SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    503801 6la2:a (3.89) BS02 dna ? GO:0000786 ... P04908 33590100
    503802 6la2:b (3.89) BS01 dna ? GO:0000786 ... P06899 33590100
    503803 6la2:b (3.89) BS02 dna ? GO:0000786 ... P06899 33590100
    503804 6la2:e (3.89) BS01 dna ? GO:0000786 ... P68431 33590100
    503805 6la2:e (3.89) BS02 dna ? GO:0000786 ... P68431 33590100
    503806 6la2:f (3.89) BS01 dna ? GO:0000781 ... P62805 33590100
    503807 6la2:f (3.89) BS02 dna ? GO:0000781 ... P62805 33590100
    503808 6la2:g (3.89) BS01 dna ? GO:0000786 ... P04908 33590100
    503809 6la2:g (3.89) BS02 dna ? GO:0000786 ... P04908 33590100
    503810 6la2:h (3.89) BS01 dna ? GO:0000786 ... P06899 33590100
    503811 6la2:h (3.89) BS02 dna ? GO:0000786 ... P06899 33590100
    503812 6la2:h (3.89) BS03 dna ? GO:0000786 ... P06899 33590100
    503813 6la2:i (3.89) BS01 dna ? GO:0000786 ... P68431 33590100
    503814 6la2:i (3.89) BS02 dna ? GO:0000786 ... P68431 33590100
    503815 6la2:j (3.89) BS01 dna ? GO:0000781 ... P62805 33590100
    503816 6la2:j (3.89) BS02 dna ? GO:0000781 ... P62805 33590100
    503817 6la2:k (3.89) BS01 dna ? GO:0000786 ... P04908 33590100
    503818 6la2:k (3.89) BS02 dna ? GO:0000786 ... P04908 33590100
    503819 6la2:l (3.89) BS01 dna ? GO:0000786 ... P06899 33590100
    503820 6la2:l (3.89) BS02 dna ? GO:0000786 ... P06899 33590100
    503821 6la8:A (3.4) BS01 dna ? GO:0000786 ... P68431 32958761
    503822 6la8:A (3.4) BS02 dna ? GO:0000786 ... P68431 32958761
    503823 6la8:B (3.4) BS01 dna ? GO:0000781 ... P62805 32958761
    503824 6la8:C (3.4) BS01 dna ? GO:0000786 ... P04908 32958761
    503825 6la8:C (3.4) BS02 dna ? GO:0000786 ... P04908 32958761
    503826 6la8:D (3.4) BS01 dna ? GO:0000786 ... P06899 32958761
    503827 6la8:D (3.4) BS02 dna ? GO:0000786 ... P06899 32958761
    503828 6la8:E (3.4) BS01 dna ? GO:0000786 ... P68431 32958761
    503829 6la8:E (3.4) BS02 dna ? GO:0000786 ... P68431 32958761
    503830 6la8:F (3.4) BS01 dna ? GO:0000781 ... P62805 32958761
    503831 6la8:F (3.4) BS02 dna ? GO:0000781 ... P62805 32958761
    503832 6la8:G (3.4) BS01 dna ? GO:0000786 ... P04908 32958761
    503833 6la8:G (3.4) BS02 dna ? GO:0000786 ... P04908 32958761
    503834 6la8:H (3.4) BS01 dna ? GO:0000786 ... P06899 32958761
    503835 6la8:H (3.4) BS02 dna ? GO:0000786 ... P06899 32958761
    503836 6la8:K (3.4) BS01 dna ? GO:0000786 ... P68431 32958761
    503837 6la8:K (3.4) BS02 dna ? GO:0000786 ... P68431 32958761
    503838 6la8:L (3.4) BS01 dna ? GO:0000781 ... P62805 32958761
    503839 6la8:L (3.4) BS02 dna ? GO:0000781 ... P62805 32958761
    503840 6la8:M (3.4) BS01 dna ? GO:0000786 ... P04908 32958761
