SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    506401 6ltm:B (1.65) BS01 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 32329228
    506402 6ltm:B (1.65) BS02 HEM 1.11.1.-
    1.7.-.-
    GO:0004601 ... P68082 32329228
    506403 6ltp:A (3.4) BS01 rna N/A N/A N/A 33067443
    506404 6ltp:G (3.4) BS01 rna N/A N/A N/A 33067443
    506405 6ltr:A (2.51) BS01 rna N/A N/A N/A 33067443
    506406 6ltr:A (2.51) BS02 dna N/A N/A N/A 33067443
    506407 6ltr:A (2.51) BS03 dna N/A N/A N/A 33067443
    506408 6ltr:A (2.51) BS04 dna N/A N/A N/A 33067443
    506409 6ltr:A (2.51) BS05 MG N/A N/A N/A 33067443
    506410 6lts:B (3.45) BS01 MG 2.7.7.6 GO:0000428 ... Q5SHR6 32127479
    506411 6lts:C (3.45) BS01 dna 2.7.7.6 GO:0000428 ... Q8RQE9 32127479
    506412 6lts:D (3.45) BS01 dna 2.7.7.6 GO:0000287 ... Q8RQE8 32127479
    506413 6lts:D (3.45) BS02 dna 2.7.7.6 GO:0000287 ... Q8RQE8 32127479
    506414 6lts:D (3.45) BS03 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 32127479
    506415 6lts:D (3.45) BS04 ZN 2.7.7.6 GO:0000287 ... Q8RQE8 32127479
    506416 6lts:D (3.45) BS05 MG 2.7.7.6 GO:0000287 ... Q8RQE8 32127479
    506417 6lts:D (3.45) BS06 MG 2.7.7.6 GO:0000287 ... Q8RQE8 32127479
    506418 6lts:F (3.45) BS01 dna ? GO:0003677 ... Q5SKW1 32127479
    506419 6lts:F (3.45) BS02 MG ? GO:0003677 ... Q5SKW1 32127479
    506420 6ltu:A (2.57) BS01 rna N/A N/A N/A 33067443
    506421 6ltu:A (2.57) BS02 dna N/A N/A N/A 33067443
    506422 6ltu:A (2.57) BS03 dna N/A N/A N/A 33067443
    506423 6ltu:A (2.57) BS04 dna N/A N/A N/A 33067443
    506424 6ltu:A (2.57) BS05 MG N/A N/A N/A 33067443
    506425 6ltu:A (2.57) BS06 MG N/A N/A N/A 33067443
    506426 6ltv:A (1.87) BS01 3PO 2.5.1.6 GO:0004478 ... A0A0S4TKQ5 33017502
    506427 6ltv:A (1.87) BS02 EU9 2.5.1.6 GO:0004478 ... A0A0S4TKQ5 33017502
    506428 6ltv:A (1.87) BS03 3PO 2.5.1.6 GO:0004478 ... A0A0S4TKQ5 33017502
    506429 6ltv:A (1.87) BS04 EU9 2.5.1.6 GO:0004478 ... A0A0S4TKQ5 33017502
    506430 6ltv:B (1.87) BS01 3PO 2.5.1.6 GO:0004478 ... A0A0S4TKQ5 33017502
    506431 6ltv:B (1.87) BS02 EU9 2.5.1.6 GO:0004478 ... A0A0S4TKQ5 33017502
    506432 6ltv:B (1.87) BS03 3PO 2.5.1.6 GO:0004478 ... A0A0S4TKQ5 33017502
    506433 6ltv:B (1.87) BS04 EU9 2.5.1.6 GO:0004478 ... A0A0S4TKQ5 33017502
    506434 6lty:A (3.28) BS01 dna ? GO:0003677 ... O53333 32695421
    506435 6lty:A (3.28) BS02 dna ? GO:0003677 ... O53333 32695421
    506436 6lty:B (3.28) BS01 dna ? GO:0003677 ... O53333 32695421
    506437 6lty:B (3.28) BS02 dna ? GO:0003677 ... O53333 32695421
    506438 6lu0:A (3.22) BS01 rna N/A N/A N/A 33067443
    506439 6lu0:A (3.22) BS02 dna N/A N/A N/A 33067443
    506440 6lu0:A (3.22) BS03 dna N/A N/A N/A 33067443
    506441 6lu1:A (3.2) BS01 peptide 1.97.1.12 GO:0000287 ... P0A405 33686186
    506442 6lu1:A (3.2) BS02 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506443 6lu1:A (3.2) BS03 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506444 6lu1:A (3.2) BS04 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506445 6lu1:A (3.2) BS05 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506446 6lu1:A (3.2) BS06 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506447 6lu1:A (3.2) BS07 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506448 6lu1:A (3.2) BS08 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506449 6lu1:A (3.2) BS09 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506450 6lu1:A (3.2) BS10 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506451 6lu1:A (3.2) BS11 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506452 