SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    510201 6ms8:E (1.9) BS01 NAR 5.5.1.6 GO:0009813 ... B7FJK3 N/A
    510202 6ms8:F (1.9) BS01 NAR 5.5.1.6 GO:0009813 ... B7FJK3 N/A
    510203 6ms8:G (1.9) BS01 NAR 5.5.1.6 GO:0009813 ... B7FJK3 N/A
    510204 6ms9:A (1.49) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 32187889
    510205 6ms9:B (1.49) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 32187889
    510206 6ms9:C (1.49) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 32187889
    510207 6msa:A (2.06) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 30587449
    510208 6msa:A (2.06) BS02 JY4 3.1.4.17 GO:0004114 ... Q9Y233 30587449 MOAD: ic50=5nM
    510209 6msa:B (2.06) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 30587449
    510210 6msb:A (3.0) BS01 ATP ? GO:0000502 ... P35998 30479383
    510211 6msb:B (3.0) BS01 ATP ? GO:0000502 ... P62191 30479383
    510212 6msb:B (3.0) BS02 ATP ? GO:0000502 ... P62191 30479383
    510213 6msb:C (3.0) BS01 ADP ? GO:0000502 ... P62195 30479383
    510214 6msb:D (3.0) BS01 ATP ? GO:0000502 ... P43686 30479383
    510215 6msb:E (3.0) BS01 ATP ? GO:0000502 ... P62333 30479383
    510216 6msb:E (3.0) BS02 ATP ? GO:0000502 ... P62333 30479383
    510217 6msb:F (3.0) BS01 ATP ? GO:0000502 ... P17980 30479383
    510218 6msb:F (3.0) BS02 ADP ? GO:0000502 ... P17980 30479383
    510219 6msb:c (3.0) BS01 ZN 3.4.19.- GO:0000502 ... O00487 30479383
    510220 6msc:A (2.36) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 30587449
    510221 6msc:A (2.36) BS02 JY7 3.1.4.17 GO:0004114 ... Q9Y233 30587449 MOAD: ic50=21nM
    BindingDB: IC50=21nM
    510222 6msc:B (2.36) BS01 ZN 3.1.4.17 GO:0004114 ... Q9Y233 30587449
    510223 6msc:B (2.36) BS02 JY7 3.1.4.17 GO:0004114 ... Q9Y233 30587449 MOAD: ic50=21nM
    BindingDB: IC50=21nM
    510224 6msd:A (3.2) BS01 ATP ? GO:0000502 ... P35998 30479383
    510225 6msd:B (3.2) BS01 ATP ? GO:0000502 ... P62191 30479383
    510226 6msd:B (3.2) BS02 ATP ? GO:0000502 ... P62191 30479383
    510227 6msd:C (3.2) BS01 ADP ? GO:0000502 ... P62195 30479383
    510228 6msd:D (3.2) BS01 ATP ? GO:0000502 ... P43686 30479383
    510229 6msd:E (3.2) BS01 ATP ? GO:0000502 ... P62333 30479383
    510230 6msd:E (3.2) BS02 ATP ? GO:0000502 ... P62333 30479383
    510231 6msd:F (3.2) BS01 ATP ? GO:0000502 ... P17980 30479383
    510232 6msd:F (3.2) BS02 ADP ? GO:0000502 ... P17980 30479383
    510233 6msd:c (3.2) BS01 ZN 3.4.19.- GO:0000502 ... O00487 30479383
    510234 6mse:A (3.3) BS01 peptide ? GO:0000502 ... P35998 30479383
    510235 6mse:A (3.3) BS02 ATP ? GO:0000502 ... P35998 30479383
    510236 6mse:B (3.3) BS01 peptide ? GO:0000502 ... P62191 30479383
    510237 6mse:B (3.3) BS02 ADP ? GO:0000502 ... P62191 30479383
