SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    501601 6kvc:A (1.66) BS02 UPG ? GO:0000166 ... A0A003 31653344
    501602 6kvd:A (2.21) BS01 dna ? GO:0000786 ... P68431 31793981
    501603 6kvd:A (2.21) BS02 dna ? GO:0000786 ... P68431 31793981
    501604 6kvd:B (2.21) BS01 dna ? GO:0000781 ... P62805 31793981
    501605 6kvd:B (2.21) BS02 dna ? GO:0000781 ... P62805 31793981
    501606 6kvd:C (2.21) BS01 dna ? GO:0000786 ... Q9BTM1 31793981
    501607 6kvd:C (2.21) BS02 dna ? GO:0000786 ... Q9BTM1 31793981
    501608 6kvd:D (2.21) BS01 dna ? GO:0000786 ... P06899 31793981
    501609 6kvd:D (2.21) BS02 dna ? GO:0000786 ... P06899 31793981
    501610 6kvd:E (2.21) BS01 dna ? GO:0000786 ... P68431 31793981
    501611 6kvd:E (2.21) BS02 dna ? GO:0000786 ... P68431 31793981
    501612 6kvd:F (2.21) BS01 dna ? GO:0000781 ... P62805 31793981
    501613 6kvd:F (2.21) BS02 dna ? GO:0000781 ... P62805 31793981
    501614 6kvd:G (2.21) BS01 dna ? GO:0000786 ... Q9BTM1 31793981
    501615 6kvd:G (2.21) BS02 dna ? GO:0000786 ... Q9BTM1 31793981
    501616 6kvd:H (2.21) BS01 dna ? GO:0000786 ... P06899 31793981
    501617 6kvd:H (2.21) BS02 dna ? GO:0000786 ... P06899 31793981
    501618 6kvf:A (2.79) BS01 peptide N/A N/A N/A 33953162
    501619 6kvf:C (2.79) BS01 peptide N/A N/A N/A 33953162
    501620 6kvf:H (2.79) BS01 peptide N/A N/A N/A 33953162
    501621 6kvf:L (2.79) BS01 peptide N/A N/A N/A 33953162
    501622 6kvh:A (1.2) BS01 MAN N/A GO:0004650 ... N/A 33404235
    501623 6kvi:A (2.598) BS01 UDP 2.4.1.- GO:0008194 ... Q6VAB4 33404544
    501624 6kvj:A (2.499) BS01 UDX 2.4.1.- GO:0008194 ... Q6VAB4 33404544
    501625 6kvk:A (2.397) BS01 UDP 2.4.1.- GO:0008194 ... Q6VAB4 33404544
    501626 6kvk:A (2.397) BS02 DX0 2.4.1.- GO:0008194 ... Q6VAB4 33404544
    501627 6kvl:A (1.998) BS01 UDP 2.4.1.- GO:0008194 ... Q6VAB4 33404544
    501628 6kvl:A (1.998) BS02 AUO 2.4.1.- GO:0008194 ... Q6VAB4 33404544
    501629 6kvm:A (1.897) BS01 peptide ? GO:0006955 ... Q4U5Z6 32034060
    501630 6kvm:B (1.897) BS01 peptide ? GO:0006955 ... Q4U600 32034060
    501631 6kvo:A (2.5) BS01 dna ? GO:0008821 ... A0A1S4CVP6 32184398
    501632 6kvo:A (2.5) BS02 dna ? GO:0008821 ... A0A1S4CVP6 32184398
    501633 6kvo:A (2.5) BS03 dna ? GO:0008821 ... A0A1S4CVP6 32184398
    501634 6kvo:A (2.5) BS04 MG ? GO:0008821 ... A0A1S4CVP6 32184398
    501635 6kvo:B (2.5) BS01 dna ? GO:0008821 ... A0A1S4CVP6 32184398
    501636 6kvo:B (2.5) BS02 dna ? GO:0008821 ... A0A1S4CVP6 32184398
    501637 6kvo:B (2.5) BS03 dna ? GO:0008821 ... A0A1S4CVP6 32184398
    501638 6kvo:B (2.5) BS04 MG ? GO:0008821 ... A0A1S4CVP6 32184398
    501639 6kvp:A (1.4) BS01 GDP ? GO:0003924 ... Q6GHP9 31882782
    501640 6kvp:A (1.4) BS02 CA ? GO:0003924 ... Q6GHP9 31882782
