SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    505801 6lqt:5C (4.9) BS03 rna ? GO:0000447 ... P40055 32943522
    505802 6lqt:5D (4.9) BS01 rna ? GO:0000447 ... P34247 32943522
    505803 6lqt:5D (4.9) BS02 rna ? GO:0000447 ... P34247 32943522
    505804 6lqt:5E (4.9) BS01 rna ? GO:0000447 ... P47083 32943522
    505805 6lqt:5F (4.9) BS01 rna ? GO:0003723 ... P32899 32943522
    505806 6lqt:5G (4.9) BS01 rna ? GO:0005515 ... P53941 32943522
    505807 6lqt:5H (4.9) BS01 rna ? GO:0000447 ... Q12136 32943522
    505808 6lqt:5H (4.9) BS02 rna ? GO:0000447 ... Q12136 32943522
    505809 6lqt:5I (4.9) BS01 rna ? GO:0000462 ... P33750 32943522
    505810 6lqt:5I (4.9) BS02 rna ? GO:0000462 ... P33750 32943522
    505811 6lqt:5J (4.9) BS01 rna ? GO:0000447 ... Q12035 32943522
    505812 6lqt:5J (4.9) BS02 rna ? GO:0000447 ... Q12035 32943522
    505813 6lqt:5K (4.9) BS01 rna ? GO:0000447 ... Q05498 32943522
    505814 6lqt:5K (4.9) BS02 ZN ? GO:0000447 ... Q05498 32943522
    505815 6lqt:A4 (4.9) BS01 rna ? GO:0000462 ... Q06679 32943522
    505816 6lqt:A9 (4.9) BS01 rna ? GO:0000049 ... P38882 32943522
    505817 6lqt:AE (4.9) BS01 rna ? GO:0000447 ... P42945 32943522
    505818 6lqt:AF (4.9) BS01 rna ? GO:0000462 ... Q04305 32943522
    505819 6lqt:AF (4.9) BS02 rna ? GO:0000462 ... Q04305 32943522
    505820 6lqt:AG (4.9) BS01 rna ? GO:0000462 ... Q02931 32943522
    505821 6lqt:AG (4.9) BS02 rna ? GO:0000462 ... Q02931 32943522
    505822 6lqt:B1 (4.9) BS01 rna ? GO:0000028 ... P25635 32943522
    505823 6lqt:B1 (4.9) BS02 rna ? GO:0000028 ... P25635 32943522
    505824 6lqt:B1 (4.9) BS03 rna ? GO:0000028 ... P25635 32943522
    505825 6lqt:B2 (4.9) BS01 rna ? GO:0000447 ... Q12220 32943522
    505826 6lqt:B3 (4.9) BS01 rna ? GO:0000447 ... Q05946 32943522
    505827 6lqt:B6 (4.9) BS01 rna ? GO:0000447 ... Q02354 32943522
    505828 6lqt:B8 (4.9) BS01 rna ? GO:0000292 ... P40362 32943522
    505829 6lqt:BE (4.9) BS01 rna ? GO:0003674 ... Q06078 32943522
    505830 6lqt:BE (4.9) BS02 rna ? GO:0003674 ... Q06078 32943522
    505831 6lqt:RE (4.9) BS01 rna ? GO:0000028 ... P53254 32943522
    505832 6lqt:RF (4.9) BS01 rna ? GO:0000028 ... P25368 32943522
    505833 6lqt:RH (4.9) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943522
    505834 6lqt:RJ (4.9) BS01 rna ? GO:0000462 ... Q08965 32943522
    505835 6lqt:RJ (4.9) BS02 rna ? GO:0000462 ... Q08965 32943522
    505836 6lqt:RJ (4.9) BS03 GTP ? GO:0000462 ... Q08965 32943522
    505837 6lqt:RJ (4.9) BS04 MG ? GO:0000462 ... Q08965 32943522
    505838 6lqt:RK (4.9) BS01 rna ? GO:0000447 ... Q08096 32943522
    505839 6lqt:RN (4.9) BS01 rna ? GO:0000028 ... Q99207 32943522
    505840 6lqt:RN (4.9) BS02 rna ? GO:0000028 ... Q99207 32943522