    510238 6mse:D (3.3) BS01 peptide ? GO:0000502 ... P43686 30479383
    510239 6mse:D (3.3) BS02 ATP ? GO:0000502 ... P43686 30479383
    510240 6mse:E (3.3) BS01 peptide ? GO:0000502 ... P62333 30479383
    510241 6mse:E (3.3) BS02 ATP ? GO:0000502 ... P62333 30479383
    510242 6mse:E (3.3) BS03 ADP ? GO:0000502 ... P62333 30479383
    510243 6mse:F (3.3) BS01 peptide ? GO:0000502 ... P17980 30479383
    510244 6mse:F (3.3) BS02 ATP ? GO:0000502 ... P17980 30479383
    510245 6mse:c (3.3) BS01 ZN 3.4.19.- GO:0000502 ... O00487 30479383
    510246 6msf:A (2.8) BS01 rna ? GO:0003723 ... P03612 9461079
    510247 6msf:C (2.8) BS01 rna ? GO:0003723 ... P03612 9461079
    510248 6msg:A (3.5) BS01 peptide ? GO:0000502 ... P35998 30479383
    510249 6msg:A (3.5) BS02 ADP ? GO:0000502 ... P35998 30479383
    510250 6msg:C (3.5) BS01 peptide ? GO:0000502 ... P62195 30479383
    510251 6msg:C (3.5) BS02 ATP ? GO:0000502 ... P62195 30479383
    510252 6msg:D (3.5) BS01 ATP ? GO:0000502 ... P43686 30479383
    510253 6msg:E (3.5) BS01 peptide ? GO:0000502 ... P62333 30479383
    510254 6msg:E (3.5) BS02 ATP ? GO:0000502 ... P62333 30479383
    510255 6msg:E (3.5) BS03 ATP ? GO:0000502 ... P62333 30479383
    510256 6msg:F (3.5) BS01 peptide ? GO:0000502 ... P17980 30479383
    510257 6msg:F (3.5) BS02 ADP ? GO:0000502 ... P17980 30479383
    510258 6msg:c (3.5) BS01 peptide 3.4.19.- GO:0000502 ... O00487 30479383
    510259 6msg:c (3.5) BS02 ZN 3.4.19.- GO:0000502 ... O00487 30479383
    510260 6msh:C (3.6) BS01 ATP ? GO:0000502 ... P62195 30479383
    510261 6msh:D (3.6) BS01 peptide ? GO:0000502 ... P43686 30479383
    510262 6msh:D (3.6) BS02 ATP ? GO:0000502 ... P43686 30479383
    510263 6msh:E (3.6) BS01 peptide ? GO:0000502 ... P62333 30479383
    510264 6msh:E (3.6) BS02 ATP ? GO:0000502 ... P62333 30479383
    510265 6msh:F (3.6) BS01 peptide ? GO:0000502 ... P17980 30479383
    510266 6msh:F (3.6) BS02 ADP ? GO:0000502 ... P17980 30479383
    510267 6msh:c (3.6) BS01 ZN 3.4.19.- GO:0000502 ... O00487 30479383
    510268 6msj:A (3.3) BS01 ATP ? GO:0000502 ... P35998 30479383
    510269 6msj:B (3.3) BS01 ATP ? GO:0000502 ... P62191 30479383
    510270 6msj:C (3.3) BS01 ATP ? GO:0000502 ... P62195 30479383
    510271 6msj:D (3.3) BS01 ATP ? GO:0000502 ... P43686 30479383
    510272 6msj:D (3.3) BS02 ATP ? GO:0000502 ... P43686 30479383
    510273 6msj:E (3.3) BS01 ATP ? GO:0000502 ... P62333 30479383
    510274 6msj:E (3.3) BS02 ADP ? GO:0000502 ... P62333 30479383
    510275 6msj:c (3.3) BS01 ZN 3.4.19.- GO:0000502 ... O00487 30479383
    510276 6msk:A (3.2) BS01 ATP ? GO:0000502 ... P35998 30479383
    510277 6msk:B (3.2) BS01 ATP ? GO:0000502 ... P62191 30479383
    510278 6msk:C (3.2) BS01 ATP ? GO:0000502 ... P62195 30479383
    510279 6msk:C (3.2) BS02 ATP ? GO:0000502 ... P62195 30479383
