SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    505401 6lqm:N (3.09) BS02 rna ? GO:0000027 ... P62913 32669547
    505402 6lqm:O (3.09) BS01 rna ? GO:0001501 ... P63173 32669547
    505403 6lqm:P (3.09) BS01 rna ? GO:0002181 ... P62891 32669547
    505404 6lqm:P (3.09) BS02 rna ? GO:0002181 ... P62891 32669547
    505405 6lqm:Q (3.09) BS01 rna ? GO:0001824 ... P26373 32669547
    505406 6lqm:Q (3.09) BS02 rna ? GO:0001824 ... P26373 32669547
    505407 6lqm:R (3.09) BS01 rna ? GO:0002181 ... P62987 32669547
    505408 6lqm:S (3.09) BS01 rna ? GO:0002181 ... P50914 32669547
    505409 6lqm:T (3.09) BS01 rna ? GO:0002181 ... P62899 32669547
    505410 6lqm:U (3.09) BS01 rna ? GO:0002181 ... P61313 32669547
    505411 6lqm:U (3.09) BS02 rna ? GO:0002181 ... P61313 32669547
    505412 6lqm:V (3.09) BS01 rna ? GO:0002181 ... P40429 32669547
    505413 6lqm:W (3.09) BS01 rna ? GO:0002181 ... P83881 32669547
    505414 6lqm:X (3.09) BS01 rna ? GO:0002181 ... P61513 32669547
    505415 6lqm:Y (3.09) BS01 rna ? GO:0002181 ... P18621 32669547
    505416 6lqm:Y (3.09) BS02 rna ? GO:0002181 ... P18621 32669547
    505417 6lqm:Z (3.09) BS01 rna ? GO:0002181 ... Q07020 32669547
    505418 6lqm:a (3.09) BS01 rna ? GO:0002181 ... P84098 32669547
    505419 6lqm:b (3.09) BS01 rna ? GO:0002181 ... Q02543 32669547
    505420 6lqm:b (3.09) BS02 rna ? GO:0002181 ... Q02543 32669547
    505421 6lqm:c (3.09) BS01 rna ? GO:0002181 ... P46778 32669547
    505422 6lqm:c (3.09) BS02 rna ? GO:0002181 ... P46778 32669547
    505423 6lqm:d (3.09) BS01 rna ? GO:0002181 ... P35268 32669547
    505424 6lqm:e (3.09) BS01 rna ? GO:0000122 ... P62829 32669547
    505425 6lqm:f (3.09) BS01 rna ? GO:0000027 ... P83731 32669547
    505426 6lqm:g (3.09) BS01 rna ? GO:0002181 ... P62750 32669547
    505427 6lqm:g (3.09) BS02 rna ? GO:0002181 ... P62750 32669547
    505428 6lqm:h (3.09) BS01 rna ? GO:0002181 ... P61254 32669547
    505429 6lqm:h (3.09) BS02 rna ? GO:0002181 ... P61254 32669547
    505430 6lqm:i (3.09) BS01 rna ? GO:0002181 ... P61353 32669547
    505431 6lqm:l (3.09) BS01 rna ? GO:0002181 ... P46779 32669547
    505432 6lqm:m (3.09) BS01 rna ? GO:0002181 ... P62917 32669547
    505433 6lqm:m (3.09) BS02 MG ? GO:0002181 ... P62917 32669547
    505434 6lqm:r (3.09) BS01 rna ? GO:0000027 ... P46777 32669547
    505435 6lqm:r (3.09) BS02 rna ? GO:0000027 ... P46777 32669547
    505436 6lqm:t (3.09) BS01 rna ? GO:0002181 ... P62910 32669547
    505437 6lqm:t (3.09) BS02 MG ? GO:0002181 ... P62910 32669547
    505438 6lqm:u (3.09) BS01 rna ? GO:0000049 ... P18077 32669547
    505439 6lqm:v (3.09) BS01 rna ? GO:0002181 ... Q02878 32669547
    505440 6lqm:w (3.09) BS01 rna ? GO:0000463 ... P18124 32669547