    505841 6lqt:RP (4.9) BS01 rna ? GO:0000447 ... P35194 32943522
    505842 6lqt:RQ (4.9) BS01 rna ? GO:0000447 ... Q04500 32943522
    505843 6lqt:RQ (4.9) BS02 rna ? GO:0000447 ... Q04500 32943522
    505844 6lqt:RT (4.9) BS01 rna N/A GO:0003723 ... N/A 32943522
    505845 6lqt:SC (4.9) BS01 rna ? GO:0000462 ... P33442 32943522
    505846 6lqt:SF (4.9) BS01 rna ? GO:0002181 ... P0CX35 32943522
    505847 6lqt:SG (4.9) BS01 rna ? GO:0000028 ... P26783 32943522
    505848 6lqt:SH (4.9) BS01 rna ? GO:0000462 ... P0CX37 32943522
    505849 6lqt:SI (4.9) BS01 rna ? GO:0002181 ... P26786 32943522
    505850 6lqt:SJ (4.9) BS01 rna ? GO:0000462 ... P0CX39 32943522
    505851 6lqt:SK (4.9) BS01 rna ? GO:0000462 ... O13516 32943522
    505852 6lqt:SM (4.9) BS01 rna ? GO:0000028 ... P0CX47 32943522
    505853 6lqt:SO (4.9) BS01 rna ? GO:0000462 ... P05756 32943522
    505854 6lqt:SP (4.9) BS01 rna ? GO:0000028 ... P06367 32943522
    505855 6lqt:SR (4.9) BS01 rna ? GO:0000462 ... P0CX51 32943522
    505856 6lqt:SX (4.9) BS01 rna ? GO:0002181 ... Q3E7Y3 32943522
    505857 6lqt:SY (4.9) BS01 rna ? GO:0000462 ... P0CX29 32943522
    505858 6lqt:SZ (4.9) BS01 rna ? GO:0000462 ... P0CX31 32943522
    505859 6lqt:Sc (4.9) BS01 rna ? GO:0000028 ... P35997 32943522
    505860 6lqt:Sd (4.9) BS01 rna ? GO:0000028 ... Q3E7X9 32943522
    505861 6lqu:3C (3.7) BS01 rna 2.1.1.- GO:0000451 ... P15646 32943522
    505862 6lqu:3D (3.7) BS01 rna ? GO:0000154 ... Q12460 32943522
    505863 6lqu:3D (3.7) BS02 rna ? GO:0000154 ... Q12460 32943522
    505864 6lqu:3E (3.7) BS01 rna ? GO:0000447 ... Q12499 32943522
    505865 6lqu:3E (3.7) BS02 rna ? GO:0000447 ... Q12499 32943522
    505866 6lqu:3F (3.7) BS01 rna ? GO:0000447 ... Q06506 32943522
    505867 6lqu:3G (3.7) BS01 rna ? GO:0000245 ... P39990 32943522
    505868 6lqu:3H (3.7) BS01 rna ? GO:0000245 ... P39990 32943522
    505869 6lqu:5B (3.7) BS01 rna ? GO:0000447 ... Q08492 32943522
    505870 6lqu:5C (3.7) BS01 rna ? GO:0000447 ... P40055 32943522
    505871 6lqu:5C (3.7) BS02 rna ? GO:0000447 ... P40055 32943522
    505872 6lqu:5C (3.7) BS03 rna ? GO:0000447 ... P40055 32943522
    505873 6lqu:5D (3.7) BS01 rna ? GO:0000447 ... P34247 32943522
    505874 6lqu:5D (3.7) BS02 rna ? GO:0000447 ... P34247 32943522
    505875 6lqu:5D (3.7) BS03 rna ? GO:0000447 ... P34247 32943522
    505876 6lqu:5E (3.7) BS01 rna ? GO:0000447 ... P47083 32943522
    505877 6lqu:5F (3.7) BS01 rna ? GO:0003723 ... P32899 32943522
    505878 6lqu:5F (3.7) BS02 rna ? GO:0003723 ... P32899 32943522
    505879 6lqu:5G (3.7) BS01 rna ? GO:0005515 ... P53941 32943522
    505880 6lqu:5G (3.7) BS02 rna ? GO:0005515 ... P53941 32943522