    510280 6msk:D (3.2) BS01 ATP ? GO:0000502 ... P43686 30479383
    510281 6msk:D (3.2) BS02 ADP ? GO:0000502 ... P43686 30479383
    510282 6msk:F (3.2) BS01 ATP ? GO:0000502 ... P17980 30479383
    510283 6msk:c (3.2) BS01 ZN 3.4.19.- GO:0000502 ... O00487 30479383
    510284 6msl:A (3.104) BS01 MN ? GO:0001525 ... P06756 31353240
    510285 6msl:A (3.104) BS02 MN ? GO:0001525 ... P06756 31353240
    510286 6msl:A (3.104) BS03 MN ? GO:0001525 ... P06756 31353240
    510287 6msl:A (3.104) BS04 MN ? GO:0001525 ... P06756 31353240
    510288 6msl:A (3.104) BS05 MN ? GO:0001525 ... P06756 31353240
    510289 6msl:B (3.104) BS01 MN ? GO:0001618 ... P05106 31353240
    510290 6msl:B (3.104) BS02 MN ? GO:0001618 ... P05106 31353240
    510291 6msl:B (3.104) BS03 MN ? GO:0001618 ... P05106 31353240
    510292 6msm:A (3.2) BS01 peptide 5.6.1.6 GO:0005254 ... P13569 30459277
    510293 6msm:A (3.2) BS02 MG 5.6.1.6 GO:0005254 ... P13569 30459277
    510294 6msm:A (3.2) BS03 MG 5.6.1.6 GO:0005254 ... P13569 30459277
    510295 6msm:A (3.2) BS04 ATP 5.6.1.6 GO:0005254 ... P13569 30459277
    510296 6msm:A (3.2) BS05 ATP 5.6.1.6 GO:0005254 ... P13569 30459277
    510297 6msm:A (3.2) BS06 CLR 5.6.1.6 GO:0005254 ... P13569 30459277
    510298 6msn:A (1.591) BS01 SF4 4.2.1.2 GO:0004333 ... E9AE57 30645090
    510299 6msn:A (1.591) BS02 JYD 4.2.1.2 GO:0004333 ... E9AE57 30645090 MOAD: Ki=8.9uM
    510300 6msn:B (1.591) BS01 SF4 4.2.1.2 GO:0004333 ... E9AE57 30645090
    510301 6msn:B (1.591) BS02 JYD 4.2.1.2 GO:0004333 ... E9AE57 30645090 MOAD: Ki=8.9uM
    510302 6mso:A (2.053) BS01 SF4 4.2.1.2 GO:0003824 ... Q4QAU9 30645090
    510303 6mso:A (2.053) BS02 JYD 4.2.1.2 GO:0003824 ... Q4QAU9 30645090 MOAD: Ki=3uM
    510304 6mso:B (2.053) BS01 SF4 4.2.1.2 GO:0003824 ... Q4QAU9 30645090
    510305 6mso:B (2.053) BS02 JYD 4.2.1.2 GO:0003824 ... Q4QAU9 30645090 MOAD: Ki=3uM
    510306 6mso:C (2.053) BS01 SF4 4.2.1.2 GO:0003824 ... Q4QAU9 30645090
    510307 6mso:C (2.053) BS02 JYD 4.2.1.2 GO:0003824 ... Q4QAU9 30645090 MOAD: Ki=3uM
    510308 6mso:D (2.053) BS01 SF4 4.2.1.2 GO:0003824 ... Q4QAU9 30645090
    510309 6mso:D (2.053) BS02 JYD 4.2.1.2 GO:0003824 ... Q4QAU9 30645090 MOAD: Ki=3uM
    510310 6mss:A (3.0) BS01 SRV N/A N/A N/A 31748533
    510311 6mss:C (3.0) BS01 SRV ? N/A P11609 31748533
    510312 6msu:A (3.11) BS01 MAN ? GO:0001525 ... P06756 31353240
    510313 6msu:A (3.11) BS02 BMA ? GO:0001525 ... P06756 31353240
    510314 6msu:A (3.11) BS03 MN ? GO:0001525 ... P06756 31353240
    510315 6msu:A (3.11) BS04 MN ? GO:0001525 ... P06756 31353240
    510316 6msu:A (3.11) BS05 MN ? GO:0001525 ... P06756 31353240
    510317 6msu:A (3.11) BS06 MN ? GO:0001525 ... P06756 31353240
    510318 6msu:A (3.11) BS07 MN ? GO:0001525 ... P06756 31353240