    501641 6kvp:A (1.4) BS03 ZI1 ? GO:0003924 ... Q6GHP9 31882782
    501642 6kvq:A (1.6) BS01 GDP ? GO:0003924 ... Q6GHP9 31882782
    501643 6kvq:A (1.6) BS02 CA ? GO:0003924 ... Q6GHP9 31882782
    501644 6kvq:A (1.6) BS03 DVX ? GO:0003924 ... Q6GHP9 31882782 MOAD: Kd=0.88uM
    501645 6kvs:A (2.3) BS01 OAX 2.3.1.180 GO:0004315 ... A7X0K2 N/A
    501646 6kvs:B (2.3) BS01 OAX 2.3.1.180 GO:0004315 ... A7X0K2 N/A
    501647 6kvv:A (1.19) BS01 XYP 3.2.1.8 GO:0004553 ... P36217 N/A
    501648 6kvv:A (1.19) BS02 XYP 3.2.1.8 GO:0004553 ... P36217 N/A
    501649 6kvv:A (1.19) BS03 XYP 3.2.1.8 GO:0004553 ... P36217 N/A
    501650 6kvw:A (2.25) BS01 MG ? GO:0004792 ... B3ECE3 N/A
    501651 6kvw:A (2.25) BS02 CA ? GO:0004792 ... B3ECE3 N/A
    501652 6kvw:A (2.25) BS03 AVJ ? GO:0004792 ... B3ECE3 N/A
    501653 6kvw:B (2.25) BS01 MG ? GO:0004792 ... B3ECE3 N/A
    501654 6kvw:B (2.25) BS02 MG ? GO:0004792 ... B3ECE3 N/A
    501655 6kvw:B (2.25) BS03 AVJ ? GO:0004792 ... B3ECE3 N/A
    501656 6kvy:A (1.78) BS01 AVJ ? GO:0004792 ... B3ECE3 N/A
    501657 6kvy:A (1.78) BS02 MG ? GO:0004792 ... B3ECE3 N/A
    501658 6kvz:A (2.18) BS01 AVJ ? GO:0004792 ... B3ECE3 N/A
    501659 6kvz:A (2.18) BS02 MG ? GO:0004792 ... B3ECE3 N/A
    501660 6kvz:A (2.18) BS03 MG ? GO:0004792 ... B3ECE3 N/A
    501661 6kw0:A (2.8) BS01 MG ? GO:0004792 ... B3ECE3 N/A
    501662 6kw0:A (2.8) BS02 LW8 ? GO:0004792 ... B3ECE3 N/A
    501663 6kw0:B (2.8) BS01 MG ? GO:0004792 ... B3ECE3 N/A
    501664 6kw0:B (2.8) BS02 LW8 ? GO:0004792 ... B3ECE3 N/A
    501665 6kw1:A (1.77521) BS01 ZN 3.5.2.6 N/A Q9K2N0 31906402
    501666 6kw1:A (1.77521) BS02 ZN 3.5.2.6 N/A Q9K2N0 31906402
    501667 6kw1:A (1.77521) BS03 MG 3.5.2.6 N/A Q9K2N0 31906402
    501668 6kw1:A (1.77521) BS04 9RX 3.5.2.6 N/A Q9K2N0 31906402
    501669 6kw1:B (1.77521) BS01 ZN 3.5.2.6 N/A Q9K2N0 31906402
    501670 6kw1:B (1.77521) BS02 ZN 3.5.2.6 N/A Q9K2N0 31906402
    501671 6kw1:B (1.77521) BS03 MG 3.5.2.6 N/A Q9K2N0 31906402
    501672 6kw1:B (1.77521) BS04 9RX 3.5.2.6 N/A Q9K2N0 31906402
    501673 6kw3:B (7.13) BS01 dna ? GO:0000786 ... P62799 31672915
    501674 6kw3:B (7.13) BS02 dna ? GO:0000786 ... P62799 31672915
    501675 6kw3:N (7.13) BS01 dna ? GO:0000786 ... P84233 31672915
    501676 6kw3:N (7.13) BS02 dna ? GO:0000786 ... P84233 31672915
    501677 6kw3:O (7.13) BS01 dna ? GO:0000786 ... P06897 31672915
    501678 6kw3:O (7.13) BS02 dna ? GO:0000786 ... P06897 31672915
    501679 6kw3:P (7.13) BS01 dna ? GO:0000786 ... P02281 31672915
    501680 6kw3:P (7.13) BS02 dna ? GO:0000786 ... P02281 31672915
    501681 6kw3:Q (7.13) BS01 dna ? GO:0000786 ... P84233 31672915
    501682 6kw3:Q (7.13) BS02 dna ? GO:0000786 ... P84233 31672915