6lu1:A (3.2) BS12 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506453 6lu1:A (3.2) BS13 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506454 6lu1:A (3.2) BS14 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506455 6lu1:A (3.2) BS15 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506456 6lu1:A (3.2) BS16 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506457 6lu1:A (3.2) BS17 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506458 6lu1:A (3.2) BS18 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506459 6lu1:A (3.2) BS19 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506460 6lu1:A (3.2) BS20 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506461 6lu1:A (3.2) BS21 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506462 6lu1:A (3.2) BS22 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506463 6lu1:A (3.2) BS23 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506464 6lu1:A (3.2) BS24 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506465 6lu1:A (3.2) BS25 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506466 6lu1:A (3.2) BS26 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506467 6lu1:A (3.2) BS27 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506468 6lu1:A (3.2) BS28 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506469 6lu1:A (3.2) BS29 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506470 6lu1:A (3.2) BS30 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506471 6lu1:A (3.2) BS31 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506472 6lu1:A (3.2) BS32 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506473 6lu1:A (3.2) BS33 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506474 6lu1:A (3.2) BS34 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506475 6lu1:A (3.2) BS35 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506476 6lu1:A (3.2) BS36 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506477 6lu1:A (3.2) BS37 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506478 6lu1:A (3.2) BS38 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506479 6lu1:A (3.2) BS39 PQN 1.97.1.12 GO:0000287 ... P0A405 33686186
    506480 6lu1:A (3.2) BS40 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506481 6lu1:A (3.2) BS41 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506482 6lu1:A (3.2) BS42 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506483 6lu1:A (3.2) BS43 CLA 1.97.1.12 GO:0000287 ... P0A405 33686186
    506484 6lu1:A (3.2) BS44 SF4 1.97.1.12 GO:0000287 ... P0A405 33686186
    506485 6lu1:B (3.2) BS01 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506486 6lu1:B (3.2) BS02 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506487 6lu1:B (3.2) BS03 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506488 6lu1:B (3.2) BS04 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506489 6lu1:B (3.2) BS05 SF4 1.97.1.12 GO:0000287 ... P0A407 33686186
    506490 6lu1:B (3.2) BS06 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506491 6lu1:B (3.2) BS07 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506492 6lu1:B (3.2) BS08 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506493 6lu1:B (3.2) BS09 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506494 6lu1:B (3.2) BS10 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506495 6lu1:B (3.2) BS11 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506496 6lu1:B (3.2) BS12 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506497 6lu1:B (3.2) BS13 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506498 6lu1:B (3.2) BS14 