    505881 6lqu:5H (3.7) BS01 rna ? GO:0000447 ... Q12136 32943522
    505882 6lqu:5I (3.7) BS01 rna ? GO:0000462 ... P33750 32943522
    505883 6lqu:5I (3.7) BS02 rna ? GO:0000462 ... P33750 32943522
    505884 6lqu:5I (3.7) BS03 rna ? GO:0000462 ... P33750 32943522
    505885 6lqu:5J (3.7) BS01 rna ? GO:0000447 ... Q12035 32943522
    505886 6lqu:5J (3.7) BS02 rna ? GO:0000447 ... Q12035 32943522
    505887 6lqu:5K (3.7) BS01 rna ? GO:0000447 ... Q05498 32943522
    505888 6lqu:5K (3.7) BS02 rna ? GO:0000447 ... Q05498 32943522
    505889 6lqu:5K (3.7) BS03 rna ? GO:0000447 ... Q05498 32943522
    505890 6lqu:5K (3.7) BS04 ZN ? GO:0000447 ... Q05498 32943522
    505891 6lqu:A4 (3.7) BS01 rna ? GO:0000462 ... Q06679 32943522
    505892 6lqu:A5 (3.7) BS01 rna ? GO:0000462 ... Q04177 32943522
    505893 6lqu:A9 (3.7) BS01 rna ? GO:0000049 ... P38882 32943522
    505894 6lqu:AE (3.7) BS01 rna ? GO:0000447 ... P42945 32943522
    505895 6lqu:AE (3.7) BS02 rna ? GO:0000447 ... P42945 32943522
    505896 6lqu:AF (3.7) BS01 rna ? GO:0000462 ... Q04305 32943522
    505897 6lqu:AF (3.7) BS02 rna ? GO:0000462 ... Q04305 32943522
    505898 6lqu:AG (3.7) BS01 rna ? GO:0000462 ... Q02931 32943522
    505899 6lqu:AG (3.7) BS02 rna ? GO:0000462 ... Q02931 32943522
    505900 6lqu:B1 (3.7) BS01 rna ? GO:0000028 ... P25635 32943522
    505901 6lqu:B1 (3.7) BS02 rna ? GO:0000028 ... P25635 32943522
    505902 6lqu:B1 (3.7) BS03 rna ? GO:0000028 ... P25635 32943522
    505903 6lqu:B2 (3.7) BS01 rna ? GO:0000447 ... Q12220 32943522
    505904 6lqu:B3 (3.7) BS01 rna ? GO:0000447 ... Q05946 32943522
    505905 6lqu:B6 (3.7) BS01 rna ? GO:0000447 ... Q02354 32943522
    505906 6lqu:B8 (3.7) BS01 rna ? GO:0000292 ... P40362 32943522
    505907 6lqu:B8 (3.7) BS02 rna ? GO:0000292 ... P40362 32943522
    505908 6lqu:BE (3.7) BS01 rna ? GO:0003674 ... Q06078 32943522
    505909 6lqu:BE (3.7) BS02 rna ? GO:0003674 ... Q06078 32943522
    505910 6lqu:RA (3.7) BS01 rna ? GO:0000462 ... P48234 32943522
    505911 6lqu:RB (3.7) BS01 rna ? GO:0000447 ... P40079 32943522
    505912 6lqu:RC (3.7) BS01 rna ? GO:0000447 ... P25586 32943522
    505913 6lqu:RD (3.7) BS01 rna ? GO:0000447 ... Q05022 32943522
    505914 6lqu:RE (3.7) BS01 rna ? GO:0000028 ... P53254 32943522
    505915 6lqu:RG (3.7) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943522
    505916 6lqu:RH (3.7) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943522
    505917 6lqu:RI (3.7) BS01 rna ? GO:0000462 ... P36144 32943522
    505918 6lqu:RI (3.7) BS02 rna ? GO:0000462 ... P36144 32943522
    505919 6lqu:RJ (3.7) BS01 rna ? GO:0000462 ... Q08965 32943522
    505920 6lqu:RJ (3.7) BS02 rna ? GO:0000462 ... Q08965 32943522
