SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    504801 6lkq:S (3.1) BS01 rna N/A GO:0003723 ... N/A 32341159
    504802 6lkq:T (3.1) BS01 rna ? GO:0003735 ... A0A5C9AJ78 32341159
    504803 6lkq:U (3.1) BS01 rna N/A GO:0003723 ... N/A 32341159
    504804 6lkq:V (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    504805 6lkq:W (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    504806 6lkq:X (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    504807 6lkq:X (3.1) BS02 rna N/A GO:0003735 ... N/A 32341159
    504808 6lkq:Y (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    504809 6lkq:Z (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    504810 6lkq:a (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    504811 6lkq:b (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    504812 6lkq:c (3.1) BS01 rna N/A GO:0003723 ... N/A 32341159
    504813 6lkq:d (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    504814 6lkq:d (3.1) BS02 rna N/A GO:0003735 ... N/A 32341159
    504815 6lkq:e (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    504816 6lkq:f (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    504817 6lkq:g (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    504818 6lkq:h (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    504819 6lkq:h (3.1) BS02 rna N/A GO:0003735 ... N/A 32341159
    504820 6lkq:i (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    504821 6lkq:j (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    504822 6lkq:k (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    504823 6lkq:l (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    504824 6lkq:m (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    504825 6lkq:n (3.1) BS01 rna N/A GO:0003735 ... N/A 32341159
    504826 6lkq:v (3.1) BS01 rna ? GO:0003924 ... C3SE77 32341159
    504827 6lkq:v (3.1) BS02 rna ? GO:0003924 ... C3SE77 32341159
    504828 6lkr:A (1.84) BS01 CA ? N/A Q9D8Q7 32139512
    504829 6lkr:B (1.84) BS01 CA ? N/A Q9D8Q7 32139512
    504830 6lks:A (3.24) BS01 MAN ? GO:0019031 ... A7LI25 32963316
    504831 6lks:A (3.24) BS02 ZN ? GO:0019031 ... A7LI25 32963316
    504832 6lks:G (3.24) BS01 ZN ? GO:0019031 ... A7LI25 32963316
    504833 6lks:I (3.24) BS01 ZN ? GO:0019031 ... A7LI25 32963316
    504834 6lks:K (3.24) BS01 ZN ? GO:0019031 ... A7LI25 32963316
    504835 6lkx:A (2.998) BS01 ZN 3.6.4.13 GO:0005524 ... D2CSC7 32461315
    504836 6lkx:A (2.998) BS02 ZN 3.6.4.13 GO:0005524 ... D2CSC7 32461315
    504837 6lkx:A (2.998) BS03 ZN 3.6.4.13 GO:0005524 ... D2CSC7 32461315
    504838 6lkx:B (2.998) BS01 ZN 3.6.4.13 GO:0005524 ... D2CSC7 32461315
    504839 6lkx:B (2.998) BS02 ZN 3.6.4.13 GO:0005524 ... D2CSC7 32461315
    504840 6lkx:B (2.998) BS03 ZN 3.6.4.13 GO:0005524 ... D2CSC7 32461315
    504841 6lky:A (2.2) BS01 NAD ? GO:0000166 ... Q602J2 N/A
    504842 6lky:B (2.2) BS01 NAD ? GO:0000166 ... Q602J2 N/A
    504843 6ll0:A (2.2) BS01 FES ? GO:0016491 ... Q84II6 N/A
    504844 6ll0:A (2.2) BS02 FE2 ? GO:0016491 ... Q84II6 N/A
    504845 6ll0:A (2.2) BS03 9CA ? GO:0016491 ... Q84II6 N/A
    504846 6ll0:B (2.2) BS01 FES ? GO:0016491 ... Q84II6 N/A
    504847 6ll0:B (2.2) BS02 FE2 ? GO:0016491 ... Q84II6 N/A
    504848 6ll0:B (2.2) BS03 MG ? GO:0016491 ... Q84II6 N/A
    504849 6ll0:C (2.2) BS01 FES ? GO:0016491 ... Q84II6 N/A
    504850 6ll0:C (2.2) BS02 FE2 ? GO:0016491 ... Q84II6 N/A
    504851 6ll0:C (2.2) BS03 9CA ? GO:0016491 ... Q84II6 N/A
    504852 6ll1:A (2.15) BS01 FES ? GO:0016491 ... Q84II6 N/A