    505441 6lqm:w (3.09) BS02 rna ? GO:0000463 ... P18124 32669547
    505442 6lqm:w (3.09) BS03 MG ? GO:0000463 ... P18124 32669547
    505443 6lqp:3C (3.2) BS01 rna 2.1.1.- GO:0000451 ... P15646 32943522
    505444 6lqp:3D (3.2) BS01 rna ? GO:0000154 ... Q12460 32943522
    505445 6lqp:3D (3.2) BS02 rna ? GO:0000154 ... Q12460 32943522
    505446 6lqp:3E (3.2) BS01 rna ? GO:0000447 ... Q12499 32943522
    505447 6lqp:3E (3.2) BS02 rna ? GO:0000447 ... Q12499 32943522
    505448 6lqp:3F (3.2) BS01 rna ? GO:0000447 ... Q06506 32943522
    505449 6lqp:3G (3.2) BS01 rna ? GO:0000245 ... P39990 32943522
    505450 6lqp:3H (3.2) BS01 rna ? GO:0000245 ... P39990 32943522
    505451 6lqp:5B (3.2) BS01 rna ? GO:0000447 ... Q08492 32943522
    505452 6lqp:5C (3.2) BS01 rna ? GO:0000447 ... P40055 32943522
    505453 6lqp:5C (3.2) BS02 rna ? GO:0000447 ... P40055 32943522
    505454 6lqp:5C (3.2) BS03 rna ? GO:0000447 ... P40055 32943522
    505455 6lqp:5D (3.2) BS01 rna ? GO:0000447 ... P34247 32943522
    505456 6lqp:5D (3.2) BS02 rna ? GO:0000447 ... P34247 32943522
    505457 6lqp:5D (3.2) BS03 rna ? GO:0000447 ... P34247 32943522
    505458 6lqp:5E (3.2) BS01 rna ? GO:0000447 ... P47083 32943522
    505459 6lqp:5F (3.2) BS01 rna ? GO:0003723 ... P32899 32943522
    505460 6lqp:5F (3.2) BS02 rna ? GO:0003723 ... P32899 32943522
    505461 6lqp:5G (3.2) BS01 rna ? GO:0005515 ... P53941 32943522
    505462 6lqp:5G (3.2) BS02 rna ? GO:0005515 ... P53941 32943522
    505463 6lqp:5H (3.2) BS01 rna ? GO:0000447 ... Q12136 32943522
    505464 6lqp:5I (3.2) BS01 rna ? GO:0000462 ... P33750 32943522
    505465 6lqp:5I (3.2) BS02 rna ? GO:0000462 ... P33750 32943522
    505466 6lqp:5I (3.2) BS03 rna ? GO:0000462 ... P33750 32943522
    505467 6lqp:5J (3.2) BS01 rna ? GO:0000447 ... Q12035 32943522
    505468 6lqp:5J (3.2) BS02 rna ? GO:0000447 ... Q12035 32943522
    505469 6lqp:5K (3.2) BS01 rna ? GO:0000447 ... Q05498 32943522
    505470 6lqp:5K (3.2) BS02 rna ? GO:0000447 ... Q05498 32943522
    505471 6lqp:5K (3.2) BS03 rna ? GO:0000447 ... Q05498 32943522
    505472 6lqp:5K (3.2) BS04 ZN ? GO:0000447 ... Q05498 32943522
    505473 6lqp:A4 (3.2) BS01 rna ? GO:0000462 ... Q06679 32943522
    505474 6lqp:A5 (3.2) BS01 rna ? GO:0000462 ... Q04177 32943522
    505475 6lqp:A9 (3.2) BS01 rna ? GO:0000049 ... P38882 32943522
    505476 6lqp:AE (3.2) BS01 rna ? GO:0000447 ... P42945 32943522
    505477 6lqp:AE (3.2) BS02 rna ? GO:0000447 ... P42945 32943522
    505478 6lqp:AF (3.2) BS01 rna ? GO:0000462 ... Q04305 32943522
    505479 6lqp:AF (3.2) BS02 rna ? GO:0000462 ... Q04305 32943522
    505480 6lqp:AG (3.2) BS01 rna ? GO:0000462 ... Q02931 32943522