    503841 6la8:M (3.4) BS02 dna ? GO:0000786 ... P04908 32958761
    503842 6la8:N (3.4) BS01 dna ? GO:0000786 ... P06899 32958761
    503843 6la8:N (3.4) BS02 dna ? GO:0000786 ... P06899 32958761
    503844 6la8:O (3.4) BS01 dna ? GO:0000786 ... P68431 32958761
    503845 6la8:O (3.4) BS02 dna ? GO:0000786 ... P68431 32958761
    503846 6la8:P (3.4) BS01 dna ? GO:0000781 ... P62805 32958761
    503847 6la8:P (3.4) BS02 dna ? GO:0000781 ... P62805 32958761
    503848 6la8:Q (3.4) BS01 dna ? GO:0000786 ... P04908 32958761
    503849 6la8:Q (3.4) BS02 dna ? GO:0000786 ... P04908 32958761
    503850 6la8:R (3.4) BS01 dna ? GO:0000786 ... P06899 32958761
    503851 6la8:R (3.4) BS02 dna ? GO:0000786 ... P06899 32958761
    503852 6la8:S (3.4) BS01 dna ? GO:0000785 ... P07305 32958761
    503853 6la9:A (3.7) BS01 dna ? GO:0000786 ... P68431 32958761
    503854 6la9:A (3.7) BS02 dna ? GO:0000786 ... P68431 32958761
    503855 6la9:B (3.7) BS01 dna ? GO:0000781 ... P62805 32958761
    503856 6la9:B (3.7) BS02 dna ? GO:0000781 ... P62805 32958761
    503857 6la9:C (3.7) BS01 dna ? GO:0000786 ... P04908 32958761
    503858 6la9:C (3.7) BS02 dna ? GO:0000786 ... P04908 32958761
    503859 6la9:D (3.7) BS01 dna ? GO:0000786 ... P06899 32958761
    503860 6la9:D (3.7) BS02 dna ? GO:0000786 ... P06899 32958761
    503861 6la9:E (3.7) BS01 dna ? GO:0000786 ... P68431 32958761
    503862 6la9:E (3.7) BS02 dna ? GO:0000786 ... P68431 32958761
    503863 6la9:F (3.7) BS01 dna ? GO:0000781 ... P62805 32958761
    503864 6la9:F (3.7) BS02 dna ? GO:0000781 ... P62805 32958761
    503865 6la9:G (3.7) BS01 dna ? GO:0000786 ... P04908 32958761
    503866 6la9:G (3.7) BS02 dna ? GO:0000786 ... P04908 32958761
    503867 6la9:H (3.7) BS01 dna ? GO:0000786 ... P06899 32958761
    503868 6la9:H (3.7) BS02 dna ? GO:0000786 ... P06899 32958761
    503869 6la9:H (3.7) BS03 CA ? GO:0000786 ... P06899 32958761
    503870 6la9:K (3.7) BS01 dna ? GO:0000786 ... P68431 32958761
    503871 6la9:K (3.7) BS02 dna ? GO:0000786 ... P68431 32958761
    503872 6la9:L (3.7) BS01 dna ? GO:0000781 ... P62805 32958761
    503873 6la9:L (3.7) BS02 dna ? GO:0000781 ... P62805 32958761
    503874 6la9:M (3.7) BS01 dna ? GO:0000786 ... P04908 32958761
    503875 6la9:M (3.7) BS02 dna ? GO:0000786 ... P04908 32958761
    503876 6la9:N (3.7) BS01 dna ? GO:0000786 ... P06899 32958761
    503877 6la9:N (3.7) BS02 dna ? GO:0000786 ... P06899 32958761
    503878 6la9:O (3.7) BS01 dna ? GO:0000786 ... P68431 32958761
    503879 6la9:O (3.7) BS02 dna ? GO:0000786 ... P68431 32958761
    503880 6la9:P (3.7) BS01 dna ? GO:0000781 ... P62805 32958761
