SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    502401 6l35:I (3.23) BS01 peptide ? GO:0009507 ... Q6YXR3 33589616
    502402 6l35:I (3.23) BS02 CLA ? GO:0009507 ... Q6YXR3 33589616
    502403 6l35:J (3.23) BS01 CLA ? GO:0009507 ... Q6YXM2 33589616
    502404 6l35:J (3.23) BS02 CLA ? GO:0009507 ... Q6YXM2 33589616
    502405 6l35:J (3.23) BS03 CLA ? GO:0009507 ... Q6YXM2 33589616
    502406 6l35:J (3.23) BS04 CLA ? GO:0009507 ... Q6YXM2 33589616
    502407 6l35:K (3.23) BS01 CLA ? GO:0009522 ... A0A2K1KU02 33589616
    502408 6l35:K (3.23) BS02 CLA ? GO:0009522 ... A0A2K1KU02 33589616
    502409 6l35:K (3.23) BS03 CLA ? GO:0009522 ... A0A2K1KU02 33589616
    502410 6l35:K (3.23) BS04 CLA ? GO:0009522 ... A0A2K1KU02 33589616
    502411 6l35:L (3.23) BS01 CLA ? GO:0009522 ... A0A2K1IAD0 33589616
    502412 6l35:L (3.23) BS02 CLA ? GO:0009522 ... A0A2K1IAD0 33589616
    502413 6l35:L (3.23) BS03 CLA ? GO:0009522 ... A0A2K1IAD0 33589616
    502414 6l35:L (3.23) BS04 CLA ? GO:0009522 ... A0A2K1IAD0 33589616
    502415 6l35:L (3.23) BS05 CLA ? GO:0009522 ... A0A2K1IAD0 33589616
    502416 6l36:A (3.301) BS01 GW9 ? GO:0003677 ... Q07869 33205029
    502417 6l36:A (3.301) BS02 GW9 ? GO:0003677 ... Q07869 33205029
    502418 6l36:A (3.301) BS03 GW9 ? GO:0003677 ... Q07869 33205029
    502419 6l36:A (3.301) BS04 F5A ? GO:0003677 ... Q07869 33205029 BindingDB: EC50=30000nM, IC50=>10000nM, Ki=35000nM
    502420 6l36:B (3.301) BS01 GW9 ? GO:0003677 ... Q07869 33205029
    502421 6l36:B (3.301) BS02 GW9 ? GO:0003677 ... Q07869 33205029
    502422 6l36:B (3.301) BS03 GW9 ? GO:0003677 ... Q07869 33205029
    502423 6l36:B (3.301) BS04 F5A ? GO:0003677 ... Q07869 33205029 BindingDB: EC50=30000nM, IC50=>10000nM, Ki=35000nM
    502424 6l37:A (2.91) BS01 GW9 ? GO:0003677 ... Q07869 33205029
    502425 6l37:A (2.91) BS02 GW9 ? GO:0003677 ... Q07869 33205029
    502426 6l37:A (2.91) BS03 GW9 ? GO:0003677 ... Q07869 33205029
    502427 6l37:A (2.91) BS04 C5F ? GO:0003677 ... Q07869 33205029 BindingDB: EC50=900nM
    502428 6l37:B (2.91) BS01 GW9 ? GO:0003677 ... Q07869 33205029
    502429 6l37:B (2.91) BS02 GW9 ? GO:0003677 ... Q07869 33205029
    502430 6l37:B (2.91) BS03 GW9 ? GO:0003677 ... Q07869 33205029
    502431 6l37:B (2.91) BS04 C5F ? GO:0003677 ... Q07869 33205029 BindingDB: EC50=900nM
    502432 6l38:A (2.761) BS01 GW9 ? GO:0003677 ... Q07869 33205029
    502433 6l38:A (2.761) BS02 GW9 ? GO:0003677 ... Q07869 33205029
    502434 6l38:B (2.761) BS01 GW9 ? GO:0003677 ... Q07869 33205029
    502435 6l38:B (2.761) BS02 GW9 ? GO:0003677 ... Q07869 33205029
    502436 6l39:A (2.97) BS01 HEM ? GO:0004497 ... A0A0A0NSZ7 32822639
    502437 6l39:B (2.97) BS01 HEM ? GO:0004497 ... A0A0A0NSZ7 32822639
    502438 6l3a:A (3.0) BS01 HEM ? GO:0004497 ... A0A0A0NSZ7 32822639
    502439 6l3a:B (3.0) BS01 HEM ? GO:0004497 ... A0A0A0NSZ7 32822639