    505481 6lqp:AG (3.2) BS02 rna ? GO:0000462 ... Q02931 32943522
    505482 6lqp:B1 (3.2) BS01 rna ? GO:0000028 ... P25635 32943522
    505483 6lqp:B1 (3.2) BS02 rna ? GO:0000028 ... P25635 32943522
    505484 6lqp:B1 (3.2) BS03 rna ? GO:0000028 ... P25635 32943522
    505485 6lqp:B2 (3.2) BS01 rna ? GO:0000447 ... Q12220 32943522
    505486 6lqp:B3 (3.2) BS01 rna ? GO:0000447 ... Q05946 32943522
    505487 6lqp:B6 (3.2) BS01 rna ? GO:0000447 ... Q02354 32943522
    505488 6lqp:B8 (3.2) BS01 rna ? GO:0000292 ... P40362 32943522
    505489 6lqp:B8 (3.2) BS02 rna ? GO:0000292 ... P40362 32943522
    505490 6lqp:BE (3.2) BS01 rna ? GO:0003674 ... Q06078 32943522
    505491 6lqp:BE (3.2) BS02 rna ? GO:0003674 ... Q06078 32943522
    505492 6lqp:RA (3.2) BS01 rna ? GO:0000462 ... P48234 32943522
    505493 6lqp:RB (3.2) BS01 rna ? GO:0000447 ... P40079 32943522
    505494 6lqp:RC (3.2) BS01 rna ? GO:0000447 ... P25586 32943522
    505495 6lqp:RC (3.2) BS02 rna ? GO:0000447 ... P25586 32943522
    505496 6lqp:RE (3.2) BS01 rna ? GO:0000028 ... P53254 32943522
    505497 6lqp:RF (3.2) BS01 rna ? GO:0000028 ... P25368 32943522
    505498 6lqp:RG (3.2) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943522
    505499 6lqp:RH (3.2) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943522
    505500 6lqp:RI (3.2) BS01 rna ? GO:0000462 ... P36144 32943522
    505501 6lqp:RI (3.2) BS02 rna ? GO:0000462 ... P36144 32943522
    505502 6lqp:RJ (3.2) BS01 rna ? GO:0000462 ... Q08965 32943522
    505503 6lqp:RJ (3.2) BS02 rna ? GO:0000462 ... Q08965 32943522
    505504 6lqp:RJ (3.2) BS03 rna ? GO:0000462 ... Q08965 32943522
    505505 6lqp:RJ (3.2) BS04 GTP ? GO:0000462 ... Q08965 32943522
    505506 6lqp:RJ (3.2) BS05 MG ? GO:0000462 ... Q08965 32943522
    505507 6lqp:RK (3.2) BS01 rna ? GO:0000447 ... Q08096 32943522
    505508 6lqp:RL (3.2) BS01 rna 2.3.1.- GO:0000049 ... P53914 32943522
    505509 6lqp:RN (3.2) BS01 rna ? GO:0000028 ... Q99207 32943522
    505510 6lqp:RN (3.2) BS02 rna ? GO:0000028 ... Q99207 32943522
    505511 6lqp:RO (3.2) BS01 rna ? GO:0000028 ... Q06512 32943522
    505512 6lqp:RP (3.2) BS01 rna ? GO:0000447 ... P35194 32943522
    505513 6lqp:RP (3.2) BS02 rna ? GO:0000447 ... P35194 32943522
    505514 6lqp:RQ (3.2) BS01 rna ? GO:0000447 ... Q04500 32943522
    505515 6lqp:RQ (3.2) BS02 rna ? GO:0000447 ... Q04500 32943522
    505516 6lqp:RS (3.2) BS01 rna ? GO:0000447 ... P38333 32943522
    505517 6lqp:RT (3.2) BS01 rna N/A GO:0003723 ... N/A 32943522
    505518 6lqp:RV (3.2) BS01 rna ? GO:0000462 ... P40546 32943522
    505519 6lqp:RV (3.2) BS02 rna ? GO:0000462 ... P40546 32943522
    505520 6lqp:RV (3.2) BS03 rna ? GO:0000462 ... P40546 32943522
