) BS03 5EA 2.7.12.2 GO:0004672 ... P36507 15543157
    49700 1s9i:B (3.2) BS01 MG 2.7.12.2 GO:0004672 ... P36507 15543157
    49701 1s9i:B (3.2) BS02 ATP 2.7.12.2 GO:0004672 ... P36507 15543157
    49702 1s9i:B (3.2) BS03 5EA 2.7.12.2 GO:0004672 ... P36507 15543157
    49703 1s9j:A (2.4) BS01 MG 2.7.12.2 GO:0004672 ... Q02750 15543157
    49704 1s9j:A (2.4) BS02 ATP 2.7.12.2 GO:0004672 ... Q02750 15543157
    49705 1s9j:A (2.4) BS03 BBM 2.7.12.2 GO:0004672 ... Q02750 15543157
    49706 1s9k:C (3.1) BS01 dna ? GO:0003677 ... Q13469 N/A
    49707 1s9k:C (3.1) BS02 dna ? GO:0003677 ... Q13469 N/A
    49708 1s9k:D (3.1) BS01 dna ? GO:0003677 ... P01100 N/A
    49709 1s9k:D (3.1) BS02 dna ? GO:0003677 ... P01100 N/A
    49710 1s9k:E (3.1) BS01 dna ? GO:0003677 ... P05412 N/A
    49711 1s9k:E (3.1) BS02 dna ? GO:0003677 ... P05412 N/A
    49712 1s9p:A (2.13) BS01 DES ? N/A P62509 15161930
    49713 1s9p:B (2.13) BS01 DES ? N/A P62509 15161930
    49714 1s9p:C (2.13) BS01 DES ? N/A P62509 15161930
    49715 1s9p:D (2.13) BS01 DES ? N/A P62509 15161930
    49716 1s9q:A (2.2) BS01 OHT ? N/A P62509 15161930
    49717 1s9q:B (2.2) BS01 OHT ? N/A P62509 15161930
    49718 1s9r:A (1.6) BS01 ARG 3.5.3.6 GO:0005737 ... P23793 15062088
    49719 1s9r:B (1.6) BS01 ARG 3.5.3.6 GO:0005737 ... P23793 15062088
    49720 1s9t:A (1.8) BS01 QUS ? GO:0015276 ... P42260 15721240 MOAD: Ki=253nM
    BindingDB: Ki=134nM
    49721 1s9t:B (1.8) BS01 QUS ? GO:0015276 ... P42260 15721240 MOAD: Ki=253nM
    BindingDB: Ki=134nM
    49722 1s9v:A (2.22) BS01 peptide ? GO:0006955 ... P01909 15020763
    49723 1s9v:B (2.22) BS01 peptide ? GO:0006955 ... P01920 15020763
    49724 1s9v:D (2.22) BS01 peptide ? GO:0006955 ... P01909 15020763
    49725 1s9v:E (2.22) BS01 peptide ? GO:0006955 ... P01920 15020763
    49726 1s9w:A (2.2) BS01 peptide ? N/A P04439 15004033
    49727 1s9x:A (2.5) BS01 peptide ? N/A P04439 15004033
    49728 1s9y:A (2.3) BS01 peptide ? N/A P04439 15004033
    49729 1sa0:A (3.58) BS01 GTP 3.6.5.- GO:0000226 ... Q2HJ86 15014504
    49730 1sa0:A (3.58) BS02 CN2 3.6.5.- GO:0000226 ... Q2HJ86 15014504
    49731 1sa0:B (3.58) BS01 GDP ? GO:0000226 ... Q6B856 15014504
    49732 1sa0:B (3.58) BS02 CN2 ? GO:0000226 ... Q6B856 15014504
    49733 1sa0:C (3.58) BS01 MG 3.6.5.- GO:0000226 ... Q2HJ86 15014504
    49734 1sa0:C (3.58) BS02 GTP 3.6.5.- GO:0000226 ... Q2HJ86 15014504
    49735 1sa0:C (3.58) BS03 CN2 3.6.5.- GO:0000226 ... Q2HJ86 15014504
    49736 1sa0:D (3.58) BS01 GDP ? GO:0000226 ... Q6B856 15014504
    49737 1sa0:D (3.58) BS02 CN2 ? GO:0000226 ... Q6B856 15014504
    49738 1sa1:A (4.2) BS01 MG 3.6.5.- GO:0000226 ... Q2HJ86 15014504
    49739 1sa1:A (4.2) BS02 GTP 3.6.5.- GO:0000226 ... Q2HJ86 15014504
    49740 1sa1:B (4.2) BS01 GDP ? GO:0000226 ... Q6B856 15014504
    49741 1sa1:B (4.2) BS02 POD ? GO:0000226 ... Q6B856 15014504 BindingDB: IC50=460nM
    49742 1sa1:C (4.2) BS01 MG 3.6.5.- GO:0000226 ... Q2HJ86 15014504
    49743 1sa1:C (4.2) BS02 GTP 3.6.5.- GO:0000226 ... Q2HJ86 15014504
    49744 1sa1:D (4.2) BS01 GDP ? GO:0000226 ... Q6B856 15014504
    49745 1sa1:D (4.2) BS02 POD ? GO:0000226 ... Q6B856 15014504 BindingDB: IC50=460nM
    49746 1sa3:A (1.95) BS01 dna 3.1.21.4 GO:0003677 ... P11405 15341737
    49747 1sa3:A (1.95) BS02 dna 3.1.21.4 GO:0003677 ... P11405 15341737
    49748 1sa3:B (1.95) BS01 dna 3.1.21.4 GO:0003677 ... P11405 15341737
    49749 1sa3:B (1.95) BS02 dna 3.1.21.4 GO:0003677 ... P11405 15341737
    49750 1sa4:A (2.1) BS01 GLC 2.5.1.58
    2.5.1.59
    GO:0004660 ... P49354 15170324
    49751 1sa4:A (2.1) BS02 FPP 2.5.1.58
    2.5.1.59