    501683 6kw3:R (7.13) BS01 dna ? GO:0000786 ... P62799 31672915
    501684 6kw3:R (7.13) BS02 dna ? GO:0000786 ... P62799 31672915
    501685 6kw3:S (7.13) BS01 dna ? GO:0000786 ... P06897 31672915
    501686 6kw3:S (7.13) BS02 dna ? GO:0000786 ... P06897 31672915
    501687 6kw3:T (7.13) BS01 dna ? GO:0000786 ... P02281 31672915
    501688 6kw3:T (7.13) BS02 dna ? GO:0000786 ... P02281 31672915
    501689 6kw3:Y (7.13) BS01 dna 3.6.4.12 GO:0000775 ... P32597 31672915
    501690 6kw3:Y (7.13) BS02 dna 3.6.4.12 GO:0000775 ... P32597 31672915
    501691 6kw4:B (7.55) BS01 dna ? GO:0000786 ... P62799 31672915
    501692 6kw4:B (7.55) BS02 dna ? GO:0000786 ... P62799 31672915
    501693 6kw4:H (7.55) BS01 ZN ? GO:0000785 ... P43609 31672915
    501694 6kw4:N (7.55) BS01 dna ? GO:0000786 ... P84233 31672915
    501695 6kw4:N (7.55) BS02 dna ? GO:0000786 ... P84233 31672915
    501696 6kw4:O (7.55) BS01 dna ? GO:0000786 ... P06897 31672915
    501697 6kw4:O (7.55) BS02 dna ? GO:0000786 ... P06897 31672915
    501698 6kw4:P (7.55) BS01 dna ? GO:0000786 ... P02281 31672915
    501699 6kw4:P (7.55) BS02 dna ? GO:0000786 ... P02281 31672915
    501700 6kw4:Q (7.55) BS01 dna ? GO:0000786 ... P84233 31672915
    501701 6kw4:Q (7.55) BS02 dna ? GO:0000786 ... P84233 31672915
    501702 6kw4:R (7.55) BS01 dna ? GO:0000786 ... P62799 31672915
    501703 6kw4:R (7.55) BS02 dna ? GO:0000786 ... P62799 31672915
    501704 6kw4:S (7.55) BS01 dna ? GO:0000786 ... P06897 31672915
    501705 6kw4:S (7.55) BS02 dna ? GO:0000786 ... P06897 31672915
    501706 6kw4:T (7.55) BS01 dna ? GO:0000786 ... P02281 31672915
    501707 6kw4:T (7.55) BS02 dna ? GO:0000786 ... P02281 31672915
    501708 6kw4:Y (7.55) BS01 dna 3.6.4.12 GO:0000775 ... P32597 31672915
    501709 6kw4:Y (7.55) BS02 dna 3.6.4.12 GO:0000775 ... P32597 31672915
    501710 6kw5:H (10.13) BS01 ZN ? GO:0000785 ... P43609 N/A
    501711 6kw5:O (10.13) BS01 dna ? GO:0000786 ... P06897 N/A
    501712 6kw5:O (10.13) BS02 dna ? GO:0000786 ... P06897 N/A
    501713 6kw5:Q (10.13) BS01 dna 3.6.4.12 GO:0000775 ... P32597 N/A
    501714 6kw5:Q (10.13) BS02 dna 3.6.4.12 GO:0000775 ... P32597 N/A
    501715 6kw5:R (10.13) BS01 dna ? GO:0000786 ... P84233 N/A
    501716 6kw5:R (10.13) BS02 dna ? GO:0000786 ... P84233 N/A
    501717 6kw5:S (10.13) BS01 dna ? GO:0000786 ... P62799 N/A
    501718 6kw5:S (10.13) BS02 dna ? GO:0000786 ... P62799 N/A
    501719 6kw5:T (10.13) BS01 dna ? GO:0000786 ... P06897 N/A
    501720 6kw5:T (10.13) BS02 dna ? GO:0000786 ... P06897 N/A
    501721 6kw5:U (10.13) BS01 dna N/A GO:0000786 ... N/A N/A
    501722 6kw5:V (10.13) BS01 dna ? GO:0000786 ... P84233 N/A
    501723 6kw5:V (10.13) BS02 dna ? GO:0000786 ... P84233 N/A
