SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    510401 6mtb:WW (3.6) BS01 rna ? GO:0003735 ... G1TG89 30355441
    510402 6mtb:X (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    510403 6mtb:X (3.6) BS02 rna N/A GO:0003735 ... N/A 30355441
    510404 6mtb:XX (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    510405 6mtb:Y (3.6) BS01 rna ? GO:0003723 ... G1SQH0 30355441
    510406 6mtb:Y (3.6) BS02 rna ? GO:0003723 ... G1SQH0 30355441
    510407 6mtb:YY (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    510408 6mtb:Z (3.6) BS01 rna ? GO:0003735 ... G1TXF6 30355441
    510409 6mtb:ZZ (3.6) BS01 rna ? N/A G1TDB3 30355441
    510410 6mtb:ZZ (3.6) BS02 rna ? N/A G1TDB3 30355441
    510411 6mtb:a (3.6) BS01 rna ? GO:0003735 ... G1SNY0 30355441
    510412 6mtb:aa (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    510413 6mtb:aa (3.6) BS02 ZN N/A GO:0003735 ... N/A 30355441
    510414 6mtb:b (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    510415 6mtb:bb (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    510416 6mtb:c (3.6) BS01 rna ? GO:0003723 ... G1TDL2 30355441
    510417 6mtb:cc (3.6) BS01 rna ? GO:0000028 ... G1TIB4 30355441
    510418 6mtb:d (3.6) BS01 rna ? GO:0003735 ... G1SHG0 30355441
    510419 6mtb:dd (3.6) BS01 rna ? GO:0002181 ... G1U7M4 30355441
    510420 6mtb:dd (3.6) BS02 ZN ? GO:0002181 ... G1U7M4 30355441
    510421 6mtb:e (3.6) BS01 rna ? GO:0003735 ... G1TUN8 30355441
    510422 6mtb:ee (3.6) BS01 rna ? GO:0003735 ... G1T8A2 30355441
    510423 6mtb:f (3.6) BS01 rna ? GO:0000049 ... G1SF08 30355441
    510424 6mtb:ff (3.6) BS01 rna ? GO:0003735 ... G1SK22 30355441
    510425 6mtb:ff (3.6) BS02 ZN ? GO:0003735 ... G1SK22 30355441
    510426 6mtb:g (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    510427 6mtb:g (3.6) BS02 ZN N/A GO:0003735 ... N/A 30355441
    510428 6mtb:gg (3.6) BS01 rna ? GO:0001891 ... G1SJB4 30355441
    510429 6mtb:h (3.6) BS01 rna ? GO:0000463 ... G1SIT5 30355441
    510430 6mtb:h (3.6) BS02 rna ? GO:0000463 ... G1SIT5 30355441
    510431 6mtb:i (3.6) BS01 rna ? GO:0003735 ... G1TTQ5 30355441
    510432 6mtb:j (3.6) BS01 rna ? GO:0003735 ... U3KPD5 30355441
    510433 6mtb:j (3.6) BS02 rna ? GO:0003735 ... U3KPD5 30355441
    510434 6mtb:j (3.6) BS03 ZN ? GO:0003735 ... U3KPD5 30355441
    510435 6mtb:k (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    510436 6mtb:l (3.6) BS01 rna ? GO:0003735 ... G1TTN1 30355441
    510437 6mtb:l (3.6) BS02 rna ? GO:0003735 ... G1TTN1 30355441
    510438 6mtb:m (3.6) BS01 rna N/A GO:0003735 ... N/A 30355441
    510439 6mtb:m (3.6) BS02 ZN N/A GO:0003735 ... N/A 30355441
