SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    503201 6l4u:B (2.4) BS13 CLA N/A GO:0009522 ... N/A N/A
    503202 6l4u:B (2.4) BS14 CLA N/A GO:0009522 ... N/A N/A
    503203 6l4u:B (2.4) BS15 CLA N/A GO:0009522 ... N/A N/A
    503204 6l4u:B (2.4) BS16 CLA N/A GO:0009522 ... N/A N/A
    503205 6l4u:B (2.4) BS17 CLA N/A GO:0009522 ... N/A N/A
    503206 6l4u:B (2.4) BS18 CLA N/A GO:0009522 ... N/A N/A
    503207 6l4u:B (2.4) BS19 CLA N/A GO:0009522 ... N/A N/A
    503208 6l4u:B (2.4) BS20 CLA N/A GO:0009522 ... N/A N/A
    503209 6l4u:B (2.4) BS21 CLA N/A GO:0009522 ... N/A N/A
    503210 6l4u:B (2.4) BS22 CLA N/A GO:0009522 ... N/A N/A
    503211 6l4u:B (2.4) BS23 CLA N/A GO:0009522 ... N/A N/A
    503212 6l4u:B (2.4) BS24 CLA N/A GO:0009522 ... N/A N/A
    503213 6l4u:B (2.4) BS25 CLA N/A GO:0009522 ... N/A N/A
    503214 6l4u:B (2.4) BS26 CLA N/A GO:0009522 ... N/A N/A
    503215 6l4u:B (2.4) BS27 CLA N/A GO:0009522 ... N/A N/A
    503216 6l4u:B (2.4) BS28 CLA N/A GO:0009522 ... N/A N/A
    503217 6l4u:B (2.4) BS29 CLA N/A GO:0009522 ... N/A N/A
    503218 6l4u:B (2.4) BS30 CLA N/A GO:0009522 ... N/A N/A
    503219 6l4u:B (2.4) BS31 CLA N/A GO:0009522 ... N/A N/A
    503220 6l4u:B (2.4) BS32 CLA N/A GO:0009522 ... N/A N/A
    503221 6l4u:B (2.4) BS33 CLA N/A GO:0009522 ... N/A N/A
    503222 6l4u:B (2.4) BS34 CLA N/A GO:0009522 ... N/A N/A
    503223 6l4u:B (2.4) BS35 CLA N/A GO:0009522 ... N/A N/A
    503224 6l4u:B (2.4) BS36 CLA N/A GO:0009522 ... N/A N/A
    503225 6l4u:B (2.4) BS37 CLA N/A GO:0009522 ... N/A N/A
    503226 6l4u:B (2.4) BS38 CLA N/A GO:0009522 ... N/A N/A
    503227 6l4u:B (2.4) BS39 CLA N/A GO:0009522 ... N/A N/A
    503228 6l4u:B (2.4) BS40 CLA N/A GO:0009522 ... N/A N/A
    503229 6l4u:B (2.4) BS41 CLA N/A GO:0009522 ... N/A N/A
    503230 6l4u:B (2.4) BS42 CLA N/A GO:0009522 ... N/A N/A
    503231 6l4u:B (2.4) BS43 CLA N/A GO:0009522 ... N/A N/A
    503232 6l4u:B (2.4) BS44 CLA N/A GO:0009522 ... N/A N/A
    503233 6l4u:B (2.4) BS45 CLA N/A GO:0009522 ... N/A N/A
    503234 6l4u:B (2.4) BS46 CLA N/A GO:0009522 ... N/A N/A
    503235 6l4u:B (2.4) BS47 PQN N/A GO:0009522 ... N/A N/A
    503236 6l4u:B (2.4) BS48 CLA N/A GO:0009522 ... N/A N/A
    503237 6l4u:B (2.4) BS49 CLA N/A GO:0009522 ... N/A N/A
    503238 6l4u:B (2.4) BS50 CLA N/A GO:0009522 ... N/A N/A
    503239 6l4u:B (2.4) BS51 CLA N/A GO:0009522 ... N/A N/A
    503240 6l4u:C (2.4) BS01 SF4 N/A GO:0009055 ... N/A N/A
    503241 6l4u:C (2.4) BS02 SF4 N/A GO:0009055 ... N/A N/A
    503242 6l4u:F (2.4) BS01 CLA N/A GO:0009522 ... N/A N/A
    503243 6l4u:F (2.4) BS02 CLA N/A GO:0009522 ... N/A N/A
    503244 6l4u:F (2.4) BS03 CLA N/A GO:0009522 ... N/A N/A
    503245 6l4u:F (2.4) BS04 CLA N/A GO:0009522 ... N/A N/A
    503246 6l4u:F (2.4) BS05 CLA N/A GO:0009522 ... N/A N/A
    503247 6l4u:F (2.4) BS06 CLA N/A GO:0009522 ... N/A N/A
    503248 6l4u:F (2.4) BS07 CLA N/A GO:0009522 ... N/A N/A
    503249 6l4u:I (2.4) BS01 CLA N/A GO:0009522 ... N/A N/A
    503250 6l4u:I (2.4) BS02 CLA N/A GO:0009522 ... N/A N/A
    503251 6l4u:I (2.4) BS03 CLA N/A GO:0009522 ... N/A N/A
    503252 6l4u:J (2.4) BS01 CLA N/A GO:0009522 ... N/A N/A
    503253 6l4u:J (2.4) BS02 CLA N/A GO:0009522 ... N/A N/A
    503254 6l4u:J (2.4) BS03 CLA N/A GO:0009522 ... N/A N/A
    503255 6l4u:J (2.4) BS04 CLA N/A GO:0009522 ... N/A N/A
    503256 6l4u:J (2.4) BS05 CLA N/A GO:0009522 ... N/A N/A