    501724 6kw5:W (10.13) BS01 dna ? GO:0000786 ... P62799 N/A
    501725 6kw5:Y (10.13) BS01 dna N/A GO:0000786 ... N/A N/A
    501726 6kw5:Y (10.13) BS02 dna N/A GO:0000786 ... N/A N/A
    501727 6kw6:A (1.895) BS01 ZN N/A GO:0003824 ... N/A N/A
    501728 6kw6:B (1.895) BS01 ZN N/A GO:0003824 ... N/A N/A
    501729 6kw7:A (3.02) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 31961685
    501730 6kw7:A (3.02) BS02 DYC 1.13.11.52 GO:0002376 ... P14902 31961685 BindingDB: IC50=380nM
    501731 6kw7:B (3.02) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 31961685
    501732 6kw7:B (3.02) BS02 DYC 1.13.11.52 GO:0002376 ... P14902 31961685 BindingDB: IC50=380nM
    501733 6kwa:A (2.09429) BS01 MG ? N/A Q9XI75 32980521
    501734 6kwa:B (2.09429) BS01 MG ? N/A Q9XI75 32980521
    501735 6kwb:A (2.51839) BS01 MG ? N/A Q9XI75 32980521
    501736 6kwb:A (2.51839) BS02 AKG ? N/A Q9XI75 32980521
    501737 6kwb:B (2.51839) BS01 MG ? N/A Q9XI75 32980521
    501738 6kwd:A (1.298) BS01 XYP 3.2.1.8 GO:0004553 ... P36217 33128114
    501739 6kwd:A (1.298) BS02 XYP 3.2.1.8 GO:0004553 ... P36217 33128114
    501740 6kwf:A (1.22) BS01 XYP 3.2.1.8 GO:0004553 ... P36217 33128114
    501741 6kwf:A (1.22) BS02 XYP 3.2.1.8 GO:0004553 ... P36217 33128114
    501742 6kwf:A (1.22) BS03 XYP 3.2.1.8 GO:0004553 ... P36217 33128114
    501743 6kwf:A (1.22) BS04 XYP 3.2.1.8 GO:0004553 ... P36217 33128114
    501744 6kwg:A (1.694) BS01 XYP 3.2.1.8 GO:0004553 ... P36217 33128114
    501745 6kwg:A (1.694) BS02 XYP 3.2.1.8 GO:0004553 ... P36217 33128114
    501746 6kwg:A (1.694) BS03 XYP 3.2.1.8 GO:0004553 ... P36217 33128114
    501747 6kwh:A (1.808) BS01 XYP 3.2.1.8 GO:0004553 ... P36217 N/A
    501748 6kwh:A (1.808) BS02 XYP 3.2.1.8 GO:0004553 ... P36217 N/A
    501749 6kwh:A (1.808) BS03 XYP 3.2.1.8 GO:0004553 ... P36217 N/A
    501750 6kwk:A (2.5) BS01 peptide ? N/A A0A0F6N4U7 33717070
    501751 6kwl:A (1.8) BS01 peptide ? N/A A0A0F6N4U7 33717070
    501752 6kwn:A (2.4) BS01 peptide ? N/A B1PJU7 33717070
    501753 6kwo:A (1.803) BS01 peptide ? N/A B1PJU7 33717070
    501754 6kwq:A (1.76) BS01 rna 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... M4QLY4 31863580
    501755 6kwq:A (1.76) BS02 rna 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... M4QLY4 31863580
    501756 6kwq:A (1.76) BS03 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... M4QLY4 31863580
    501757 6kwr:A (2.5) BS01 rna 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... M4QLY4 31863580
    501758 6kwr:A (2.5) BS02 rna 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... M4QLY4 31863580
    501759 6kwr:A (2.5) BS03 ZN 2.7.7.48
    3.4.22.28
    3.4.22.29
    3.6.1.15
    GO:0003723 ... M4QLY4 31863580
