SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    505601 6lqq:RJ (4.1) BS05 MG ? GO:0000462 ... Q08965 32943522
    505602 6lqq:RK (4.1) BS01 rna ? GO:0000447 ... Q08096 32943522
    505603 6lqq:RL (4.1) BS01 rna 2.3.1.- GO:0000049 ... P53914 32943522
    505604 6lqq:RN (4.1) BS01 rna ? GO:0000028 ... Q99207 32943522
    505605 6lqq:RN (4.1) BS02 rna ? GO:0000028 ... Q99207 32943522
    505606 6lqq:RP (4.1) BS01 rna ? GO:0000447 ... P35194 32943522
    505607 6lqq:RP (4.1) BS02 rna ? GO:0000447 ... P35194 32943522
    505608 6lqq:RQ (4.1) BS01 rna ? GO:0000447 ... Q04500 32943522
    505609 6lqq:RQ (4.1) BS02 rna ? GO:0000447 ... Q04500 32943522
    505610 6lqq:RS (4.1) BS01 rna ? GO:0000447 ... P38333 32943522
    505611 6lqq:RT (4.1) BS01 rna N/A GO:0003723 ... N/A 32943522
    505612 6lqq:RV (4.1) BS01 rna ? GO:0000462 ... P40546 32943522
    505613 6lqq:RV (4.1) BS02 rna ? GO:0000462 ... P40546 32943522
    505614 6lqq:RV (4.1) BS03 rna ? GO:0000462 ... P40546 32943522
    505615 6lqq:RY (4.1) BS01 rna ? GO:0000462 ... Q06631 32943522
    505616 6lqq:SC (4.1) BS01 rna ? GO:0000462 ... P33442 32943522
    505617 6lqq:SF (4.1) BS01 rna ? GO:0002181 ... P0CX35 32943522
    505618 6lqq:SG (4.1) BS01 rna ? GO:0000028 ... P26783 32943522
    505619 6lqq:SH (4.1) BS01 rna ? GO:0000462 ... P0CX37 32943522
    505620 6lqq:SI (4.1) BS01 rna ? GO:0002181 ... P26786 32943522
    505621 6lqq:SJ (4.1) BS01 rna ? GO:0000462 ... P0CX39 32943522
    505622 6lqq:SK (4.1) BS01 rna ? GO:0000462 ... O13516 32943522
    505623 6lqq:SM (4.1) BS01 rna ? GO:0000028 ... P0CX47 32943522
    505624 6lqq:SO (4.1) BS01 rna ? GO:0000462 ... P05756 32943522
    505625 6lqq:SP (4.1) BS01 rna ? GO:0000028 ... P06367 32943522
    505626 6lqq:SR (4.1) BS01 rna ? GO:0000462 ... P0CX51 32943522
    505627 6lqq:SR (4.1) BS02 rna ? GO:0000462 ... P0CX51 32943522
    505628 6lqq:SX (4.1) BS01 rna ? GO:0002181 ... Q3E7Y3 32943522
    505629 6lqq:SY (4.1) BS01 rna ? GO:0000462 ... P0CX29 32943522
    505630 6lqq:SZ (4.1) BS01 rna ? GO:0000462 ... P0CX31 32943522
    505631 6lqq:Sc (4.1) BS01 rna ? GO:0000028 ... P35997 32943522
    505632 6lqq:Sc (4.1) BS02 ZN ? GO:0000028 ... P35997 32943522
    505633 6lqq:Sd (4.1) BS01 rna ? GO:0000028 ... Q3E7X9 32943522
    505634 6lqr:3C (8.6) BS01 rna 2.1.1.- GO:0000451 ... P15646 32943522
    505635 6lqr:3D (8.6) BS01 rna ? GO:0000154 ... Q12460 32943522
    505636 6lqr:3D (8.6) BS02 rna ? GO:0000154 ... Q12460 32943522
    505637 6lqr:3E (8.6) BS01 rna ? GO:0000447 ... Q12499 32943522
    505638 6lqr:3E (8.6) BS02 rna ? GO:0000447 ... Q12499 32943522
    505639 6lqr:3F (8.6) BS01 rna ? GO:0000447 ... Q06506 32943522
    505640 6lqr:3G (8.6) BS01 rna ? GO:0000245 ... P39990 32943522