    510440 6mtb:o (3.6) BS01 rna ? GO:0003735 ... G1T040 30355441
    510441 6mtb:o (3.6) BS02 rna ? GO:0003735 ... G1T040 30355441
    510442 6mtb:o (3.6) BS03 ZN ? GO:0003735 ... G1T040 30355441
    510443 6mtb:p (3.6) BS01 rna ? GO:0003735 ... G1SY53 30355441
    510444 6mtb:p (3.6) BS02 ZN ? GO:0003735 ... G1SY53 30355441
    510445 6mtb:r (3.6) BS01 rna ? GO:0003735 ... G1U7L1 30355441
    510446 6mtb:u (3.6) BS01 rna ? GO:0003723 ... G1SKZ8 30355441
    510447 6mtb:u (3.6) BS02 rna ? GO:0003723 ... G1SKZ8 30355441
    510448 6mtc:A (3.4) BS01 rna ? GO:0002181 ... G1TT27 30355441
    510449 6mtc:A (3.4) BS02 rna ? GO:0002181 ... G1TT27 30355441
    510450 6mtc:AA (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510451 6mtc:B (3.4) BS01 rna ? GO:0003723 ... G1TL06 30355441
    510452 6mtc:BB (3.4) BS01 rna ? GO:0003735 ... G1SS70 30355441
    510453 6mtc:C (3.4) BS01 rna ? GO:0003735 ... G1SVW5 30355441
    510454 6mtc:C (3.4) BS02 rna ? GO:0003735 ... G1SVW5 30355441
    510455 6mtc:CC (3.4) BS01 rna N/A GO:0003723 ... N/A 30355441
    510456 6mtc:D (3.4) BS01 rna ? GO:0000027 ... P19949 30355441
    510457 6mtc:D (3.4) BS02 rna ? GO:0000027 ... P19949 30355441
    510458 6mtc:DD (3.4) BS01 rna N/A GO:0003723 ... N/A 30355441
    510459 6mtc:E (3.4) BS01 rna ? GO:0000027 ... G1SKF7 30355441
    510460 6mtc:EE (3.4) BS01 rna N/A GO:0003723 ... N/A 30355441
    510461 6mtc:F (3.4) BS01 rna ? GO:0000463 ... G1SV32 30355441
    510462 6mtc:F (3.4) BS02 rna ? GO:0000463 ... G1SV32 30355441
    510463 6mtc:FF (3.4) BS01 rna ? GO:0003723 ... G1TFM5 30355441
    510464 6mtc:G (3.4) BS01 rna N/A GO:0003723 ... N/A 30355441
    510465 6mtc:G (3.4) BS02 rna N/A GO:0003723 ... N/A 30355441
    510466 6mtc:GG (3.4) BS01 rna ? GO:0003735 ... G1TM55 30355441
    510467 6mtc:H (3.4) BS01 rna ? GO:0002181 ... G1SWI6 30355441
    510468 6mtc:HH (3.4) BS01 rna ? GO:0003735 ... G1SVB0 30355441
    510469 6mtc:I (3.4) BS01 rna ? GO:0003735 ... B7NZQ2 30355441
    510470 6mtc:I (3.4) BS02 rna ? GO:0003735 ... B7NZQ2 30355441
    510471 6mtc:II (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510472 6mtc:II (3.4) BS02 rna N/A GO:0003735 ... N/A 30355441
    510473 6mtc:J (3.4) BS01 rna ? GO:0003735 ... G1TUB8 30355441
    510474 6mtc:J (3.4) BS02 rna ? GO:0003735 ... G1TUB8 30355441
    510475 6mtc:JJ (3.4) BS01 rna ? GO:0003723 ... B7NZS8 30355441
    510476 6mtc:KK (3.4) BS01 rna ? N/A G1TPV3 30355441
    510477 6mtc:L (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510478 6mtc:L (3.4) BS02 rna N/A GO:0003735 ... N/A 30355441
    510479 6mtc:LL (3.4) BS01 rna ? GO:0003735 ... G1TRM4 30355441
    510480 6mtc:LL (3.4) BS02 MG ? GO:0003735 ... G1TRM4 30355441