    504853 6ll1:A (2.15) BS02 FE2 ? GO:0016491 ... Q84II6 N/A
    504854 6ll1:B (2.15) BS01 FES ? GO:0016491 ... Q84II6 N/A
    504855 6ll1:B (2.15) BS02 MG ? GO:0016491 ... Q84II6 N/A
    504856 6ll1:B (2.15) BS03 FE2 ? GO:0016491 ... Q84II6 N/A
    504857 6ll1:B (2.15) BS04 OXY ? GO:0016491 ... Q84II6 N/A
    504858 6ll1:C (2.15) BS01 FES ? GO:0016491 ... Q84II6 N/A
    504859 6ll1:C (2.15) BS02 FE2 ? GO:0016491 ... Q84II6 N/A
    504860 6ll1:C (2.15) BS03 OXY ? GO:0016491 ... Q84II6 N/A
    504861 6ll2:A (1.75) BS01 MG 5.3.1.5 GO:0000287 ... P24300 N/A
    504862 6ll2:A (1.75) BS02 MG 5.3.1.5 GO:0000287 ... P24300 N/A
    504863 6ll4:A (2.2) BS01 FES ? GO:0016491 ... Q84II6 N/A
    504864 6ll4:A (2.2) BS02 FE ? GO:0016491 ... Q84II6 N/A
    504865 6ll4:A (2.2) BS03 EHX ? GO:0016491 ... Q84II6 N/A
    504866 6ll4:B (2.2) BS01 FES ? GO:0016491 ... Q84II6 N/A
    504867 6ll4:B (2.2) BS02 FE ? GO:0016491 ... Q84II6 N/A
    504868 6ll4:B (2.2) BS03 9G0 ? GO:0016491 ... Q84II6 N/A
    504869 6ll4:B (2.2) BS04 MG ? GO:0016491 ... Q84II6 N/A
    504870 6ll4:C (2.2) BS01 FES ? GO:0016491 ... Q84II6 N/A
    504871 6ll4:C (2.2) BS02 FE ? GO:0016491 ... Q84II6 N/A
    504872 6ll4:C (2.2) BS03 9G0 ? GO:0016491 ... Q84II6 N/A
    504873 6ll5:A (1.75) BS01 GDP ? GO:0003924 ... A0A0H3GRR0 32039890
    504874 6ll6:A (2.5) BS01 GDP ? GO:0003924 ... P0A9A6 32039890
    504875 6ll7:A (2.2) BS01 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    504876 6ll7:A (2.2) BS02 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    504877 6ll7:A (2.2) BS03 CA 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    504878 6ll7:B (2.2) BS01 CA 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    504879 6ll7:B (2.2) BS02 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    504880 6ll7:B (2.2) BS03 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    504881 6ll7:C (2.2) BS01 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    504882 6ll7:C (2.2) BS02 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    504883 6ll7:C (2.2) BS03 CA 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    504884 6ll7:D (2.2) BS01 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    504885 6ll7:D (2.2) BS02 MN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    504886 6ll8:A (1.3) BS01 MG 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    504887 6ll8:A (1.3) BS02 MG 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    504888 6ll8:A (1.3) BS03 MG 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    504889 6ll8:A (1.3) BS04 MG 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    504890 6ll8:A (1.3) BS05 CA 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    504891 6ll8:A (1.3) BS06 2PN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    504892 6ll8:B (1.3) BS01 CA 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    504893 6ll8:B (1.3) BS02 MG 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    504894 6ll8:B (1.3) BS03 MG 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    504895 6ll8:B (1.3) BS04 MG 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    504896 6ll8:B (1.3) BS05 MG 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    504897 6ll8:B (1.3) BS06 2PN 3.6.1.1 GO:0004427 ... L8AXY8 32152422
    504898 6ll9:B (2.7) BS01 DAL 6.3.2.4 GO:0003824 ... A0KKW8 32609505
    504899 6lla:A (1.88) BS01 NAD N/A GO:0003856 ... N/A 32661075
    504900 6lla:A (1.88) BS02 MG N/A GO:0003856 ... N/A 32661075
    504901 6lla:B (1.88) BS01 NAD N/A GO:0003856 ... N/A 32661075