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506499 6lu1:B (3.2) BS15 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506500 6lu1:B (3.2) BS16 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506501 6lu1:B (3.2) BS17 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506502 6lu1:B (3.2) BS18 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506503 6lu1:B (3.2) BS19 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506504 6lu1:B (3.2) BS20 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506505 6lu1:B (3.2) BS21 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506506 6lu1:B (3.2) BS22 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506507 6lu1:B (3.2) BS23 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506508 6lu1:B (3.2) BS24 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506509 6lu1:B (3.2) BS25 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506510 6lu1:B (3.2) BS26 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506511 6lu1:B (3.2) BS27 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506512 6lu1:B (3.2) BS28 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506513 6lu1:B (3.2) BS29 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506514 6lu1:B (3.2) BS30 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506515 6lu1:B (3.2) BS31 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506516 6lu1:B (3.2) BS32 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506517 6lu1:B (3.2) BS33 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506518 6lu1:B (3.2) BS34 CLA 1.97.1.12 GO:0000287 ... P0A407 33686186
    506519 6lu1:B (3.2) BS35 PQN 1.97.1.12 GO:0000287 ... P0A407 33686186
    506520 6lu1:C (3.2) BS01 SF4 1.97.1.12 GO:0009055 ... P0A415 33686186
    506521 6lu1:C (3.2) BS02 SF4 1.97.1.12 GO:0009055 ... P0A415 33686186
    506522 6lu1:I (3.2) BS01 CLA ? GO:0009522 ... P0A427 33686186
    506523 6lu1:I (3.2) BS02 CLA ? GO:0009522 ... P0A427 33686186
    506524 6lu1:L (3.2) BS01 CLA ? GO:0009522 ... Q8DGB4 33686186
    506525 6lu1:L (3.2) BS02 CLA ? GO:0009522 ... Q8DGB4 33686186
    506526 6lu1:L (3.2) BS03 CLA ? GO:0009522 ... Q8DGB4 33686186
    506527 6lu1:L (3.2) BS04 CLA ? GO:0009522 ... Q8DGB4 33686186
    506528 6lu1:L (3.2) BS05 CLA ? GO:0009522 ... Q8DGB4 33686186
    506529 6lu1:L (3.2) BS06 CLA ? GO:0009522 ... Q8DGB4 33686186
    506530 6lu1:M (3.2) BS01 CLA ? GO:0009522 ... P0A403 33686186
    506531 6lu3:A (2.2) BS01 HDH N/A GO:0043190 ... N/A 32143826
    506532 6lu4:A (2.8) BS01 36M N/A GO:0043190 ... N/A 32143826
    506533 6lu5:A (1.86528) BS01 EUO ? GO:0006357 ... Q12830 N/A
    506534 6lu6:A (1.97006) BS01 EUU ? GO:0006357 ... Q12830 N/A
    506535 6lu7:A (2.16) BS01 peptide 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 32272481
    506536 6lu8:3 (3.13) BS01 rna ? GO:0000055 ... Q96D46 32669547
    506537 6lu8:4 (3.13) BS01 peptide ? GO:0000079 ... Q9BZE4 32669547
    506538 6lu8:4 (3.13) BS02 rna ? GO:0000079 ... Q9BZE4 32669547
    506539 6lu8:4 (3.13) BS03 rna ? GO:0000079 ... Q9BZE4 32669547
    506540 6lu8:6 (3.13) BS01 rna ? GO:0000054 ... P56537 32669547
    506541 6lu8:7 (3.13) BS01 rna ? GO:0003735 ... Q9UHA3 32669547
    506542 6lu8:9 (3.13) BS01 rna ? GO:0003676 ... O00488 32669547
    506543 6lu8:B (3.13) BS01 rna ? GO:0002181 ... P39023 32669547
    506544 6lu8:C (3.13) BS01 rna ? GO:0002181 ... P47914 32669547
    506545 6lu8:D (3.13) BS01 rna ? GO:0002181 ... P36578 32669547
    506546 6lu8:D (3.13) BS02 rna ? GO:0002181 ... P36578 32669547
    506547 6lu8:E (3.13) BS01 rna ? GO:0002181 ... P62888 32669547