    510481 6mtc:M (3.4) BS01 rna ? GO:0003723 ... G1SZ12 30355441
    510482 6mtc:MM (3.4) BS01 rna ? GO:0003735 ... G1SFR8 30355441
    510483 6mtc:N (3.4) BS01 rna ? GO:0002181 ... G1T0C1 30355441
    510484 6mtc:N (3.4) BS02 rna ? GO:0002181 ... G1T0C1 30355441
    510485 6mtc:NN (3.4) BS01 rna ? GO:0003735 ... G1SP51 30355441
    510486 6mtc:NN (3.4) BS02 rna ? GO:0003735 ... G1SP51 30355441
    510487 6mtc:O (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510488 6mtc:OO (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510489 6mtc:P (3.4) BS01 rna ? GO:0003735 ... G1SCJ6 30355441
    510490 6mtc:P (3.4) BS02 rna ? GO:0003735 ... G1SCJ6 30355441
    510491 6mtc:PP (3.4) BS01 rna ? GO:0003723 ... G1U0Q2 30355441
    510492 6mtc:Q (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510493 6mtc:QQ (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510494 6mtc:R (3.4) BS01 rna N/A GO:0003723 ... N/A 30355441
    510495 6mtc:R (3.4) BS02 rna N/A GO:0003723 ... N/A 30355441
    510496 6mtc:RR (3.4) BS01 rna ? GO:0003735 ... G1TU13 30355441
    510497 6mtc:S (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510498 6mtc:S (3.4) BS02 rna N/A GO:0003735 ... N/A 30355441
    510499 6mtc:SS (3.4) BS01 rna ? GO:0003676 ... G1TPG3 30355441
    510500 6mtc:T (3.4) BS01 rna ? GO:0003735 ... G1SHQ2 30355441
    510501 6mtc:T (3.4) BS02 rna ? GO:0003735 ... G1SHQ2 30355441
    510502 6mtc:TT (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510503 6mtc:TT (3.4) BS02 MG N/A GO:0003735 ... N/A 30355441
    510504 6mtc:U (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510505 6mtc:UU (3.4) BS01 rna N/A GO:0003723 ... N/A 30355441
    510506 6mtc:V (3.4) BS01 rna ? GO:0003735 ... G1T6D1 30355441
    510507 6mtc:W (3.4) BS01 rna ? GO:0000027 ... G1SE28 30355441
    510508 6mtc:W (3.4) BS02 rna ? GO:0000027 ... G1SE28 30355441
    510509 6mtc:WW (3.4) BS01 rna ? GO:0003735 ... G1TG89 30355441
    510510 6mtc:X (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510511 6mtc:X (3.4) BS02 rna N/A GO:0003735 ... N/A 30355441
    510512 6mtc:XX (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510513 6mtc:Y (3.4) BS01 rna ? GO:0003723 ... G1SQH0 30355441
    510514 6mtc:Y (3.4) BS02 rna ? GO:0003723 ... G1SQH0 30355441
    510515 6mtc:YY (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510516 6mtc:Z (3.4) BS01 rna ? GO:0003735 ... G1TXF6 30355441
    510517 6mtc:ZZ (3.4) BS01 rna ? N/A G1TDB3 30355441
    510518 6mtc:ZZ (3.4) BS02 rna ? N/A G1TDB3 30355441
    510519 6mtc:a (3.4) BS01 rna ? GO:0003735 ... G1SNY0 30355441
    510520 6mtc:aa (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510521 6mtc:aa (3.4) BS02 ZN N/A GO:0003735 ... N/A 30355441