    503257 6l4u:J (2.4) BS06 CLA N/A GO:0009522 ... N/A N/A
    503258 6l4u:L (2.4) BS01 CLA N/A GO:0009522 ... N/A N/A
    503259 6l4u:L (2.4) BS02 CLA N/A GO:0009522 ... N/A N/A
    503260 6l4u:L (2.4) BS03 CLA N/A GO:0009522 ... N/A N/A
    503261 6l4u:L (2.4) BS04 CLA N/A GO:0009522 ... N/A N/A
    503262 6l4u:L (2.4) BS05 CLA N/A GO:0009522 ... N/A N/A
    503263 6l4u:L (2.4) BS06 CLA N/A GO:0009522 ... N/A N/A
    503264 6l4u:L (2.4) BS07 CLA N/A GO:0009522 ... N/A N/A
    503265 6l4u:L (2.4) BS08 CLA N/A GO:0009522 ... N/A N/A
    503266 6l4u:M (2.4) BS01 CLA N/A GO:0015979 ... N/A N/A
    503267 6l4z:H (1.9) BS01 E5X 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003723 ... Q32ZE1 31953156
    503268 6l50:H (1.95) BS01 E60 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0003723 ... Q32ZE1 31953156
    503269 6l54:C (3.43) BS01 GTP ? GO:0000184 ... Q9H0W8 31729466
    503270 6l54:C (3.43) BS02 MG ? GO:0000184 ... Q9H0W8 31729466
    503271 6l55:A (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503272 6l55:B (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503273 6l55:C (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503274 6l55:D (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503275 6l55:E (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503276 6l55:F (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503277 6l55:G (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503278 6l55:H (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503279 6l55:I (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503280 6l55:J (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503281 6l55:K (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503282 6l55:L (1.78305) BS01 FE 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503283 6l56:A (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503284 6l56:B (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503285 6l56:C (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503286 6l56:D (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503287 6l56:E (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503288 6l56:F (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503289 6l56:G (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503290 6l56:H (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503291 6l56:I (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503292 6l56:J (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503293 6l56:K (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503294 6l56:L (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503295 6l56:M (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503296 6l56:N (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503297 6l56:O (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503298 6l56:P (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503299 6l56:Q (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503300 6l56:R (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503301 6l56:S (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503302 6l56:T (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503303 6l56:U (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503304 6l56:V (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503305 6l56:W (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503306 6l56:X (1.85301) BS01 FE2 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503307 6l57:A (2.302) BS01 MG 1.1.1.41 GO:0000287 ... P50213 32277159