    502440 6l3a:B (3.0) BS02 E53 ? GO:0004497 ... A0A0A0NSZ7 32822639
    502441 6l3e:A (1.6) BS01 GLC ? GO:0008643 ... P19576 N/A
    502442 6l3e:A (1.6) BS02 GLC ? GO:0008643 ... P19576 N/A
    502443 6l3e:A (1.6) BS03 GLC ? GO:0008643 ... P19576 N/A
    502444 6l3e:A (1.6) BS04 GLC ? GO:0008643 ... P19576 N/A
    502445 6l3e:A (1.6) BS05 2ME ? GO:0008643 ... P19576 N/A
    502446 6l3e:A (1.6) BS06 2ME ? GO:0008643 ... P19576 N/A
    502447 6l3e:A (1.6) BS07 MG ? GO:0008643 ... P19576 N/A
    502448 6l3g:A (3.3) BS01 dna ? GO:0000166 ... A0A373G551 31772234
    502449 6l3g:A (3.3) BS02 ADP ? GO:0000166 ... A0A373G551 31772234
    502450 6l3g:A (3.3) BS03 ALF ? GO:0000166 ... A0A373G551 31772234
    502451 6l3g:B (3.3) BS01 dna ? GO:0000166 ... A0A373G551 31772234
    502452 6l3g:B (3.3) BS02 ADP ? GO:0000166 ... A0A373G551 31772234
    502453 6l3g:B (3.3) BS03 ALF ? GO:0000166 ... A0A373G551 31772234
    502454 6l3h:A (3.06) BS01 HEM 1.7.99.7 GO:0004129 ... C6S880 32431824
    502455 6l3h:A (3.06) BS02 HEM 1.7.99.7 GO:0004129 ... C6S880 32431824
    502456 6l3h:A (3.06) BS03 FE 1.7.99.7 GO:0004129 ... C6S880 32431824
    502457 6l3h:A (3.06) BS04 CA 1.7.99.7 GO:0004129 ... C6S880 32431824
    502458 6l3h:B (3.06) BS01 HEM 1.7.99.7 GO:0004129 ... C6S880 32431824
    502459 6l3h:B (3.06) BS02 HEM 1.7.99.7 GO:0004129 ... C6S880 32431824
    502460 6l3h:B (3.06) BS03 FE 1.7.99.7 GO:0004129 ... C6S880 32431824
    502461 6l3h:B (3.06) BS04 CA 1.7.99.7 GO:0004129 ... C6S880 32431824
    502462 6l3m:A (1.77) BS01 E5U ? GO:0016740 ... Q8KUH4 31777147
    502463 6l3m:B (1.77) BS01 E5U ? GO:0016740 ... Q8KUH4 31777147
    502464 6l3m:C (1.77) BS01 E5U ? GO:0016740 ... Q8KUH4 31777147
    502465 6l3m:D (1.77) BS01 E5U ? GO:0016740 ... Q8KUH4 31777147
    502466 6l3n:A (1.83) BS01 DXX ? GO:0016740 ... A0A1U9Y7T8 31777147
    502467 6l3n:B (1.83) BS01 DXX ? GO:0016740 ... A0A1U9Y7T8 31777147
    502468 6l3n:C (1.83) BS01 DXX ? GO:0016740 ... A0A1U9Y7T8 31777147
    502469 6l3n:D (1.83) BS01 DXX ? GO:0016740 ... A0A1U9Y7T8 31777147
    502470 6l3p:A (2.5) BS01 COA 4.1.2.41
    4.2.1.101
    GO:0003824 ... Q88HJ8 N/A
    502471 6l3p:B (2.5) BS01 COA 4.1.2.41
    4.2.1.101
    GO:0003824 ... Q88HJ8 N/A
    502472 6l3r:A (2.0) BS01 TTP 1.17.4.1 GO:0004748 ... P23921 N/A
    502473 6l3r:A (2.0) BS02 E4X 1.17.4.1 GO:0004748 ... P23921 N/A
    502474 6l3r:A (2.0) BS03 TTP 1.17.4.1 GO:0004748 ... P23921 N/A
    502475 6l3r:E (2.0) BS01 TTP 1.17.4.1 GO:0004748 ... P23921 N/A
    502476 6l3r:E (2.0) BS02 E4X 1.17.4.1 GO:0004748 ... P23921 N/A
    502477 6l3r:E (2.0) BS03 TTP 1.17.4.1 GO:0004748 ... P23921 N/A
    502478 6l3s:A (1.7) BS01 ZN 3.5.2.6 GO:0008270 ... A0A286S0G7 N/A
    502479 6l3s:A (1.7) BS02 ZN 3.5.2.6 GO:0008270 ... A0A286S0G7 N/A
    502480 6l3s:B (1.7) BS01 ZN 3.5.2.6 GO:0008270 ... A0A286S0G7 N/A