    504902 6lla:B (1.88) BS02 MG N/A GO:0003856 ... N/A 32661075
    504903 6lla:C (1.88) BS01 NAD N/A GO:0003856 ... N/A 32661075
    504904 6lla:C (1.88) BS02 MG N/A GO:0003856 ... N/A 32661075
    504905 6lla:D (1.88) BS01 NAD N/A GO:0003856 ... N/A 32661075
    504906 6lla:D (1.88) BS02 MG N/A GO:0003856 ... N/A 32661075
    504907 6llb:A (2.6) BS01 rna N/A GO:0003723 ... N/A 32552320
    504908 6llb:A (2.6) BS02 ZN N/A GO:0003723 ... N/A 32552320
    504909 6llb:A (2.6) BS03 ZN N/A GO:0003723 ... N/A 32552320
    504910 6llb:B (2.6) BS01 rna N/A GO:0003723 ... N/A 32552320
    504911 6llb:B (2.6) BS02 ZN N/A GO:0003723 ... N/A 32552320
    504912 6llb:B (2.6) BS03 ZN N/A GO:0003723 ... N/A 32552320
    504913 6llc:A (2.501) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 33087132
    504914 6llc:A (2.501) BS02 EHL 1.6.5.2 GO:0000209 ... P15559 33087132
    504915 6llc:A (2.501) BS03 EHL 1.6.5.2 GO:0000209 ... P15559 33087132
    504916 6llc:A (2.501) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 33087132
    504917 6llc:B (2.501) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 33087132
    504918 6llc:B (2.501) BS02 EHL 1.6.5.2 GO:0000209 ... P15559 33087132
    504919 6llc:B (2.501) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 33087132
    504920 6llc:C (2.501) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 33087132
    504921 6llc:D (2.501) BS01 EHL 1.6.5.2 GO:0000209 ... P15559 33087132
    504922 6llc:D (2.501) BS02 EHL 1.6.5.2 GO:0000209 ... P15559 33087132
    504923 6llc:D (2.501) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 33087132
    504924 6llc:E (2.501) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 33087132
    504925 6llc:E (2.501) BS02 EHL 1.6.5.2 GO:0000209 ... P15559 33087132
    504926 6llc:F (2.501) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 33087132
    504927 6llc:F (2.501) BS02 EHL 1.6.5.2 GO:0000209 ... P15559 33087132
    504928 6llc:F (2.501) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 33087132
    504929 6llc:G (2.501) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 33087132
    504930 6llc:G (2.501) BS02 EHL 1.6.5.2 GO:0000209 ... P15559 33087132
    504931 6llc:G (2.501) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 33087132
    504932 6llc:H (2.501) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 33087132
    504933 6llc:H (2.501) BS02 EHL 1.6.5.2 GO:0000209 ... P15559 33087132
    504934 6llc:H (2.501) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 33087132
    504935 6llc:I (2.501) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 33087132
    504936 6llc:I (2.501) BS02 EHL 1.6.5.2 GO:0000209 ... P15559 33087132
    504937 6llc:I (2.501) BS03 EHL 1.6.5.2 GO:0000209 ... P15559 33087132
    504938 6llc:I (2.501) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 33087132
    504939 6llc:J (2.501) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 33087132
    504940 6llc:J (2.501) BS02 EHL 1.6.5.2 GO:0000209 ... P15559 33087132
    504941 6llc:J (2.501) BS03 EHL 1.6.5.2 GO:0000209 ... P15559 33087132
    504942 6llc:J (2.501) BS04 FAD 1.6.5.2 GO:0000209 ... P15559 33087132
    504943 6llc:K (2.501) BS01 FAD 1.6.5.2 GO:0000209 ... P15559 33087132
    504944 6llc:K (2.501) BS02 EHL 1.6.5.2 GO:0000209 ... P15559 33087132
    504945 6llc:K (2.501) BS03 FAD 1.6.5.2 GO:0000209 ... P15559 33087132
    504946 6llc:L (2.501) BS01 EHL 1.6.5.2 GO:0000209 ... P15559 33087132
    504947 6llc:L (2.501) BS02 FAD 1.6.5.2 GO:0000209 ... P15559 33087132
    504948 6lle:A (2.9) BS01 ACP 7.2.2.10 GO:0000045 ... P16615 32851169