    503308 6l57:B (2.302) BS01 MG ? GO:0000287 ... P51553 32277159
    503309 6l57:B (2.302) BS02 ATP ? GO:0000287 ... P51553 32277159
    503310 6l58:A (3.90271) BS01 CU 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503311 6l58:B (3.90271) BS01 CU 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503312 6l58:C (3.90271) BS01 CU 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503313 6l58:D (3.90271) BS01 CU 1.16.3.1 GO:0004322 ... D3JCC5 35359603
    503314 6l59:A (2.254) BS01 ATP 1.1.1.41 GO:0000287 ... P50213 32277159
    503315 6l59:A (2.254) BS02 MG 1.1.1.41 GO:0000287 ... P50213 32277159
    503316 6l59:B (2.254) BS01 ATP ? GO:0000287 ... P51553 32277159
    503317 6l59:B (2.254) BS02 MG ? GO:0000287 ... P51553 32277159
    503318 6l5a:A (1.80007) BS01 SF4 ? GO:0004844 ... A0QP43 33248387
    503319 6l5b:A (2.00005) BS01 SF4 ? GO:0004844 ... A0QP43 33248387
    503320 6l5g:A (2.5) BS01 CA 1.11.1.7 GO:0004601 ... P80025 33427997
    503321 6l5g:A (2.5) BS02 HEM 1.11.1.7 GO:0004601 ... P80025 33427997
    503322 6l5g:A (2.5) BS03 K 1.11.1.7 GO:0004601 ... P80025 33427997
    503323 6l5g:A (2.5) BS04 K 1.11.1.7 GO:0004601 ... P80025 33427997
    503324 6l5g:A (2.5) BS05 ZN 1.11.1.7 GO:0004601 ... P80025 33427997
    503325 6l5m:A (2.7) BS01 AMP 3.6.4.13 GO:0003676 ... Q9NR30 32714761
    503326 6l5m:B (2.7) BS01 AMP 3.6.4.13 GO:0003676 ... Q9NR30 32714761
    503327 6l5m:C (2.7) BS01 AMP 3.6.4.13 GO:0003676 ... Q9NR30 32714761
    503328 6l5m:D (2.7) BS01 AMP 3.6.4.13 GO:0003676 ... Q9NR30 32714761
    503329 6l5m:E (2.7) BS01 AMP 3.6.4.13 GO:0003676 ... Q9NR30 32714761
    503330 6l5n:A (2.242) BS01 rna 3.6.4.13 GO:0003676 ... Q9NR30 32714761
    503331 6l5n:A (2.242) BS02 rna 3.6.4.13 GO:0003676 ... Q9NR30 32714761
    503332 6l5n:A (2.242) BS03 ANP 3.6.4.13 GO:0003676 ... Q9NR30 32714761
    503333 6l5n:A (2.242) BS04 ANP 3.6.4.13 GO:0003676 ... Q9NR30 32714761
    503334 6l5n:B (2.242) BS01 rna 3.6.4.13 GO:0003676 ... Q9NR30 32714761
    503335 6l5n:B (2.242) BS02 ANP 3.6.4.13 GO:0003676 ... Q9NR30 32714761
    503336 6l5n:B (2.242) BS03 ANP 3.6.4.13 GO:0003676 ... Q9NR30 32714761
    503337 6l5o:A (1.8) BS01 ADP 3.6.4.13 GO:0003676 ... Q9NR30 32714761
    503338 6l5p:A (2.603) BS01 UPG N/A GO:0008194 ... N/A 31986016
    503339 6l5q:A (2.894) BS01 GDU N/A GO:0008194 ... N/A 31986016
    503340 6l5r:A (2.89) BS01 UDP N/A GO:0008194 ... N/A 31986016
    503341 6l5r:A (2.89) BS02 G50 N/A GO:0008194 ... N/A 31986016
    503342 6l5s:A (1.914) BS01 UDP N/A GO:0008194 ... N/A 31986016
    503343 6l5s:A (1.914) BS02 G50 N/A GO:0008194 ... N/A 31986016
    503344 6l5t:A (1.72) BS01 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13
    GO:0006508 ... A0A385H8D7 32216114
    503345 6l5v:A (1.45) BS01 HEM ? GO:0004601 ... P69905 32071219
    503346 6l5v:B (1.45) BS01 HEM ? GO:0004601 ... P68871 32071219
    503347 6l5w:A (1.5) BS01 HEM ? GO:0004601 ... P69905 32071219
    503348 6l5w:B (1.5) BS01 HEM ? GO:0004601 ... P68871 32071219
    503349 6l5x:A (1.65) BS01 HEM ? GO:0004601 ... P69905 32071219
    503350 6l5x:B (1.65) BS01 HEM ? GO:0004601 ... P68871 32071219
    503351 6l5x:C (1.65) BS01 HEM ? GO:0004601 ... P69905 32071219
    503352 6l5x:D (1.65) BS01 HEM ? GO:0004601 ... P68871 32071219
    503353 6l5y:A (1.65) BS01 HEM ? GO:0004601 ... P69905 32071219