    501760 6kwt:A (3.02) BS01 NDP ? GO:0000166 ... Q5ABT9 N/A
    501761 6kwx:A (3.75) BS01 K0W ? GO:0000502 ... Q14997 32134919
    501762 6kwx:A (3.75) BS02 IHP ? GO:0000502 ... Q14997 32134919
    501763 6kwy:c (2.72) BS01 K0W ? GO:0000502 ... Q14997 32134919
    501764 6kwy:c (2.72) BS02 IHP ? GO:0000502 ... Q14997 32134919
    501765 6kwz:A (1.551) BS01 CA ? GO:0051015 ... Q94707 31863323
    501766 6kwz:B (1.551) BS01 CA ? GO:0051015 ... Q94707 31863323
    501767 6kx1:A (1.773) BS01 peptide N/A N/A N/A N/A
    501768 6kx1:B (1.773) BS01 peptide N/A N/A N/A N/A
    501769 6kx2:A (1.454) BS01 GDP 3.6.5.2 GO:0000902 ... P61586 32714746
    501770 6kx3:A (1.981) BS01 GDP 3.6.5.2 GO:0000902 ... P61586 32714746
    501771 6kx3:A (1.981) BS02 8ZO 3.6.5.2 GO:0000902 ... P61586 32714746
    501772 6kx5:A (2.0) BS01 DYR ? N/A P97784 32231341
    501773 6kx6:A (2.0) BS01 DYU ? N/A P97784 32231341
    501774 6kx6:B (2.0) BS01 DYU ? N/A P97784 32231341
    501775 6kx7:A (2.1) BS01 DYX ? N/A P97784 32231341
    501776 6kx8:A (2.25) BS01 DYX ? N/A Q9R194 32231341
    501777 6kx8:B (2.25) BS01 DYX ? N/A Q9R194 32231341
    501778 6kx9:A (2.902) BS01 peptide ? N/A Q9GIP6 32152225
    501779 6kxa:A (1.23) BS01 GTR ? GO:0030246 ... P17931 32909036
    501780 6kxb:A (1.5) BS01 GTR ? GO:0030246 ... P17931 32909036
    501781 6kxf:A (1.98) BS01 DYF ? GO:0004315 ... A0A1Y1BW67 32367018
    501782 6kxh:A (1.7804) BS01 DY9 3.3.2.3 GO:0003824 ... A0A0K2AJY3 33004437
    501783 6kxh:B (1.7804) BS01 DY9 3.3.2.3 GO:0003824 ... A0A0K2AJY3 33004437
    501784 6kxh:C (1.7804) BS01 DY9 3.3.2.3 GO:0003824 ... A0A0K2AJY3 33004437
    501785 6kxh:D (1.7804) BS01 DY9 3.3.2.3 GO:0003824 ... A0A0K2AJY3 33004437
    501786 6kxi:A (1.38) BS01 ZN 3.5.2.6 GO:0046872 ... E5KIY2 32184250
    501787 6kxi:A (1.38) BS02 ZN 3.5.2.6 GO:0046872 ... E5KIY2 32184250
    501788 6kxi:A (1.38) BS03 ZN 3.5.2.6 GO:0046872 ... E5KIY2 32184250
    501789 6kxi:A (1.38) BS04 NO9 3.5.2.6 GO:0046872 ... E5KIY2 32184250
    501790 6kxi:B (1.38) BS01 ZN 3.5.2.6 GO:0046872 ... E5KIY2 32184250
    501791 6kxi:B (1.38) BS02 ZN 3.5.2.6 GO:0046872 ... E5KIY2 32184250
    501792 6kxi:B (1.38) BS03 ZN 3.5.2.6 GO:0046872 ... E5KIY2 32184250
    501793 6kxi:B (1.38) BS04 NO9 3.5.2.6 GO:0046872 ... E5KIY2 32184250
    501794 6kxk:D (2.5) BS01 CA ? GO:0005544 ... Q941L3 N/A
    501795 6kxk:F (2.5) BS01 CA ? GO:0005544 ... Q941L3 N/A
    501796 6kxl:A (1.35) BS01 NAG ? GO:0004553 ... F8WSX2 N/A
    501797 6kxl:A (1.35) BS02 NAG ? GO:0004553 ... F8WSX2 N/A
    501798 6kxl:A (1.35) BS03 MXE ? GO:0004553 ... F8WSX2 N/A
    501799 6kxl:A (1.35) BS04 NAG ? GO:0004553 ... F8WSX2 N/A
    501800 6kxl:B (1.35) BS01 NAG ? GO:0004553 ... F8WSX2 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).