    505641 6lqr:3H (8.6) BS01 rna ? GO:0000245 ... P39990 32943522
    505642 6lqr:5C (8.6) BS01 rna ? GO:0000447 ... P40055 32943522
    505643 6lqr:5C (8.6) BS02 rna ? GO:0000447 ... P40055 32943522
    505644 6lqr:5C (8.6) BS03 rna ? GO:0000447 ... P40055 32943522
    505645 6lqr:5D (8.6) BS01 rna ? GO:0000447 ... P34247 32943522
    505646 6lqr:5D (8.6) BS02 rna ? GO:0000447 ... P34247 32943522
    505647 6lqr:5E (8.6) BS01 rna ? GO:0000447 ... P47083 32943522
    505648 6lqr:5F (8.6) BS01 rna ? GO:0003723 ... P32899 32943522
    505649 6lqr:5G (8.6) BS01 rna ? GO:0005515 ... P53941 32943522
    505650 6lqr:5H (8.6) BS01 rna ? GO:0000447 ... Q12136 32943522
    505651 6lqr:5I (8.6) BS01 rna ? GO:0000462 ... P33750 32943522
    505652 6lqr:5I (8.6) BS02 rna ? GO:0000462 ... P33750 32943522
    505653 6lqr:5I (8.6) BS03 rna ? GO:0000462 ... P33750 32943522
    505654 6lqr:5J (8.6) BS01 rna ? GO:0000447 ... Q12035 32943522
    505655 6lqr:5J (8.6) BS02 rna ? GO:0000447 ... Q12035 32943522
    505656 6lqr:5K (8.6) BS01 rna ? GO:0000447 ... Q05498 32943522
    505657 6lqr:5K (8.6) BS02 rna ? GO:0000447 ... Q05498 32943522
    505658 6lqr:5K (8.6) BS03 ZN ? GO:0000447 ... Q05498 32943522
    505659 6lqr:A4 (8.6) BS01 rna ? GO:0000462 ... Q06679 32943522
    505660 6lqr:A9 (8.6) BS01 rna ? GO:0000049 ... P38882 32943522
    505661 6lqr:AE (8.6) BS01 rna ? GO:0000447 ... P42945 32943522
    505662 6lqr:AE (8.6) BS02 rna ? GO:0000447 ... P42945 32943522
    505663 6lqr:AF (8.6) BS01 rna ? GO:0000462 ... Q04305 32943522
    505664 6lqr:AF (8.6) BS02 rna ? GO:0000462 ... Q04305 32943522
    505665 6lqr:AG (8.6) BS01 rna ? GO:0000462 ... Q02931 32943522
    505666 6lqr:AG (8.6) BS02 rna ? GO:0000462 ... Q02931 32943522
    505667 6lqr:B1 (8.6) BS01 rna ? GO:0000028 ... P25635 32943522
    505668 6lqr:B1 (8.6) BS02 rna ? GO:0000028 ... P25635 32943522
    505669 6lqr:B1 (8.6) BS03 rna ? GO:0000028 ... P25635 32943522
    505670 6lqr:B1 (8.6) BS04 peptide ? GO:0000028 ... P25635 32943522
    505671 6lqr:B2 (8.6) BS01 rna ? GO:0000447 ... Q12220 32943522
    505672 6lqr:B3 (8.6) BS01 rna ? GO:0000447 ... Q05946 32943522
    505673 6lqr:B6 (8.6) BS01 rna ? GO:0000447 ... Q02354 32943522
    505674 6lqr:B8 (8.6) BS01 rna ? GO:0000292 ... P40362 32943522
    505675 6lqr:B8 (8.6) BS02 rna ? GO:0000292 ... P40362 32943522
    505676 6lqr:BE (8.6) BS01 rna ? GO:0003674 ... Q06078 32943522
    505677 6lqr:BE (8.6) BS02 rna ? GO:0003674 ... Q06078 32943522
    505678 6lqr:RA (8.6) BS01 rna ? GO:0000462 ... P48234 32943522
    505679 6lqr:RB (8.6) BS01 rna ? GO:0000447 ... P40079 32943522
    505680 6lqr:RE (8.6) BS01 rna ? GO:0000028 ... P53254 32943522