    503354 6l5y:B (1.65) BS01 HEM ? GO:0004601 ... P68871 32071219
    503355 6l5y:C (1.65) BS01 HEM ? GO:0004601 ... P69905 32071219
    503356 6l5y:D (1.65) BS01 HEM ? GO:0004601 ... P68871 32071219
    503357 6l5z:A (3.05) BS01 peptide ? N/A P42568 33306911
    503358 6l63:A (3.0) BS01 peptide 3.4.21.38 GO:0004252 ... P00748 32839601
    503359 6l63:C (3.0) BS01 peptide 3.4.21.38 GO:0004252 ... P00748 32839601
    503360 6l64:A (2.08) BS01 BGC ? GO:0002667 ... Q05315 32081418
    503361 6l64:A (2.08) BS02 BGC ? GO:0002667 ... Q05315 32081418
    503362 6l64:A (2.08) BS03 BGC ? GO:0002667 ... Q05315 32081418
    503363 6l65:A (1.8) BS01 peptide 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 N/A
    503364 6l65:A (1.8) BS02 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 N/A
    503365 6l66:A (2.169) BS01 peptide 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 N/A
    503366 6l66:A (2.169) BS02 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 N/A
    503367 6l66:A (2.169) BS03 NAD 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 N/A
    503368 6l66:A (2.169) BS04 3LX 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 N/A
    503369 6l67:A (1.97) BS01 GAL ? GO:0002667 ... Q05315 32081418
    503370 6l67:A (1.97) BS02 GAL ? GO:0002667 ... Q05315 32081418
    503371 6l68:A (1.92) BS01 ALL ? GO:0002667 ... Q05315 32081418
    503372 6l68:A (1.92) BS02 ALL ? GO:0002667 ... Q05315 32081418
    503373 6l69:A (1.5) BS01 HEM ? GO:0004497 ... Q82GL5 31767148
    503374 6l69:B (1.5) BS01 HEM ? GO:0004497 ... Q82GL5 31767148
    503375 6l6a:A (1.81) BS01 BMA ? GO:0002667 ... Q05315 32081418
    503376 6l6b:A (1.802) BS01 FUL ? GO:0002667 ... Q05315 32081418
    503377 6l6c:A (1.77) BS01 64K ? GO:0002667 ... Q05315 32081418
    503378 6l6c:A (1.77) BS02 64K ? GO:0002667 ... Q05315 32081418
    503379 6l6e:A (1.92) BS01 E6L 3.1.4.35 GO:0004114 ... O76074 32663396 BindingDB: Ki=5.0nM
    503380 6l6e:A (1.92) BS02 ZN 3.1.4.35 GO:0004114 ... O76074 32663396
    503381 6l6j:A (2.6) BS01 FMN ? GO:0000166 ... A0A0L8AFM7 N/A
    503382 6l6j:A (2.6) BS02 SF4 ? GO:0000166 ... A0A0L8AFM7 N/A
    503383 6l6j:A (2.6) BS03 ADP ? GO:0000166 ... A0A0L8AFM7 N/A
    503384 6l6k:A (1.8) BS01 peptide ? GO:0003677 ... P19793 N/A
    503385 6l6k:A (1.8) BS02 9HF ? GO:0003677 ... P19793 N/A BindingDB: EC50=143nM
    503386 6l6l:A (2.781) BS01 dna ? GO:0003700 ... P43354 31723028
    503387 6l6l:A (2.781) BS02 dna ? GO:0003700 ... P43354 31723028
    503388 6l6l:A (2.781) BS03 ZN ? GO:0003700 ... P43354 31723028
    503389 6l6l:A (2.781) BS04 ZN ? GO:0003700 ... P43354 31723028
    503390 6l6l:B (2.781) BS01 dna ? GO:0003700 ... P43354 31723028
    503391 6l6l:B (2.781) BS02 dna ? GO:0003700 ... P43354 31723028
    503392 6l6l:B (2.781) BS03 ZN ? GO:0003700 ... P43354 31723028
    503393 6l6l:B (2.781) BS04 ZN ? GO:0003700 ... P43354 31723028
    503394 6l6o:A (1.8) BS01 GDP ? GO:0003924 ... A0A109NYM0 33135673
    503395 6l6q:A (2.601) BS01 dna ? GO:0003700 ... P43354 31723028
    503396 6l6q:A (2.601) BS02 dna ? GO:0003700 ... P43354 31723028
    503397 6l6q:A (2.601) BS03 ZN ? GO:0003700 ... P43354 31723028
    503398 6l6q:A (2.601) BS04 ZN ? GO:0003700 ... P43354 31723028
    503399 6l6q:B (2.601) BS01 dna ? GO:0003700 ... P43354 31723028
    503400 6l6q:B (2.601) BS02 dna ? GO:0003700 ... P43354 31723028

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).