    505521 6lqp:RW (3.2) BS01 rna ? GO:0003674 ... P40470 32943522
    505522 6lqp:RY (3.2) BS01 rna ? GO:0000462 ... Q06631 32943522
    505523 6lqp:SC (3.2) BS01 rna ? GO:0000462 ... P33442 32943522
    505524 6lqp:SF (3.2) BS01 rna ? GO:0002181 ... P0CX35 32943522
    505525 6lqp:SG (3.2) BS01 rna ? GO:0000028 ... P26783 32943522
    505526 6lqp:SH (3.2) BS01 rna ? GO:0000462 ... P0CX37 32943522
    505527 6lqp:SI (3.2) BS01 rna ? GO:0002181 ... P26786 32943522
    505528 6lqp:SJ (3.2) BS01 rna ? GO:0000462 ... P0CX39 32943522
    505529 6lqp:SK (3.2) BS01 rna ? GO:0000462 ... O13516 32943522
    505530 6lqp:SM (3.2) BS01 rna ? GO:0000028 ... P0CX47 32943522
    505531 6lqp:SN (3.2) BS01 rna ? GO:0000028 ... P48589 32943522
    505532 6lqp:SO (3.2) BS01 rna ? GO:0000462 ... P05756 32943522
    505533 6lqp:SP (3.2) BS01 rna ? GO:0000028 ... P06367 32943522
    505534 6lqp:SR (3.2) BS01 rna ? GO:0000462 ... P0CX51 32943522
    505535 6lqp:SR (3.2) BS02 rna ? GO:0000462 ... P0CX51 32943522
    505536 6lqp:ST (3.2) BS01 rna ? GO:0000054 ... P0CX55 32943522
    505537 6lqp:SX (3.2) BS01 rna ? GO:0002181 ... Q3E7Y3 32943522
    505538 6lqp:SY (3.2) BS01 rna ? GO:0000462 ... P0CX29 32943522
    505539 6lqp:SZ (3.2) BS01 rna ? GO:0000462 ... P0CX31 32943522
    505540 6lqp:Sc (3.2) BS01 rna ? GO:0000028 ... P35997 32943522
    505541 6lqp:Sc (3.2) BS02 ZN ? GO:0000028 ... P35997 32943522
    505542 6lqp:Sd (3.2) BS01 rna ? GO:0000028 ... Q3E7X9 32943522
    505543 6lqq:3C (4.1) BS01 rna 2.1.1.- GO:0000451 ... P15646 32943522
    505544 6lqq:3D (4.1) BS01 rna ? GO:0000154 ... Q12460 32943522
    505545 6lqq:3D (4.1) BS02 rna ? GO:0000154 ... Q12460 32943522
    505546 6lqq:3E (4.1) BS01 rna ? GO:0000447 ... Q12499 32943522
    505547 6lqq:3E (4.1) BS02 rna ? GO:0000447 ... Q12499 32943522
    505548 6lqq:3F (4.1) BS01 rna ? GO:0000447 ... Q06506 32943522
    505549 6lqq:3G (4.1) BS01 rna ? GO:0000245 ... P39990 32943522
    505550 6lqq:3H (4.1) BS01 rna ? GO:0000245 ... P39990 32943522
    505551 6lqq:5C (4.1) BS01 rna ? GO:0000447 ... P40055 32943522
    505552 6lqq:5C (4.1) BS02 rna ? GO:0000447 ... P40055 32943522
    505553 6lqq:5C (4.1) BS03 rna ? GO:0000447 ... P40055 32943522
    505554 6lqq:5D (4.1) BS01 rna ? GO:0000447 ... P34247 32943522
    505555 6lqq:5D (4.1) BS02 rna ? GO:0000447 ... P34247 32943522
    505556 6lqq:5D (4.1) BS03 rna ? GO:0000447 ... P34247 32943522
    505557 6lqq:5E (4.1) BS01 rna ? GO:0000447 ... P47083 32943522
    505558 6lqq:5F (4.1) BS01 rna ? GO:0003723 ... P32899 32943522
    505559 6lqq:5F (4.1) BS02 rna ? GO:0003723 ... P32899 32943522
    505560 6lqq:5G (4.1) BS01 rna ? GO:0005515 ... P53941 32943522
    505561 6lqq:5H (4.1) BS01 rna ? GO:0000447 ... Q12136 32943522