    GO:0004660 ... P49354 15170324 BindingDB: Kd=2.0nM
    49752 1sa4:B (2.1) BS01 GLC 2.5.1.58 GO:0003824 ... P49356 15170324
    49753 1sa4:B (2.1) BS02 FRU 2.5.1.58 GO:0003824 ... P49356 15170324
    49754 1sa4:B (2.1) BS03 ZN 2.5.1.58 GO:0003824 ... P49356 15170324
    49755 1sa4:B (2.1) BS04 FPP 2.5.1.58 GO:0003824 ... P49356 15170324
    49756 1sa4:B (2.1) BS05 JAN 2.5.1.58 GO:0003824 ... P49356 15170324 BindingDB: IC50=0.860nM
    49757 1sa5:A (2.6) BS01 FPP 2.5.1.58
    2.5.1.59
    GO:0004660 ... Q04631 15170324
    49758 1sa5:B (2.6) BS01 ZN 2.5.1.58 GO:0003824 ... Q02293 15170324
    49759 1sa5:B (2.6) BS02 FPP 2.5.1.58 GO:0003824 ... Q02293 15170324
    49760 1sa5:B (2.6) BS03 BMV 2.5.1.58 GO:0003824 ... Q02293 15170324
    49761 1sac:A (2.0) BS01 CA ? GO:0001849 ... P02743 8114934
    49762 1sac:A (2.0) BS02 CA ? GO:0001849 ... P02743 8114934
    49763 1sac:B (2.0) BS01 CA ? GO:0001849 ... P02743 8114934
    49764 1sac:B (2.0) BS02 CA ? GO:0001849 ... P02743 8114934
    49765 1sac:C (2.0) BS01 CA ? GO:0001849 ... P02743 8114934
    49766 1sac:C (2.0) BS02 CA ? GO:0001849 ... P02743 8114934
    49767 1sac:D (2.0) BS01 CA ? GO:0001849 ... P02743 8114934
    49768 1sac:D (2.0) BS02 CA ? GO:0001849 ... P02743 8114934
    49769 1sac:E (2.0) BS01 CA ? GO:0001849 ... P02743 8114934
    49770 1sac:E (2.0) BS02 CA ? GO:0001849 ... P02743 8114934
    49771 1sat:A (1.75) BS01 ZN 3.4.24.40 GO:0001907 ... P23694 8089845
    49772 1sat:A (1.75) BS02 CA 3.4.24.40 GO:0001907 ... P23694 8089845
    49773 1sat:A (1.75) BS03 CA 3.4.24.40 GO:0001907 ... P23694 8089845
    49774 1sat:A (1.75) BS04 CA 3.4.24.40 GO:0001907 ... P23694 8089845
    49775 1sat:A (1.75) BS05 CA 3.4.24.40 GO:0001907 ... P23694 8089845
    49776 1sat:A (1.75) BS06 CA 3.4.24.40 GO:0001907 ... P23694 8089845
    49777 1sat:A (1.75) BS07 CA 3.4.24.40 GO:0001907 ... P23694 8089845
    49778 1sat:A (1.75) BS08 CA 3.4.24.40 GO:0001907 ... P23694 8089845
    49779 1sav:A (2.5) BS01 CA ? GO:0001786 ... P08758 1311770
    49780 1sav:A (2.5) BS02 CA ? GO:0001786 ... P08758 1311770
    49781 1sav:A (2.5) BS03 CA ? GO:0001786 ... P08758 1311770
    49782 1sav:A (2.5) BS04 CA ? GO:0001786 ... P08758 1311770
    49783 1saw:A (2.2) BS01 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 15551868
    49784 1saw:A (2.2) BS02 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 15551868
    49785 1saw:B (2.2) BS01 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 15551868
    49786 1saw:B (2.2) BS02 MG 3.7.1.5
    4.1.1.112
    GO:0003824 ... Q6P587 15551868
    49787 1sax:A (2.8) BS01 dna ? GO:0003677 ... P68261 14960592
    49788 1sax:A (2.8) BS02 dna ? GO:0003677 ... P68261 14960592
    49789 1sax:B (2.8) BS01 dna ? GO:0003677 ... P68261 14960592
    49790 1sax:B (2.8) BS02 dna ? GO:0003677 ... P68261 14960592
    49791 1say:A (2.1) BS01 PYR 1.4.1.1 GO:0000286 ... O52942 9665169
    49792 1saz:A (2.5) BS01 ACP 2.7.2.7 GO:0005524 ... Q9X278 19201797
    49793 1sb0:A (-1.00) BS01 peptide 2.3.1.-
    2.3.1.48
    GO:0003712 ... P45481 15019774
    49794 1sb1:H (1.9) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 15051174
    49795 1sb1:H (1.9) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 15051174
    49796 1sb1:H (1.9) BS03 165 3.4.21.5 GO:0004252 ... P00734 15051174 MOAD: Ki=128nM
    49797 1sb3:A (2.2) BS01 PCD 1.1.7.1 GO:0005506 ... O33819 15576037
    49798 1sb3:B (2.2) BS01 FAD 1.1.7.1 GO:0016491 ... O33820 15576037
    49799 1sb3:B (2.2) BS02 SF4 1.1.7.1 GO:0016491 ... O33820 15576037
    49800 1sb3:C (2.2) BS01 PCD 1.1.7.1 GO:0016491 ... O33818 15576037

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).