    502481 6l3s:B (1.7) BS02 ZN 3.5.2.6 GO:0008270 ... A0A286S0G7 N/A
    502482 6l3t:A (2.34) BS01 LMN ? GO:0005243 ... Q8NFK1 32923625
    502483 6l3t:B (2.34) BS01 LMN ? GO:0005243 ... Q8NFK1 32923625
    502484 6l3t:C (2.34) BS01 LMN ? GO:0005243 ... Q8NFK1 32923625
    502485 6l3t:D (2.34) BS01 LMN ? GO:0005243 ... Q8NFK1 32923625
    502486 6l3t:E (2.34) BS01 LMN ? GO:0005243 ... Q8NFK1 32923625
    502487 6l3t:F (2.34) BS01 LMN ? GO:0005243 ... Q8NFK1 32923625
    502488 6l3u:A (2.53) BS01 CA ? GO:0005243 ... Q8NFK1 32923625
    502489 6l3u:A (2.53) BS02 CA ? GO:0005243 ... Q8NFK1 32923625
    502490 6l3u:B (2.53) BS01 CA ? GO:0005243 ... Q8NFK1 32923625
    502491 6l3u:B (2.53) BS02 CA ? GO:0005243 ... Q8NFK1 32923625
    502492 6l3u:C (2.53) BS01 CA ? GO:0005243 ... Q8NFK1 32923625
    502493 6l3u:C (2.53) BS02 CA ? GO:0005243 ... Q8NFK1 32923625
    502494 6l3u:D (2.53) BS01 CA ? GO:0005243 ... Q8NFK1 32923625
    502495 6l3u:D (2.53) BS02 CA ? GO:0005243 ... Q8NFK1 32923625
    502496 6l3u:E (2.53) BS01 CA ? GO:0005243 ... Q8NFK1 32923625
    502497 6l3u:E (2.53) BS02 CA ? GO:0005243 ... Q8NFK1 32923625
    502498 6l3u:F (2.53) BS01 CA ? GO:0005243 ... Q8NFK1 32923625
    502499 6l3u:F (2.53) BS02 CA ? GO:0005243 ... Q8NFK1 32923625
    502500 6l3w:A (2.6) BS01 FE N/A GO:0004462 ... N/A 31771973
    502501 6l3x:A (2.3054) BS01 E4U 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502502 6l3x:B (2.3054) BS01 E4U 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502503 6l3x:C (2.3054) BS01 E4U 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502504 6l3x:D (2.3054) BS01 E4U 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502505 6l3x:E (2.3054) BS01 E4U 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502506 6l3x:F (2.3054) BS01 E4U 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502507 6l3x:G (2.3054) BS01 E4U 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502508 6l3x:H (2.3054) BS01 E4U 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502509 6l3x:I (2.3054) BS01 E4U 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502510 6l3x:J (2.3054) BS01 E4U 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502511 6l3x:K (2.3054) BS01 E4U 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502512 6l3x:L (2.3054) BS01 E4U 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502513 6l3x:M (2.3054) BS01 E4U 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502514 6l3x:N (2.3054) BS01 E4U 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502515 6l3y:A (3.1) BS01 LYS 6.1.1.6 GO:0000166 ... Q8IDJ8 N/A
    502516 6l3y:A (3.1) BS02 E5C 6.1.1.6 GO:0000166 ... Q8IDJ8 N/A
    502517 6l3y:B (3.1) BS01 LYS 6.1.1.6 GO:0000166 ... Q8IDJ8 N/A
    502518 6l3y:B (3.1) BS02 E5C 6.1.1.6 GO:0000166 ... Q8IDJ8 N/A