    503881 6la9:P (3.7) BS02 dna ? GO:0000781 ... P62805 32958761
    503882 6la9:Q (3.7) BS01 dna ? GO:0000786 ... P04908 32958761
    503883 6la9:Q (3.7) BS02 dna ? GO:0000786 ... P04908 32958761
    503884 6la9:R (3.7) BS01 dna ? GO:0000786 ... P06899 32958761
    503885 6la9:R (3.7) BS02 dna ? GO:0000786 ... P06899 32958761
    503886 6la9:S (3.7) BS01 dna ? GO:0000785 ... P07305 32958761
    503887 6la9:S (3.7) BS02 dna ? GO:0000785 ... P07305 32958761
    503888 6la9:T (3.7) BS01 dna ? GO:0000785 ... P07305 32958761
    503889 6la9:T (3.7) BS02 dna ? GO:0000785 ... P07305 32958761
    503890 6laa:A (2.13) BS01 HEM ? GO:0000166 ... A0A0K6ITW2 32472090
    503891 6laa:A (2.13) BS02 FES ? GO:0000166 ... A0A0K6ITW2 32472090
    503892 6laa:A (2.13) BS03 FMN ? GO:0000166 ... A0A0K6ITW2 32472090
    503893 6laa:A (2.13) BS04 CO3 ? GO:0000166 ... A0A0K6ITW2 32472090
    503894 6lab:A (3.2) BS01 dna ? GO:0000786 ... P68431 33590100
    503895 6lab:A (3.2) BS02 dna ? GO:0000786 ... P68431 33590100
    503896 6lab:B (3.2) BS01 dna ? GO:0000781 ... P62805 33590100
    503897 6lab:B (3.2) BS02 dna ? GO:0000781 ... P62805 33590100
    503898 6lab:C (3.2) BS01 dna ? GO:0000786 ... P04908 33590100
    503899 6lab:C (3.2) BS02 dna ? GO:0000786 ... P04908 33590100
    503900 6lab:D (3.2) BS01 dna ? GO:0000786 ... P06899 33590100
    503901 6lab:D (3.2) BS02 dna ? GO:0000786 ... P06899 33590100
    503902 6lab:E (3.2) BS01 dna ? GO:0000786 ... P68431 33590100
    503903 6lab:E (3.2) BS02 dna ? GO:0000786 ... P68431 33590100
    503904 6lab:F (3.2) BS01 dna ? GO:0000781 ... P62805 33590100
    503905 6lab:F (3.2) BS02 dna ? GO:0000781 ... P62805 33590100
    503906 6lab:G (3.2) BS01 dna ? GO:0000786 ... P04908 33590100
    503907 6lab:G (3.2) BS02 dna ? GO:0000786 ... P04908 33590100
    503908 6lab:H (3.2) BS01 dna ? GO:0000786 ... P06899 33590100
    503909 6lab:H (3.2) BS02 dna ? GO:0000786 ... P06899 33590100
    503910 6lab:K (3.2) BS01 dna ? GO:0000786 ... P68431 33590100
    503911 6lab:K (3.2) BS02 dna ? GO:0000786 ... P68431 33590100
    503912 6lab:L (3.2) BS01 dna ? GO:0000781 ... P62805 33590100
    503913 6lab:L (3.2) BS02 dna ? GO:0000781 ... P62805 33590100
    503914 6lab:M (3.2) BS01 dna ? GO:0000786 ... P04908 33590100
    503915 6lab:M (3.2) BS02 dna ? GO:0000786 ... P04908 33590100
    503916 6lab:N (3.2) BS01 dna ? GO:0000786 ... P06899 33590100
    503917 6lab:N (3.2) BS02 dna ? GO:0000786 ... P06899 33590100
    503918 6lab:O (3.2) BS01 dna ? GO:0000786 ... P68431 33590100
    503919 6lab:O (3.2) BS02 dna ? GO:0000786 ... P68431 33590100
    503920 6lab:P (3.2) BS01 dna ? GO:0000781 ... P62805 33590100
    503921 6lab:P (3.2) BS02 dna ? GO:0000781 ... P62805 33590100