    505681 6lqr:RE (8.6) BS02 peptide ? GO:0000028 ... P53254 32943522
    505682 6lqr:RF (8.6) BS01 rna ? GO:0000028 ... P25368 32943522
    505683 6lqr:RG (8.6) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943522
    505684 6lqr:RH (8.6) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943522
    505685 6lqr:RJ (8.6) BS01 rna ? GO:0000462 ... Q08965 32943522
    505686 6lqr:RJ (8.6) BS02 rna ? GO:0000462 ... Q08965 32943522
    505687 6lqr:RJ (8.6) BS03 GTP ? GO:0000462 ... Q08965 32943522
    505688 6lqr:RJ (8.6) BS04 MG ? GO:0000462 ... Q08965 32943522
    505689 6lqr:RK (8.6) BS01 rna ? GO:0000447 ... Q08096 32943522
    505690 6lqr:RL (8.6) BS01 rna 2.3.1.- GO:0000049 ... P53914 32943522
    505691 6lqr:RN (8.6) BS01 rna ? GO:0000028 ... Q99207 32943522
    505692 6lqr:RN (8.6) BS02 rna ? GO:0000028 ... Q99207 32943522
    505693 6lqr:RP (8.6) BS01 rna ? GO:0000447 ... P35194 32943522
    505694 6lqr:RP (8.6) BS02 rna ? GO:0000447 ... P35194 32943522
    505695 6lqr:RQ (8.6) BS01 rna ? GO:0000447 ... Q04500 32943522
    505696 6lqr:RQ (8.6) BS02 rna ? GO:0000447 ... Q04500 32943522
    505697 6lqr:RS (8.6) BS01 rna ? GO:0000447 ... P38333 32943522
    505698 6lqr:RT (8.6) BS01 rna N/A GO:0003723 ... N/A 32943522
    505699 6lqr:RY (8.6) BS01 rna ? GO:0000462 ... Q06631 32943522
    505700 6lqr:SC (8.6) BS01 rna ? GO:0000462 ... P33442 32943522
    505701 6lqr:SF (8.6) BS01 rna ? GO:0002181 ... P0CX35 32943522
    505702 6lqr:SG (8.6) BS01 rna ? GO:0000028 ... P26783 32943522
    505703 6lqr:SH (8.6) BS01 rna ? GO:0000462 ... P0CX37 32943522
    505704 6lqr:SI (8.6) BS01 rna ? GO:0002181 ... P26786 32943522
    505705 6lqr:SJ (8.6) BS01 rna ? GO:0000462 ... P0CX39 32943522
    505706 6lqr:SK (8.6) BS01 rna ? GO:0000462 ... O13516 32943522
    505707 6lqr:SM (8.6) BS01 rna ? GO:0000028 ... P0CX47 32943522
    505708 6lqr:SO (8.6) BS01 rna ? GO:0000462 ... P05756 32943522
    505709 6lqr:SP (8.6) BS01 rna ? GO:0000028 ... P06367 32943522
    505710 6lqr:SR (8.6) BS01 rna ? GO:0000462 ... P0CX51 32943522
    505711 6lqr:SX (8.6) BS01 rna ? GO:0002181 ... Q3E7Y3 32943522
    505712 6lqr:SY (8.6) BS01 rna ? GO:0000462 ... P0CX29 32943522
    505713 6lqr:SZ (8.6) BS01 rna ? GO:0000462 ... P0CX31 32943522
    505714 6lqr:Sc (8.6) BS01 rna ? GO:0000028 ... P35997 32943522
    505715 6lqr:Sc (8.6) BS02 ZN ? GO:0000028 ... P35997 32943522
    505716 6lqr:Sd (8.6) BS01 rna ? GO:0000028 ... Q3E7X9 32943522
    505717 6lqs:3C (3.8) BS01 rna 2.1.1.- GO:0000451 ... P15646 32943522
    505718 6lqs:3D (3.8) BS01 rna ? GO:0000154 ... Q12460 32943522
    505719 6lqs:3D (3.8) BS02 rna ? GO:0000154 ... Q12460 32943522
    505720 6lqs:3E (3.8) BS01 rna ? GO:0000447 ... Q12499 32943522