    510522 6mtc:b (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510523 6mtc:bb (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510524 6mtc:c (3.4) BS01 rna ? GO:0003723 ... G1TDL2 30355441
    510525 6mtc:cc (3.4) BS01 rna ? GO:0000028 ... G1TIB4 30355441
    510526 6mtc:d (3.4) BS01 rna ? GO:0003735 ... G1SHG0 30355441
    510527 6mtc:dd (3.4) BS01 rna ? GO:0002181 ... G1U7M4 30355441
    510528 6mtc:dd (3.4) BS02 ZN ? GO:0002181 ... G1U7M4 30355441
    510529 6mtc:e (3.4) BS01 rna ? GO:0003735 ... G1TUN8 30355441
    510530 6mtc:ee (3.4) BS01 rna ? GO:0003735 ... G1T8A2 30355441
    510531 6mtc:f (3.4) BS01 rna ? GO:0000049 ... G1SF08 30355441
    510532 6mtc:ff (3.4) BS01 rna ? GO:0003735 ... G1SK22 30355441
    510533 6mtc:ff (3.4) BS02 ZN ? GO:0003735 ... G1SK22 30355441
    510534 6mtc:g (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510535 6mtc:g (3.4) BS02 ZN N/A GO:0003735 ... N/A 30355441
    510536 6mtc:gg (3.4) BS01 rna ? GO:0001891 ... G1SJB4 30355441
    510537 6mtc:h (3.4) BS01 rna ? GO:0000463 ... G1SIT5 30355441
    510538 6mtc:h (3.4) BS02 rna ? GO:0000463 ... G1SIT5 30355441
    510539 6mtc:i (3.4) BS01 rna ? GO:0003735 ... G1TTQ5 30355441
    510540 6mtc:j (3.4) BS01 rna ? GO:0003735 ... U3KPD5 30355441
    510541 6mtc:j (3.4) BS02 rna ? GO:0003735 ... U3KPD5 30355441
    510542 6mtc:j (3.4) BS03 ZN ? GO:0003735 ... U3KPD5 30355441
    510543 6mtc:k (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510544 6mtc:l (3.4) BS01 rna ? GO:0003735 ... G1TTN1 30355441
    510545 6mtc:l (3.4) BS02 rna ? GO:0003735 ... G1TTN1 30355441
    510546 6mtc:m (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510547 6mtc:m (3.4) BS02 ZN N/A GO:0003735 ... N/A 30355441
    510548 6mtc:o (3.4) BS01 rna ? GO:0003735 ... G1T040 30355441
    510549 6mtc:o (3.4) BS02 rna ? GO:0003735 ... G1T040 30355441
    510550 6mtc:o (3.4) BS03 ZN ? GO:0003735 ... G1T040 30355441
    510551 6mtc:p (3.4) BS01 rna ? GO:0003735 ... G1SY53 30355441
    510552 6mtc:p (3.4) BS02 ZN ? GO:0003735 ... G1SY53 30355441
    510553 6mtc:r (3.4) BS01 rna ? GO:0003735 ... G1U7L1 30355441
    510554 6mtc:u (3.4) BS01 rna ? GO:0003723 ... G1SKZ8 30355441
    510555 6mtc:u (3.4) BS02 rna ? GO:0003723 ... G1SKZ8 30355441
    510556 6mtc:v (3.4) BS01 rna N/A N/A N/A 30355441
    510557 6mtc:v (3.4) BS02 rna N/A N/A N/A 30355441
    510558 6mtd:A (3.3) BS01 rna ? GO:0002181 ... G1TT27 30355441
    510559 6mtd:A (3.3) BS02 rna ? GO:0002181 ... G1TT27 30355441
    510560 6mtd:AA (3.3) BS01 rna N/A GO:0003735 ... N/A 30355441
    510561 6mtd:B (3.3) BS01 rna ? GO:0003723 ... G1TL06 30355441