    503922 6lab:Q (3.2) BS01 dna ? GO:0000786 ... P04908 33590100
    503923 6lab:Q (3.2) BS02 dna ? GO:0000786 ... P04908 33590100
    503924 6lab:R (3.2) BS01 dna ? GO:0000786 ... P06899 33590100
    503925 6lab:R (3.2) BS02 dna ? GO:0000786 ... P06899 33590100
    503926 6lab:U (3.2) BS01 dna ? GO:0000785 ... P07305 33590100
    503927 6lab:U (3.2) BS02 dna ? GO:0000785 ... P07305 33590100
    503928 6lab:U (3.2) BS03 dna ? GO:0000785 ... P07305 33590100
    503929 6lab:V (3.2) BS01 dna ? GO:0000785 ... P07305 33590100
    503930 6lac:A (1.3) BS01 ZN 4.2.1.1 GO:0004089 ... A4DA31 N/A
    503931 6lac:B (1.3) BS01 ZN 4.2.1.1 GO:0004089 ... A4DA31 N/A
    503932 6lae:A (2.81) BS01 dna ? GO:0003684 ... P23025 31962067
    503933 6lae:A (2.81) BS02 dna ? GO:0003684 ... P23025 31962067
    503934 6lae:A (2.81) BS03 ZN ? GO:0003684 ... P23025 31962067
    503935 6lae:B (2.81) BS01 dna ? GO:0003684 ... P23025 31962067
    503936 6lae:B (2.81) BS02 dna ? GO:0003684 ... P23025 31962067
    503937 6lae:B (2.81) BS03 ZN ? GO:0003684 ... P23025 31962067
    503938 6lah:A (1.87) BS01 ZN ? N/A A0A1E1GJG5 32269076
    503939 6lah:A (1.87) BS02 EKG ? N/A A0A1E1GJG5 32269076
    503940 6lah:C (1.87) BS01 ZN ? N/A A0A1E1GJG5 32269076
    503941 6lah:C (1.87) BS02 ZN ? N/A A0A1E1GJG5 32269076
    503942 6lah:C (1.87) BS03 EKG ? N/A A0A1E1GJG5 32269076
    503943 6lai:A (1.6) BS01 ZN 4.2.1.1 GO:0004089 ... A4DA31 N/A
    503944 6lai:B (1.6) BS01 ZN 4.2.1.1 GO:0004089 ... A4DA31 N/A
    503945 6lam:A (1.8) BS01 ZN ? N/A A0A1E1GJG5 32269076
    503946 6lam:A (1.8) BS02 ZN ? N/A A0A1E1GJG5 32269076
    503947 6lam:A (1.8) BS03 EKG ? N/A A0A1E1GJG5 32269076
    503948 6lam:C (1.8) BS01 ZN ? N/A A0A1E1GJG5 32269076
    503949 6lam:C (1.8) BS02 EKG ? N/A A0A1E1GJG5 32269076
    503950 6las:C (2.708) BS01 rna ? GO:0003676 ... P09012 31844059
    503951 6las:D (2.708) BS01 rna ? GO:0003676 ... P09012 31844059
    503952 6las:E (2.708) BS01 rna ? GO:0003676 ... P09012 31844059
    503953 6lau:C (3.109) BS01 rna ? GO:0003676 ... P09012 31844059
    503954 6lau:D (3.109) BS01 rna ? GO:0003676 ... P09012 31844059
    503955 6lau:D (3.109) BS02 rna ? GO:0003676 ... P09012 31844059
    503956 6lau:E (3.109) BS01 rna ? GO:0003676 ... P09012 31844059
    503957 6lax:C (2.7) BS01 rna ? GO:0003676 ... P09012 31844059
    503958 6lax:D (2.7) BS01 rna ? GO:0003676 ... P09012 31844059
    503959 6lax:E (2.7) BS01 rna ? GO:0003676 ... P09012 31844059
    503960 6laz:C (2.76) BS01 rna ? GO:0003676 ... P09012 31844059
    503961 6laz:D (2.76) BS01 rna ? GO:0003676 ... P09012 31844059
    503962 6laz:E (2.76) BS01 rna ? GO:0003676 ... P09012 31844059
    503963 6lb2:A (1.69381) BS01 ZN ? N/A A0A1E1GJG5 32269076