    505721 6lqs:3E (3.8) BS02 rna ? GO:0000447 ... Q12499 32943522
    505722 6lqs:3F (3.8) BS01 rna ? GO:0000447 ... Q06506 32943522
    505723 6lqs:3G (3.8) BS01 rna ? GO:0000245 ... P39990 32943522
    505724 6lqs:3H (3.8) BS01 rna ? GO:0000245 ... P39990 32943522
    505725 6lqs:5C (3.8) BS01 rna ? GO:0000447 ... P40055 32943522
    505726 6lqs:5C (3.8) BS02 rna ? GO:0000447 ... P40055 32943522
    505727 6lqs:5C (3.8) BS03 rna ? GO:0000447 ... P40055 32943522
    505728 6lqs:5D (3.8) BS01 rna ? GO:0000447 ... P34247 32943522
    505729 6lqs:5D (3.8) BS02 rna ? GO:0000447 ... P34247 32943522
    505730 6lqs:5E (3.8) BS01 rna ? GO:0000447 ... P47083 32943522
    505731 6lqs:5F (3.8) BS01 rna ? GO:0003723 ... P32899 32943522
    505732 6lqs:5G (3.8) BS01 rna ? GO:0005515 ... P53941 32943522
    505733 6lqs:5H (3.8) BS01 rna ? GO:0000447 ... Q12136 32943522
    505734 6lqs:5H (3.8) BS02 rna ? GO:0000447 ... Q12136 32943522
    505735 6lqs:5I (3.8) BS01 rna ? GO:0000462 ... P33750 32943522
    505736 6lqs:5I (3.8) BS02 rna ? GO:0000462 ... P33750 32943522
    505737 6lqs:5J (3.8) BS01 rna ? GO:0000447 ... Q12035 32943522
    505738 6lqs:5J (3.8) BS02 rna ? GO:0000447 ... Q12035 32943522
    505739 6lqs:5K (3.8) BS01 rna ? GO:0000447 ... Q05498 32943522
    505740 6lqs:5K (3.8) BS02 ZN ? GO:0000447 ... Q05498 32943522
    505741 6lqs:A4 (3.8) BS01 rna ? GO:0000462 ... Q06679 32943522
    505742 6lqs:A9 (3.8) BS01 rna ? GO:0000049 ... P38882 32943522
    505743 6lqs:AE (3.8) BS01 rna ? GO:0000447 ... P42945 32943522
    505744 6lqs:AE (3.8) BS02 rna ? GO:0000447 ... P42945 32943522
    505745 6lqs:AF (3.8) BS01 rna ? GO:0000462 ... Q04305 32943522
    505746 6lqs:AF (3.8) BS02 rna ? GO:0000462 ... Q04305 32943522
    505747 6lqs:AG (3.8) BS01 rna ? GO:0000462 ... Q02931 32943522
    505748 6lqs:AG (3.8) BS02 rna ? GO:0000462 ... Q02931 32943522
    505749 6lqs:B1 (3.8) BS01 rna ? GO:0000028 ... P25635 32943522
    505750 6lqs:B1 (3.8) BS02 rna ? GO:0000028 ... P25635 32943522
    505751 6lqs:B1 (3.8) BS03 rna ? GO:0000028 ... P25635 32943522
    505752 6lqs:B2 (3.8) BS01 rna ? GO:0000447 ... Q12220 32943522
    505753 6lqs:B3 (3.8) BS01 rna ? GO:0000447 ... Q05946 32943522
    505754 6lqs:B6 (3.8) BS01 rna ? GO:0000447 ... Q02354 32943522
    505755 6lqs:B8 (3.8) BS01 rna ? GO:0000292 ... P40362 32943522
    505756 6lqs:BE (3.8) BS01 rna ? GO:0003674 ... Q06078 32943522
    505757 6lqs:BE (3.8) BS02 rna ? GO:0003674 ... Q06078 32943522
    505758 6lqs:RE (3.8) BS01 rna ? GO:0000028 ... P53254 32943522
    505759 6lqs:RF (3.8) BS01 rna ? GO:0000028 ... P25368 32943522
    505760 6lqs:RG (3.8) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943522