    510319 6msu:B (3.11) BS01 MN ? GO:0001618 ... P05106 31353240
    510320 6msu:B (3.11) BS02 MN ? GO:0001618 ... P05106 31353240
    510321 6msu:B (3.11) BS03 MN ? GO:0001618 ... P05106 31353240
    510322 6msy:H (1.999) BS01 MAN ? N/A P0DOX5 16174734
    510323 6mt0:A (2.2) BS01 JYG 2.7.11.1 GO:0004672 ... P11309 30624936 BindingDB: IC50=0.050000nM
    510324 6mt3:A (1.21) BS01 peptide ? N/A P01889 30575715
    510325 6mt4:A (1.55) BS01 peptide ? N/A P01889 30575715
    510326 6mt5:A (1.55) BS01 peptide ? N/A P01889 30575715
    510327 6mt6:A (1.31) BS01 peptide ? N/A P01889 30575715
    510328 6mt7:A (1.78) BS01 TRT ? GO:0005549 ... Q06KA2 30926880
    510329 6mt7:B (1.78) BS01 TRT ? GO:0005549 ... Q06KA2 30926880
    510330 6mt8:A (1.35) BS01 THG 1.5.1.3 GO:0004146 ... P0ABQ4 30868089
    510331 6mt8:A (1.35) BS02 DHF 1.5.1.3 GO:0004146 ... P0ABQ4 30868089
    510332 6mt9:A (2.5) BS01 TTP 1.17.4.1 GO:0004748 ... P50620 31201319
    510333 6mt9:A (2.5) BS02 ADP 1.17.4.1 GO:0004748 ... P50620 31201319
    510334 6mt9:A (2.5) BS03 ATP 1.17.4.1 GO:0004748 ... P50620 31201319
    510335 6mta:A (2.15) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 32187889
    510336 6mta:A (2.15) BS02 MG 3.6.5.2 GO:0003924 ... P01116 32187889
    510337 6mta:B (2.15) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 32187889
    510338 6mta:B (2.15) BS02 MG 3.6.5.2 GO:0003924 ... P01116 32187889
    510339 6mta:C (2.15) BS01 GNP 3.6.5.2 GO:0003924 ... P01116 32187889
    510340 6mta:C (2.15) BS02 MG 3.6.5.2 GO:0003924 ... P01116 32187889
    510341 6mtb:A (3.6) BS01 rna ? GO:0002181 ... G1TT27 30355441
    510342 6mtb:A (3.6) BS02 rna ? GO:0002181 ... G1TT27 30355441
    510343 6mtb:A (3.6) BS03 MG ? GO:0002181 ... G1TT27 30355441
    510344 6mtb:AA (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    510345 6mtb:B (3.6) BS01 rna ? GO:0003723 ... G1TL06 30355441
    510346 6mtb:BB (3.6) BS01 rna ? GO:0003735 ... G1SS70 30355441
    510347 6mtb:C (3.6) BS01 rna ? GO:0003735 ... G1SVW5 30355441
    510348 6mtb:C (3.6) BS02 rna ? GO:0003735 ... G1SVW5 30355441
    510349 6mtb:CC (3.6) BS01 rna N/A GO:0003723 ... N/A 30355441
    510350 6mtb:D (3.6) BS01 rna ? GO:0000027 ... P19949 30355441
    510351 6mtb:D (3.6) BS02 rna ? GO:0000027 ... P19949 30355441
    510352 6mtb:DD (3.6) BS01 rna N/A GO:0003723 ... N/A 30355441
    510353 6mtb:E (3.6) BS01 rna ? GO:0000027 ... G1SKF7 30355441
    510354 6mtb:EE (3.6) BS01 rna N/A GO:0003723 ... N/A 30355441
    510355 6mtb:F (3.6) BS01 rna N/A GO:0000463 ... N/A 30355441
    510356 6mtb:F (3.6) BS02 rna N/A GO:0000463 ... N/A 30355441
    510357 6mtb:FF (3.6) BS01 rna ? GO:0003723 ... G1TFM5 30355441
    510358 6mtb:G (3.6) BS01 rna N/A GO:0003723 ... N/A 30355441
    510359 6mtb:G (3.6) BS02 rna N/A GO:0003723 ... N/A 30355441