    502519 6l40:A (2.209) BS01 FN3 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502520 6l40:B (2.209) BS01 FN3 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502521 6l40:C (2.209) BS01 FN3 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502522 6l40:D (2.209) BS01 FN3 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502523 6l40:E (2.209) BS01 FN3 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502524 6l40:F (2.209) BS01 FN3 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502525 6l40:G (2.209) BS01 FN3 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502526 6l40:H (2.209) BS01 FN3 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502527 6l40:I (2.209) BS01 FN3 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502528 6l40:J (2.209) BS01 FN3 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502529 6l40:K (2.209) BS01 FN3 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502530 6l40:L (2.209) BS01 FN3 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502531 6l40:M (2.209) BS01 FN3 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502532 6l40:N (2.209) BS01 FN3 3.4.21.92 GO:0004176 ... Q2YSF8 32031798
    502533 6l46:A (1.3) BS01 CU N/A N/A N/A 32041886
    502534 6l46:A (1.3) BS02 CU N/A N/A N/A 32041886
    502535 6l46:A (1.3) BS03 CU N/A N/A N/A 32041886
    502536 6l47:A (3.5) BS01 E5L 2.3.1.26 GO:0008374 ... P35610 32424158 BindingDB: IC50=200nM
    502537 6l47:A (3.5) BS02 CLR 2.3.1.26 GO:0008374 ... P35610 32424158
    502538 6l47:A (3.5) BS03 CLR 2.3.1.26 GO:0008374 ... P35610 32424158
    502539 6l47:B (3.5) BS01 CLR 2.3.1.26 GO:0008374 ... P35610 32424158
    502540 6l47:B (3.5) BS02 E5L 2.3.1.26 GO:0008374 ... P35610 32424158 BindingDB: IC50=200nM
    502541 6l47:B (3.5) BS03 CLR 2.3.1.26 GO:0008374 ... P35610 32424158
    502542 6l48:A (3.5) BS01 CLR 2.3.1.26 GO:0008374 ... P35610 32424158
    502543 6l48:B (3.5) BS01 CLR 2.3.1.26 GO:0008374 ... P35610 32424158
    502544 6l49:A (18.9) BS01 dna ? GO:0000132 ... P49450 31711756
    502545 6l49:A (18.9) BS02 dna ? GO:0000132 ... P49450 31711756
    502546 6l49:B (18.9) BS01 dna ? GO:0000781 ... P62805 31711756
    502547 6l49:B (18.9) BS02 dna ? GO:0000781 ... P62805 31711756
    502548 6l49:C (18.9) BS01 dna ? GO:0000786 ... P04908 31711756
    502549 6l49:C (18.9) BS02 dna ? GO:0000786 ... P04908 31711756
    502550 6l49:D (18.9) BS01 dna ? GO:0000786 ... P06899 31711756
    502551 6l49:D (18.9) BS02 dna ? GO:0000786 ... P06899 31711756
    502552 6l49:E (18.9) BS01 dna ? GO:0000132 ... P49450 31711756
    502553 6l49:E (18.9) BS02 dna ? GO:0000132 ... P49450 31711756
    502554 6l49:F (18.9) BS01 dna ? GO:0000781 ... P62805 31711756
    502555 6l49:F (18.9) BS02 dna ? GO:0000781 ... P62805 31711756
    502556 6l49:G (18.9) BS01 dna ? GO:0000786 ... P04908 31711756
    502557 6l49:G (18.9) BS02 dna ? GO:0000786 ... P04908 31711756
    502558 6l49:H (18.9) BS01 dna ? GO:0000786 ... P06899 31711756