    505761 6lqs:RH (3.8) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943522
    505762 6lqs:RJ (3.8) BS01 rna ? GO:0000462 ... Q08965 32943522
    505763 6lqs:RJ (3.8) BS02 rna ? GO:0000462 ... Q08965 32943522
    505764 6lqs:RJ (3.8) BS03 GTP ? GO:0000462 ... Q08965 32943522
    505765 6lqs:RJ (3.8) BS04 MG ? GO:0000462 ... Q08965 32943522
    505766 6lqs:RK (3.8) BS01 rna ? GO:0000447 ... Q08096 32943522
    505767 6lqs:RN (3.8) BS01 rna ? GO:0000028 ... Q99207 32943522
    505768 6lqs:RN (3.8) BS02 rna ? GO:0000028 ... Q99207 32943522
    505769 6lqs:RP (3.8) BS01 rna ? GO:0000447 ... P35194 32943522
    505770 6lqs:RQ (3.8) BS01 rna ? GO:0000447 ... Q04500 32943522
    505771 6lqs:RQ (3.8) BS02 rna ? GO:0000447 ... Q04500 32943522
    505772 6lqs:RS (3.8) BS01 rna ? GO:0000447 ... P38333 32943522
    505773 6lqs:RT (3.8) BS01 rna N/A GO:0003723 ... N/A 32943522
    505774 6lqs:RW (3.8) BS01 rna ? GO:0003674 ... P40470 32943522
    505775 6lqs:SC (3.8) BS01 rna ? GO:0000462 ... P33442 32943522
    505776 6lqs:SF (3.8) BS01 rna ? GO:0002181 ... P0CX35 32943522
    505777 6lqs:SG (3.8) BS01 rna ? GO:0000028 ... P26783 32943522
    505778 6lqs:SH (3.8) BS01 rna ? GO:0000462 ... P0CX37 32943522
    505779 6lqs:SI (3.8) BS01 rna ? GO:0002181 ... P26786 32943522
    505780 6lqs:SJ (3.8) BS01 rna ? GO:0000462 ... P0CX39 32943522
    505781 6lqs:SK (3.8) BS01 rna ? GO:0000462 ... O13516 32943522
    505782 6lqs:SM (3.8) BS01 rna ? GO:0000028 ... P0CX47 32943522
    505783 6lqs:SO (3.8) BS01 rna ? GO:0000462 ... P05756 32943522
    505784 6lqs:SP (3.8) BS01 rna ? GO:0000028 ... P06367 32943522
    505785 6lqs:SR (3.8) BS01 rna ? GO:0000462 ... P0CX51 32943522
    505786 6lqs:SX (3.8) BS01 rna ? GO:0002181 ... Q3E7Y3 32943522
    505787 6lqs:SY (3.8) BS01 rna ? GO:0000462 ... P0CX29 32943522
    505788 6lqs:SZ (3.8) BS01 rna ? GO:0000462 ... P0CX31 32943522
    505789 6lqs:Sc (3.8) BS01 rna ? GO:0000028 ... P35997 32943522
    505790 6lqs:Sd (3.8) BS01 rna ? GO:0000028 ... Q3E7X9 32943522
    505791 6lqt:3C (4.9) BS01 rna 2.1.1.- GO:0000451 ... P15646 32943522
    505792 6lqt:3D (4.9) BS01 rna ? GO:0000154 ... Q12460 32943522
    505793 6lqt:3D (4.9) BS02 rna ? GO:0000154 ... Q12460 32943522
    505794 6lqt:3E (4.9) BS01 rna ? GO:0000447 ... Q12499 32943522
    505795 6lqt:3E (4.9) BS02 rna ? GO:0000447 ... Q12499 32943522
    505796 6lqt:3F (4.9) BS01 rna ? GO:0000447 ... Q06506 32943522
    505797 6lqt:3G (4.9) BS01 rna ? GO:0000245 ... P39990 32943522
    505798 6lqt:3H (4.9) BS01 rna ? GO:0000245 ... P39990 32943522
    505799 6lqt:5C (4.9) BS01 rna ? GO:0000447 ... P40055 32943522
    505800 6lqt:5C (4.9) BS02 rna ? GO:0000447 ... P40055 32943522

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).