    503964 6lb2:A (1.69381) BS02 EKG ? N/A A0A1E1GJG5 32269076
    503965 6lb2:C (1.69381) BS01 ZN ? N/A A0A1E1GJG5 32269076
    503966 6lb2:C (1.69381) BS02 ZN ? N/A A0A1E1GJG5 32269076
    503967 6lb2:C (1.69381) BS03 ZN ? N/A A0A1E1GJG5 32269076
    503968 6lb2:C (1.69381) BS04 EKG ? N/A A0A1E1GJG5 32269076
    503969 6lb3:A (2.497) BS01 dna ? GO:0003677 ... Q9HVC1 N/A
    503970 6lb3:B (2.497) BS01 dna ? GO:0003677 ... Q9HVC1 N/A
    503971 6lb3:B (2.497) BS02 dna ? GO:0003677 ... Q9HVC1 N/A
    503972 6lb3:C (2.497) BS01 dna ? GO:0003677 ... Q9HVC1 N/A
    503973 6lb3:C (2.497) BS02 dna ? GO:0003677 ... Q9HVC1 N/A
    503974 6lb3:D (2.497) BS01 dna ? GO:0003677 ... Q9HVC1 N/A
    503975 6lb3:D (2.497) BS02 dna ? GO:0003677 ... Q9HVC1 N/A
    503976 6lb3:E (2.497) BS01 dna ? GO:0003677 ... Q9HVC1 N/A
    503977 6lb3:E (2.497) BS02 dna ? GO:0003677 ... Q9HVC1 N/A
    503978 6lb3:F (2.497) BS01 dna ? GO:0003677 ... Q9HVC1 N/A
    503979 6lb3:G (2.497) BS01 dna ? GO:0003677 ... Q9HVC1 N/A
    503980 6lb3:G (2.497) BS02 dna ? GO:0003677 ... Q9HVC1 N/A
    503981 6lb3:H (2.497) BS01 dna ? GO:0003677 ... Q9HVC1 N/A
    503982 6lb4:A (1.5) BS01 peptide ? GO:0003677 ... P19793 N/A
    503983 6lb4:A (1.5) BS02 E8L ? GO:0003677 ... P19793 N/A
    503984 6lb5:A (2.4) BS01 peptide ? GO:0003677 ... P19793 N/A
    503985 6lb5:A (2.4) BS02 E80 ? GO:0003677 ... P19793 N/A BindingDB: Ki=182nM, EC50=19nM
    503986 6lb5:C (2.4) BS01 peptide ? GO:0003677 ... P19793 N/A
    503987 6lb5:C (2.4) BS02 E80 ? GO:0003677 ... P19793 N/A BindingDB: Ki=182nM, EC50=19nM
    503988 6lb6:A (2.4) BS01 peptide ? GO:0003677 ... P19793 N/A
    503989 6lb6:A (2.4) BS02 E8O ? GO:0003677 ... P19793 N/A BindingDB: EC50=169nM
    503990 6lb7:A (2.101) BS01 CA ? GO:0005509 ... Q9BPX6 32790952
    503991 6lb7:B (2.101) BS01 CA ? GO:0005509 ... Q8IYU8 32790952
    503992 6lbb:A (1.8) BS01 SGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    503993 6lbb:A (1.8) BS02 BGC 3.2.1.21 GO:0004553 ... Q9XEI3 36151080
    503994 6lbc:A (1.801) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33548881
    503995 6lbc:B (1.801) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33548881
    503996 6lbc:C (1.801) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33548881
    503997 6lbc:D (1.801) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33548881
    503998 6lbc:E (1.801) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33548881
    503999 6lbc:F (1.801) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33548881
    504000 6lbd:A (1.386) BS01 FE 1.16.3.1 GO:0004322 ... T2B7E1 33548881

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).