    504949 6lle:A (2.9) BS02 MG 7.2.2.10 GO:0000045 ... P16615 32851169
    504950 6lle:A (2.9) BS03 CA 7.2.2.10 GO:0000045 ... P16615 32851169
    504951 6lle:A (2.9) BS04 CA 7.2.2.10 GO:0000045 ... P16615 32851169
    504952 6llf:A (1.93) BS01 FES ? GO:0016491 ... Q84II6 N/A
    504953 6llf:A (1.93) BS02 FE2 ? GO:0016491 ... Q84II6 N/A
    504954 6llf:A (1.93) BS03 WBP ? GO:0016491 ... Q84II6 N/A
    504955 6llf:B (1.93) BS01 FES ? GO:0016491 ... Q84II6 N/A
    504956 6llf:B (1.93) BS02 FE2 ? GO:0016491 ... Q84II6 N/A
    504957 6llf:B (1.93) BS03 WBP ? GO:0016491 ... Q84II6 N/A
    504958 6llf:C (1.93) BS01 FES ? GO:0016491 ... Q84II6 N/A
    504959 6llf:C (1.93) BS02 FE2 ? GO:0016491 ... Q84II6 N/A
    504960 6llf:C (1.93) BS03 WBP ? GO:0016491 ... Q84II6 N/A
    504961 6llf:D (1.93) BS01 FES ? GO:0008901 ... Q8GI16 N/A
    504962 6llf:E (1.93) BS01 FES ? GO:0008901 ... Q8GI16 N/A
    504963 6llf:F (1.93) BS01 FES ? GO:0008901 ... Q8GI16 N/A
    504964 6llh:A (1.99) BS01 FE2 ? GO:0016491 ... Q84II6 N/A
    504965 6llh:A (1.99) BS02 FES ? GO:0016491 ... Q84II6 N/A
    504966 6llh:A (1.99) BS03 BPY ? GO:0016491 ... Q84II6 N/A
    504967 6llh:B (1.99) BS01 FE2 ? GO:0016491 ... Q84II6 N/A
    504968 6llh:B (1.99) BS02 FES ? GO:0016491 ... Q84II6 N/A
    504969 6llh:B (1.99) BS03 BPY ? GO:0016491 ... Q84II6 N/A
    504970 6llh:C (1.99) BS01 FE2 ? GO:0016491 ... Q84II6 N/A
    504971 6llh:C (1.99) BS02 FES ? GO:0016491 ... Q84II6 N/A
    504972 6llh:C (1.99) BS03 BPY ? GO:0016491 ... Q84II6 N/A
    504973 6llh:D (1.99) BS01 FES ? GO:0008901 ... Q8GI16 N/A
    504974 6llh:E (1.99) BS01 FES ? GO:0008901 ... Q8GI16 N/A
    504975 6llh:F (1.99) BS01 FES ? GO:0008901 ... Q8GI16 N/A
    504976 6llk:A (2.3) BS01 FES ? GO:0016491 ... Q84II6 N/A
    504977 6llk:A (2.3) BS02 FE2 ? GO:0016491 ... Q84II6 N/A
    504978 6llk:A (2.3) BS03 WBP ? GO:0016491 ... Q84II6 N/A
    504979 6llm:A (1.9) BS01 FE2 ? GO:0016491 ... Q84II6 N/A
    504980 6llm:A (1.9) BS02 FES ? GO:0016491 ... Q84II6 N/A
    504981 6llm:A (1.9) BS03 BPY ? GO:0016491 ... Q84II6 N/A
    504982 6llw:A (2.256) BS01 UDP 2.4.1.360 GO:0008194 ... A0A0A1HA03 32699169
    504983 6llw:B (2.256) BS01 UDP 2.4.1.360 GO:0008194 ... A0A0A1HA03 32699169
    504984 6llx:A (1.581) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 33087132
    504985 6llx:B (1.581) BS01 GSH 2.5.1.18 GO:0000302 ... P09211 33087132
    504986 6lly:A (2.8) BS01 BEF 7.2.2.10 GO:0000045 ... P16615 32851169
    504987 6lly:A (2.8) BS02 MG 7.2.2.10 GO:0000045 ... P16615 32851169
    504988 6llz:A (2.006) BS01 UPG 2.4.1.360 GO:0008194 ... A0A0A1HA03 32699169 MOAD: Kd=47.88uM
    504989 6llz:B (2.006) BS01 UPG 2.4.1.360 GO:0008194 ... A0A0A1HA03 32699169 MOAD: Kd=47.88uM
    504990 6lm0:A (2.65) BS01 RET N/A GO:0005216 ... N/A 33028840
    504991 6lm0:B (2.65) BS01 RET N/A GO:0005216 ... N/A 33028840
    504992 6lm0:C (2.65) BS01 RET N/A GO:0005216 ... N/A 33028840
    504993 6lm1:A (1.9) BS01 RET ? GO:0005216 ... A0A218QMM7 33028840
    504994 6lm1:A (1.9) BS02 MG ? GO:0005216 ... A0A218QMM7 33028840
    504995 6lm1:B (1.9) BS01 RET ? GO:0005216 ... A0A218QMM7 33028840
    504996 6lm1:C (1.9) BS01 RET ? GO:0005216 ... A0A218QMM7 33028840
    504997 6lm1:C (1.9) BS02 MG ? GO:0005216 ... A0A218QMM7 33028840
    504998 6lm2:A (2.13008) BS01 ZN ? GO:0005737 ... P76344 N/A
    504999 6lm2:A (2.13008) BS02 ZN ? GO:0005737 ... P76344 N/A
    505000 6lmi:A (2.5) BS01 EJ9 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497 32773094

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).