    505921 6lqu:RJ (3.7) BS03 rna ? GO:0000462 ... Q08965 32943522
    505922 6lqu:RJ (3.7) BS04 GTP ? GO:0000462 ... Q08965 32943522
    505923 6lqu:RJ (3.7) BS05 MG ? GO:0000462 ... Q08965 32943522
    505924 6lqu:RK (3.7) BS01 rna ? GO:0000447 ... Q08096 32943522
    505925 6lqu:RL (3.7) BS01 rna 2.3.1.- GO:0000049 ... P53914 32943522
    505926 6lqu:RN (3.7) BS01 rna ? GO:0000028 ... Q99207 32943522
    505927 6lqu:RN (3.7) BS02 rna ? GO:0000028 ... Q99207 32943522
    505928 6lqu:RO (3.7) BS01 rna ? GO:0000028 ... Q06512 32943522
    505929 6lqu:RP (3.7) BS01 rna ? GO:0000447 ... P35194 32943522
    505930 6lqu:RP (3.7) BS02 rna ? GO:0000447 ... P35194 32943522
    505931 6lqu:RQ (3.7) BS01 rna ? GO:0000447 ... Q04500 32943522
    505932 6lqu:RQ (3.7) BS02 rna ? GO:0000447 ... Q04500 32943522
    505933 6lqu:RS (3.7) BS01 rna ? GO:0000447 ... P38333 32943522
    505934 6lqu:RT (3.7) BS01 rna N/A GO:0003723 ... N/A 32943522
    505935 6lqu:RV (3.7) BS01 rna ? GO:0000462 ... P40546 32943522
    505936 6lqu:RV (3.7) BS02 rna ? GO:0000462 ... P40546 32943522
    505937 6lqu:RV (3.7) BS03 rna ? GO:0000462 ... P40546 32943522
    505938 6lqu:RW (3.7) BS01 rna ? GO:0003674 ... P40470 32943522
    505939 6lqu:RY (3.7) BS01 rna ? GO:0000462 ... Q06631 32943522
    505940 6lqu:SF (3.7) BS01 rna ? GO:0002181 ... P0CX35 32943522
    505941 6lqu:SG (3.7) BS01 rna ? GO:0000028 ... P26783 32943522
    505942 6lqu:SH (3.7) BS01 rna ? GO:0000462 ... P0CX37 32943522
    505943 6lqu:SJ (3.7) BS01 rna ? GO:0000462 ... P0CX39 32943522
    505944 6lqu:SK (3.7) BS01 rna ? GO:0000462 ... O13516 32943522
    505945 6lqu:SM (3.7) BS01 rna ? GO:0000028 ... P0CX47 32943522
    505946 6lqu:SN (3.7) BS01 rna ? GO:0000028 ... P48589 32943522
    505947 6lqu:SO (3.7) BS01 rna ? GO:0000462 ... P05756 32943522
    505948 6lqu:SP (3.7) BS01 rna ? GO:0000028 ... P06367 32943522
    505949 6lqu:SR (3.7) BS01 rna ? GO:0000462 ... P0CX51 32943522
    505950 6lqu:SR (3.7) BS02 rna ? GO:0000462 ... P0CX51 32943522
    505951 6lqu:ST (3.7) BS01 rna ? GO:0000054 ... P0CX55 32943522
    505952 6lqu:SY (3.7) BS01 rna ? GO:0000462 ... P0CX29 32943522
    505953 6lqu:SZ (3.7) BS01 rna ? GO:0000462 ... P0CX31 32943522
    505954 6lqu:Sd (3.7) BS01 rna ? GO:0000028 ... Q3E7X9 32943522
    505955 6lqv:3C (4.8) BS01 rna 2.1.1.- GO:0000451 ... P15646 32943522
    505956 6lqv:3D (4.8) BS01 rna ? GO:0000154 ... Q12460 32943522
    505957 6lqv:3D (4.8) BS02 rna ? GO:0000154 ... Q12460 32943522
    505958 6lqv:3E (4.8) BS01 rna ? GO:0000447 ... Q12499 32943522
    505959 6lqv:3E (4.8) BS02 rna ? GO:0000447 ... Q12499 32943522
    505960 6lqv:3F (4.8) BS01 rna ? GO:0000447 ... Q06506 32943522