    506548 6lu8:F (3.13) BS01 rna ? GO:0002181 ... P49207 32669547
    506549 6lu8:F (3.13) BS02 MG ? GO:0002181 ... P49207 32669547
    506550 6lu8:G (3.13) BS01 rna ? GO:0000470 ... P62424 32669547
    506551 6lu8:G (3.13) BS02 rna ? GO:0000470 ... P62424 32669547
    506552 6lu8:H (3.13) BS01 rna ? GO:0000463 ... P42766 32669547
    506553 6lu8:H (3.13) BS02 rna ? GO:0000463 ... P42766 32669547
    506554 6lu8:I (3.13) BS01 rna ? GO:0002181 ... P32969 32669547
    506555 6lu8:K (3.13) BS01 rna ? GO:0002181 ... Q9Y3U8 32669547
    506556 6lu8:L (3.13) BS01 rna ? GO:0002181 ... P46776 32669547
    506557 6lu8:M (3.13) BS01 rna ? GO:0002181 ... P61927 32669547
    506558 6lu8:M (3.13) BS02 rna ? GO:0002181 ... P61927 32669547
    506559 6lu8:N (3.13) BS01 rna ? GO:0000027 ... P62913 32669547
    506560 6lu8:N (3.13) BS02 rna ? GO:0000027 ... P62913 32669547
    506561 6lu8:O (3.13) BS01 rna ? GO:0001501 ... P63173 32669547
    506562 6lu8:P (3.13) BS01 rna ? GO:0002181 ... P62891 32669547
    506563 6lu8:P (3.13) BS02 rna ? GO:0002181 ... P62891 32669547
    506564 6lu8:Q (3.13) BS01 rna ? GO:0001824 ... P26373 32669547
    506565 6lu8:Q (3.13) BS02 rna ? GO:0001824 ... P26373 32669547
    506566 6lu8:R (3.13) BS01 rna ? GO:0005515 ... Q96EY4 32669547
    506567 6lu8:R (3.13) BS02 rna ? GO:0005515 ... Q96EY4 32669547
    506568 6lu8:S (3.13) BS01 rna ? GO:0002181 ... P50914 32669547
    506569 6lu8:U (3.13) BS01 rna ? GO:0002181 ... P61313 32669547
    506570 6lu8:U (3.13) BS02 rna ? GO:0002181 ... P61313 32669547
    506571 6lu8:V (3.13) BS01 rna ? GO:0002181 ... P40429 32669547
    506572 6lu8:W (3.13) BS01 rna ? GO:0002181 ... P83881 32669547
    506573 6lu8:X (3.13) BS01 rna ? GO:0002181 ... P61513 32669547
    506574 6lu8:Y (3.13) BS01 rna ? GO:0002181 ... P18621 32669547
    506575 6lu8:Y (3.13) BS02 rna ? GO:0002181 ... P18621 32669547
    506576 6lu8:Z (3.13) BS01 rna ? GO:0002181 ... Q07020 32669547
    506577 6lu8:a (3.13) BS01 rna ? GO:0002181 ... P84098 32669547
    506578 6lu8:b (3.13) BS01 rna ? GO:0002181 ... Q02543 32669547
    506579 6lu8:b (3.13) BS02 rna ? GO:0002181 ... Q02543 32669547
    506580 6lu8:c (3.13) BS01 rna ? GO:0002181 ... P46778 32669547
    506581 6lu8:d (3.13) BS01 rna ? GO:0002181 ... P35268 32669547
    506582 6lu8:e (3.13) BS01 rna ? GO:0000122 ... P62829 32669547
    506583 6lu8:e (3.13) BS02 MG ? GO:0000122 ... P62829 32669547
    506584 6lu8:g (3.13) BS01 rna ? GO:0002181 ... P62750 32669547
    506585 6lu8:g (3.13) BS02 rna ? GO:0002181 ... P62750 32669547
    506586 6lu8:h (3.13) BS01 rna ? GO:0002181 ... P61254 32669547
    506587 6lu8:h (3.13) BS02 rna ? GO:0002181 ... P61254 32669547
    506588 6lu8:i (3.13) BS01 rna ? GO:0002181 ... P61353 32669547
    506589 6lu8:j (3.13) BS01 rna ? GO:0002181 ... P62899 32669547
    506590 6lu8:k (3.13) BS01 rna ? GO:0002181 ... P62910 32669547
    506591 6lu8:k (3.13) BS02 MG ? GO:0002181 ... P62910 32669547
    506592 6lu8:l (3.13) BS01 rna ? GO:0002181 ... P46779 32669547
    506593 6lu8:m (3.13) BS01 rna ? GO:0002181 ... P62917 32669547
    506594 6lu8:m (3.13) BS02 MG ? GO:0002181 ... P62917 32669547
    506595 6lu8:n (3.13) BS01 rna ? GO:0000049 ... P18077 32669547
    506596 6lu8:n (3.13) BS02 MG ? GO:0000049 ... P18077 32669547
    506597 6lu8:o (3.13) BS01 rna ? GO:0002181 ... Q02878 32669547
    506598 6lu8:p (3.13) BS01 rna ? GO:0000463 ... P18124 32669547
    506599 6lu8:p (3.13) BS02 rna ? GO:0000463 ... P18124 32669547
    506600 6lu8:r (3.13) BS01 rna ? GO:0000027 ... P46777 32669547

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).