    510562 6mtd:BB (3.3) BS01 rna ? GO:0003735 ... G1SS70 30355441
    510563 6mtd:C (3.3) BS01 rna ? GO:0003735 ... G1SVW5 30355441
    510564 6mtd:C (3.3) BS02 rna ? GO:0003735 ... G1SVW5 30355441
    510565 6mtd:CC (3.3) BS01 rna ? GO:0003723 ... O18789 30355441
    510566 6mtd:D (3.3) BS01 rna ? GO:0000027 ... P19949 30355441
    510567 6mtd:D (3.3) BS02 rna ? GO:0000027 ... P19949 30355441
    510568 6mtd:DD (3.3) BS01 rna 4.2.99.18 GO:0000977 ... E2RH47 30355441
    510569 6mtd:DD (3.3) BS02 MG 4.2.99.18 GO:0000977 ... E2RH47 30355441
    510570 6mtd:DD (3.3) BS03 MG 4.2.99.18 GO:0000977 ... E2RH47 30355441
    510571 6mtd:E (3.3) BS01 rna ? GO:0000027 ... G1SKF7 30355441
    510572 6mtd:EE (3.3) BS01 rna ? GO:0003723 ... Q76N24 30355441
    510573 6mtd:F (3.3) BS01 rna ? GO:0000463 ... G1SV32 30355441
    510574 6mtd:F (3.3) BS02 rna ? GO:0000463 ... G1SV32 30355441
    510575 6mtd:FF (3.3) BS01 rna ? GO:0003723 ... G1TFM5 30355441
    510576 6mtd:G (3.3) BS01 rna N/A GO:0003723 ... N/A 30355441
    510577 6mtd:G (3.3) BS02 rna N/A GO:0003723 ... N/A 30355441
    510578 6mtd:GG (3.3) BS01 rna ? GO:0003735 ... G1TM55 30355441
    510579 6mtd:H (3.3) BS01 rna ? GO:0002181 ... G1SWI6 30355441
    510580 6mtd:HH (3.3) BS01 rna ? GO:0003735 ... G1SVB0 30355441
    510581 6mtd:I (3.3) BS01 rna ? GO:0003735 ... B7NZQ2 30355441
    510582 6mtd:I (3.3) BS02 rna ? GO:0003735 ... B7NZQ2 30355441
    510583 6mtd:II (3.3) BS01 rna ? GO:0000462 ... Q5E958 30355441
    510584 6mtd:II (3.3) BS02 rna ? GO:0000462 ... Q5E958 30355441
    510585 6mtd:J (3.3) BS01 rna ? GO:0003735 ... G1TUB8 30355441
    510586 6mtd:J (3.3) BS02 rna ? GO:0003735 ... G1TUB8 30355441
    510587 6mtd:JJ (3.3) BS01 rna ? GO:0003723 ... B7NZS8 30355441
    510588 6mtd:KK (3.3) BS01 peptide ? N/A G1TPV3 30355441
    510589 6mtd:KK (3.3) BS02 rna ? N/A G1TPV3 30355441
    510590 6mtd:L (3.3) BS01 rna N/A GO:0003735 ... N/A 30355441
    510591 6mtd:L (3.3) BS02 rna N/A GO:0003735 ... N/A 30355441
    510592 6mtd:LL (3.3) BS01 rna ? GO:0003735 ... G1TRM4 30355441
    510593 6mtd:M (3.3) BS01 rna ? GO:0003723 ... G1SZ12 30355441
    510594 6mtd:MM (3.3) BS01 peptide ? GO:0003735 ... G1SFR8 30355441
    510595 6mtd:MM (3.3) BS02 rna ? GO:0003735 ... G1SFR8 30355441
    510596 6mtd:N (3.3) BS01 rna ? GO:0002181 ... G1T0C1 30355441
    510597 6mtd:N (3.3) BS02 rna ? GO:0002181 ... G1T0C1 30355441
    510598 6mtd:NN (3.3) BS01 rna ? GO:0003735 ... G1SP51 30355441
    510599 6mtd:O (3.3) BS01 rna N/A GO:0003735 ... N/A 30355441
    510600 6mtd:OO (3.3) BS01 rna ? GO:0000028 ... P13471 30355441

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).