    505562 6lqq:5I (4.1) BS01 rna ? GO:0000462 ... P33750 32943522
    505563 6lqq:5I (4.1) BS02 rna ? GO:0000462 ... P33750 32943522
    505564 6lqq:5I (4.1) BS03 rna ? GO:0000462 ... P33750 32943522
    505565 6lqq:5J (4.1) BS01 rna ? GO:0000447 ... Q12035 32943522
    505566 6lqq:5J (4.1) BS02 rna ? GO:0000447 ... Q12035 32943522
    505567 6lqq:5K (4.1) BS01 rna ? GO:0000447 ... Q05498 32943522
    505568 6lqq:5K (4.1) BS02 rna ? GO:0000447 ... Q05498 32943522
    505569 6lqq:5K (4.1) BS03 ZN ? GO:0000447 ... Q05498 32943522
    505570 6lqq:A4 (4.1) BS01 rna ? GO:0000462 ... Q06679 32943522
    505571 6lqq:A5 (4.1) BS01 rna ? GO:0000462 ... Q04177 32943522
    505572 6lqq:A9 (4.1) BS01 rna ? GO:0000049 ... P38882 32943522
    505573 6lqq:AE (4.1) BS01 rna ? GO:0000447 ... P42945 32943522
    505574 6lqq:AE (4.1) BS02 rna ? GO:0000447 ... P42945 32943522
    505575 6lqq:AF (4.1) BS01 rna ? GO:0000462 ... Q04305 32943522
    505576 6lqq:AF (4.1) BS02 rna ? GO:0000462 ... Q04305 32943522
    505577 6lqq:AG (4.1) BS01 rna ? GO:0000462 ... Q02931 32943522
    505578 6lqq:AG (4.1) BS02 rna ? GO:0000462 ... Q02931 32943522
    505579 6lqq:B1 (4.1) BS01 rna ? GO:0000028 ... P25635 32943522
    505580 6lqq:B1 (4.1) BS02 rna ? GO:0000028 ... P25635 32943522
    505581 6lqq:B1 (4.1) BS03 rna ? GO:0000028 ... P25635 32943522
    505582 6lqq:B2 (4.1) BS01 rna ? GO:0000447 ... Q12220 32943522
    505583 6lqq:B3 (4.1) BS01 rna ? GO:0000447 ... Q05946 32943522
    505584 6lqq:B6 (4.1) BS01 rna ? GO:0000447 ... Q02354 32943522
    505585 6lqq:B8 (4.1) BS01 rna ? GO:0000292 ... P40362 32943522
    505586 6lqq:B8 (4.1) BS02 rna ? GO:0000292 ... P40362 32943522
    505587 6lqq:BE (4.1) BS01 rna ? GO:0003674 ... Q06078 32943522
    505588 6lqq:BE (4.1) BS02 rna ? GO:0003674 ... Q06078 32943522
    505589 6lqq:RA (4.1) BS01 rna ? GO:0000462 ... P48234 32943522
    505590 6lqq:RB (4.1) BS01 rna ? GO:0000447 ... P40079 32943522
    505591 6lqq:RC (4.1) BS01 rna ? GO:0000447 ... P25586 32943522
    505592 6lqq:RC (4.1) BS02 rna ? GO:0000447 ... P25586 32943522
    505593 6lqq:RE (4.1) BS01 rna ? GO:0000028 ... P53254 32943522
    505594 6lqq:RF (4.1) BS01 rna ? GO:0000028 ... P25368 32943522
    505595 6lqq:RG (4.1) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943522
    505596 6lqq:RH (4.1) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943522
    505597 6lqq:RJ (4.1) BS01 rna ? GO:0000462 ... Q08965 32943522
    505598 6lqq:RJ (4.1) BS02 rna ? GO:0000462 ... Q08965 32943522
    505599 6lqq:RJ (4.1) BS03 rna ? GO:0000462 ... Q08965 32943522
    505600 6lqq:RJ (4.1) BS04 GTP ? GO:0000462 ... Q08965 32943522

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).