    502559 6l49:H (18.9) BS02 dna ? GO:0000786 ... P06899 31711756
    502560 6l49:K (18.9) BS01 dna ? GO:0000786 ... P68431 31711756
    502561 6l49:K (18.9) BS02 dna ? GO:0000786 ... P68431 31711756
    502562 6l49:L (18.9) BS01 dna ? GO:0000781 ... P62805 31711756
    502563 6l49:L (18.9) BS02 dna ? GO:0000781 ... P62805 31711756
    502564 6l49:M (18.9) BS01 dna ? GO:0000786 ... P04908 31711756
    502565 6l49:M (18.9) BS02 dna ? GO:0000786 ... P04908 31711756
    502566 6l49:N (18.9) BS01 dna ? GO:0000786 ... P06899 31711756
    502567 6l49:N (18.9) BS02 dna ? GO:0000786 ... P06899 31711756
    502568 6l49:O (18.9) BS01 dna ? GO:0000786 ... P68431 31711756
    502569 6l49:O (18.9) BS02 dna ? GO:0000786 ... P68431 31711756
    502570 6l49:P (18.9) BS01 dna ? GO:0000781 ... P62805 31711756
    502571 6l49:P (18.9) BS02 dna ? GO:0000781 ... P62805 31711756
    502572 6l49:Q (18.9) BS01 dna ? GO:0000786 ... P04908 31711756
    502573 6l49:Q (18.9) BS02 dna ? GO:0000786 ... P04908 31711756
    502574 6l49:R (18.9) BS01 dna ? GO:0000786 ... P06899 31711756
    502575 6l49:R (18.9) BS02 dna ? GO:0000786 ... P06899 31711756
    502576 6l49:S (18.9) BS01 dna ? GO:0000786 ... P68431 31711756
    502577 6l49:S (18.9) BS02 dna ? GO:0000786 ... P68431 31711756
    502578 6l49:T (18.9) BS01 dna ? GO:0000781 ... P62805 31711756
    502579 6l49:T (18.9) BS02 dna ? GO:0000781 ... P62805 31711756
    502580 6l49:U (18.9) BS01 dna ? GO:0000786 ... P04908 31711756
    502581 6l49:U (18.9) BS02 dna ? GO:0000786 ... P04908 31711756
    502582 6l49:V (18.9) BS01 dna ? GO:0000786 ... P06899 31711756
    502583 6l49:V (18.9) BS02 dna ? GO:0000786 ... P06899 31711756
    502584 6l49:W (18.9) BS01 dna ? GO:0000786 ... P68431 31711756
    502585 6l49:W (18.9) BS02 dna ? GO:0000786 ... P68431 31711756
    502586 6l49:X (18.9) BS01 dna ? GO:0000781 ... P62805 31711756
    502587 6l49:X (18.9) BS02 dna ? GO:0000781 ... P62805 31711756
    502588 6l49:Y (18.9) BS01 dna ? GO:0000786 ... P04908 31711756
    502589 6l49:Y (18.9) BS02 dna ? GO:0000786 ... P04908 31711756
    502590 6l49:Z (18.9) BS01 dna ? GO:0000786 ... P06899 31711756
    502591 6l49:Z (18.9) BS02 dna ? GO:0000786 ... P06899 31711756
    502592 6l4a:A (12.3) BS01 dna ? GO:0000786 ... P68431 31711756
    502593 6l4a:A (12.3) BS02 dna ? GO:0000786 ... P68431 31711756
    502594 6l4a:B (12.3) BS01 dna ? GO:0000781 ... P62805 31711756
    502595 6l4a:B (12.3) BS02 dna ? GO:0000781 ... P62805 31711756
    502596 6l4a:C (12.3) BS01 dna ? GO:0000786 ... P04908 31711756
    502597 6l4a:C (12.3) BS02 dna ? GO:0000786 ... P04908 31711756
    502598 6l4a:D (12.3) BS01 dna ? GO:0000786 ... P06899 31711756
    502599 6l4a:D (12.3) BS02 dna ? GO:0000786 ... P06899 31711756
    502600 6l4a:E (12.3) BS01 dna ? GO:0000786 ... P68431 31711756

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).