    510360 6mtb:GG (3.6) BS01 rna ? GO:0003735 ... G1TM55 30355441
    510361 6mtb:H (3.6) BS01 rna ? GO:0002181 ... G1SWI6 30355441
    510362 6mtb:HH (3.6) BS01 rna ? GO:0003735 ... G1SVB0 30355441
    510363 6mtb:I (3.6) BS01 rna ? GO:0003735 ... B7NZQ2 30355441
    510364 6mtb:I (3.6) BS02 rna ? GO:0003735 ... B7NZQ2 30355441
    510365 6mtb:II (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    510366 6mtb:II (3.6) BS02 rna N/A GO:0003735 ... N/A 30355441
    510367 6mtb:J (3.6) BS01 rna ? GO:0003735 ... G1TUB8 30355441
    510368 6mtb:J (3.6) BS02 rna ? GO:0003735 ... G1TUB8 30355441
    510369 6mtb:JJ (3.6) BS01 rna ? GO:0003723 ... B7NZS8 30355441
    510370 6mtb:KK (3.6) BS01 rna ? N/A G1TPV3 30355441
    510371 6mtb:L (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    510372 6mtb:L (3.6) BS02 rna N/A GO:0003735 ... N/A 30355441
    510373 6mtb:LL (3.6) BS01 rna ? GO:0003735 ... G1TRM4 30355441
    510374 6mtb:M (3.6) BS01 rna ? GO:0003723 ... G1SZ12 30355441
    510375 6mtb:MM (3.6) BS01 rna ? GO:0003735 ... G1SFR8 30355441
    510376 6mtb:N (3.6) BS01 rna ? GO:0002181 ... G1T0C1 30355441
    510377 6mtb:N (3.6) BS02 rna ? GO:0002181 ... G1T0C1 30355441
    510378 6mtb:NN (3.6) BS01 rna ? GO:0003735 ... G1SP51 30355441
    510379 6mtb:NN (3.6) BS02 rna ? GO:0003735 ... G1SP51 30355441
    510380 6mtb:O (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    510381 6mtb:OO (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    510382 6mtb:P (3.6) BS01 rna ? GO:0003735 ... G1SCJ6 30355441
    510383 6mtb:P (3.6) BS02 rna ? GO:0003735 ... G1SCJ6 30355441
    510384 6mtb:PP (3.6) BS01 rna ? GO:0003723 ... G1U0Q2 30355441
    510385 6mtb:Q (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    510386 6mtb:QQ (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    510387 6mtb:R (3.6) BS01 rna N/A GO:0003723 ... N/A 30355441
    510388 6mtb:R (3.6) BS02 rna N/A GO:0003723 ... N/A 30355441
    510389 6mtb:RR (3.6) BS01 rna ? GO:0003735 ... G1TU13 30355441
    510390 6mtb:S (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    510391 6mtb:S (3.6) BS02 rna N/A GO:0003735 ... N/A 30355441
    510392 6mtb:SS (3.6) BS01 rna ? GO:0003676 ... G1TPG3 30355441
    510393 6mtb:T (3.6) BS01 rna ? GO:0003735 ... G1SHQ2 30355441
    510394 6mtb:T (3.6) BS02 rna ? GO:0003735 ... G1SHQ2 30355441
    510395 6mtb:TT (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    510396 6mtb:U (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    510397 6mtb:UU (3.6) BS01 rna N/A GO:0003723 ... N/A 30355441
    510398 6mtb:V (3.6) BS01 rna ? GO:0003735 ... G1T6D1 30355441
    510399 6mtb:W (3.6) BS01 rna ? GO:0000027 ... G1SE28 30355441
    510400 6mtb:W (3.6) BS02 rna ? GO:0000027 ... G1SE28 30355441

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).