    505961 6lqv:3G (4.8) BS01 rna ? GO:0000245 ... P39990 32943522
    505962 6lqv:3H (4.8) BS01 rna ? GO:0000245 ... P39990 32943522
    505963 6lqv:5C (4.8) BS01 rna ? GO:0000447 ... P40055 32943522
    505964 6lqv:5C (4.8) BS02 rna ? GO:0000447 ... P40055 32943522
    505965 6lqv:5D (4.8) BS01 rna ? GO:0000447 ... P34247 32943522
    505966 6lqv:5D (4.8) BS02 rna ? GO:0000447 ... P34247 32943522
    505967 6lqv:5E (4.8) BS01 rna ? GO:0000447 ... P47083 32943522
    505968 6lqv:5F (4.8) BS01 rna ? GO:0003723 ... P32899 32943522
    505969 6lqv:5G (4.8) BS01 rna ? GO:0005515 ... P53941 32943522
    505970 6lqv:5H (4.8) BS01 rna ? GO:0000447 ... Q12136 32943522
    505971 6lqv:5I (4.8) BS01 rna ? GO:0000462 ... P33750 32943522
    505972 6lqv:5I (4.8) BS02 rna ? GO:0000462 ... P33750 32943522
    505973 6lqv:5I (4.8) BS03 rna ? GO:0000462 ... P33750 32943522
    505974 6lqv:5J (4.8) BS01 rna ? GO:0000447 ... Q12035 32943522
    505975 6lqv:5J (4.8) BS02 rna ? GO:0000447 ... Q12035 32943522
    505976 6lqv:5K (4.8) BS01 rna ? GO:0000447 ... Q05498 32943522
    505977 6lqv:5K (4.8) BS02 rna ? GO:0000447 ... Q05498 32943522
    505978 6lqv:5K (4.8) BS03 ZN ? GO:0000447 ... Q05498 32943522
    505979 6lqv:A4 (4.8) BS01 rna ? GO:0000462 ... Q06679 32943522
    505980 6lqv:A9 (4.8) BS01 rna ? GO:0000049 ... P38882 32943522
    505981 6lqv:AE (4.8) BS01 rna ? GO:0000447 ... P42945 32943522
    505982 6lqv:AE (4.8) BS02 rna ? GO:0000447 ... P42945 32943522
    505983 6lqv:AF (4.8) BS01 rna ? GO:0000462 ... Q04305 32943522
    505984 6lqv:AF (4.8) BS02 rna ? GO:0000462 ... Q04305 32943522
    505985 6lqv:AG (4.8) BS01 rna ? GO:0000462 ... Q02931 32943522
    505986 6lqv:AG (4.8) BS02 rna ? GO:0000462 ... Q02931 32943522
    505987 6lqv:B1 (4.8) BS01 rna ? GO:0000028 ... P25635 32943522
    505988 6lqv:B1 (4.8) BS02 rna ? GO:0000028 ... P25635 32943522
    505989 6lqv:B1 (4.8) BS03 rna ? GO:0000028 ... P25635 32943522
    505990 6lqv:B1 (4.8) BS04 peptide ? GO:0000028 ... P25635 32943522
    505991 6lqv:B2 (4.8) BS01 rna ? GO:0000447 ... Q12220 32943522
    505992 6lqv:B3 (4.8) BS01 rna ? GO:0000447 ... Q05946 32943522
    505993 6lqv:B6 (4.8) BS01 rna ? GO:0000447 ... Q02354 32943522
    505994 6lqv:B8 (4.8) BS01 rna ? GO:0000292 ... P40362 32943522
    505995 6lqv:B8 (4.8) BS02 rna ? GO:0000292 ... P40362 32943522
    505996 6lqv:BE (4.8) BS01 rna ? GO:0003674 ... Q06078 32943522
    505997 6lqv:BE (4.8) BS02 rna ? GO:0003674 ... Q06078 32943522
    505998 6lqv:RA (4.8) BS01 rna ? GO:0000462 ... P48234 32943522
    505999 6lqv:RB (4.8) BS01 rna ? GO:0000447 ... P40079 32943522
    506000 6lqv:RG (4.8) BS01 rna 2.1.1.260 GO:0000447 ... Q06287 32943522

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).