SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    510601 6mtd:P (3.3) BS01 rna ? GO:0003735 ... G1SCJ6 30355441
    510602 6mtd:P (3.3) BS02 rna ? GO:0003735 ... G1SCJ6 30355441
    510603 6mtd:PP (3.3) BS01 rna ? GO:0003723 ... G1U0Q2 30355441
    510604 6mtd:Q (3.3) BS01 rna N/A GO:0003735 ... N/A 30355441
    510605 6mtd:QQ (3.3) BS01 rna ? GO:0000462 ... Q3T0X6 30355441
    510606 6mtd:R (3.3) BS01 rna ? GO:0003723 ... Q3T0W9 30355441
    510607 6mtd:R (3.3) BS02 rna ? GO:0003723 ... Q3T0W9 30355441
    510608 6mtd:RR (3.3) BS01 rna ? GO:0003735 ... G1TU13 30355441
    510609 6mtd:S (3.3) BS01 rna ? GO:0003735 ... A0A287APR1 30355441
    510610 6mtd:S (3.3) BS02 rna ? GO:0003735 ... A0A287APR1 30355441
    510611 6mtd:SS (3.3) BS01 rna ? GO:0003676 ... G1TPG3 30355441
    510612 6mtd:T (3.3) BS01 rna ? GO:0003735 ... G1SHQ2 30355441
    510613 6mtd:T (3.3) BS02 rna ? GO:0003735 ... G1SHQ2 30355441
    510614 6mtd:TT (3.3) BS01 rna N/A GO:0003735 ... N/A 30355441
    510615 6mtd:U (3.3) BS01 rna N/A GO:0003735 ... N/A 30355441
    510616 6mtd:UU (3.3) BS01 rna ? GO:0003723 ... Q3ZBH8 30355441
    510617 6mtd:V (3.3) BS01 rna ? GO:0003735 ... G1T6D1 30355441
    510618 6mtd:W (3.3) BS01 rna ? GO:0000027 ... G1SE28 30355441
    510619 6mtd:WW (3.3) BS01 rna ? GO:0003735 ... G1TG89 30355441
    510620 6mtd:X (3.3) BS01 rna ? GO:0003735 ... Q24JY1 30355441
    510621 6mtd:X (3.3) BS02 rna ? GO:0003735 ... Q24JY1 30355441
    510622 6mtd:XX (3.3) BS01 rna ? GO:0002181 ... Q3T199 30355441
    510623 6mtd:Y (3.3) BS01 rna ? GO:0003723 ... G1SQH0 30355441
    510624 6mtd:Y (3.3) BS02 rna ? GO:0003723 ... G1SQH0 30355441
    510625 6mtd:YY (3.3) BS01 rna ? GO:0002181 ... P62847 30355441
    510626 6mtd:Z (3.3) BS01 rna ? GO:0003735 ... G1TXF6 30355441
    510627 6mtd:ZZ (3.3) BS01 rna ? N/A G1TDB3 30355441
    510628 6mtd:a (3.3) BS01 rna ? GO:0003735 ... G1SNY0 30355441
    510629 6mtd:aa (3.3) BS01 rna ? GO:0003735 ... Q56JV1 30355441
    510630 6mtd:aa (3.3) BS02 ZN ? GO:0003735 ... Q56JV1 30355441
    510631 6mtd:b (3.3) BS01 rna N/A GO:0003735 ... N/A 30355441
    510632 6mtd:bb (3.3) BS01 rna ? GO:0000028 ... Q2KHT7 30355441
    510633 6mtd:c (3.3) BS01 rna ? GO:0003723 ... G1TDL2 30355441
    510634 6mtd:cc (3.3) BS01 rna ? GO:0000028 ... G1TIB4 30355441
    510635 6mtd:d (3.3) BS01 rna ? GO:0003735 ... G1SHG0 30355441
    510636 6mtd:dd (3.3) BS01 rna ? GO:0002181 ... G1U7M4 30355441
    510637 6mtd:dd (3.3) BS02 MG ? GO:0002181 ... G1U7M4 30355441
    510638 6mtd:dd (3.3) BS03 ZN ? GO:0002181 ... G1U7M4 30355441
    510639 6mtd:e (3.3) BS01 rna ? GO:0003735 ... G1TUN8 30355441
    510640 6mtd:ee (3.3) BS01 rna ? GO:0003735 ... G1T8A2 30355441
    510641 6mtd:f (3.3) BS01 rna ? GO:0000049 ... G1SF08 30355441
    510642 6mtd:ff (3.3) BS01 rna ? GO:0003735 ... G1SK22 30355441
    510643 6mtd:g (3.3) BS01 rna ? GO:0002181 ... P49207 30355441
    510644 6mtd:g (3.3) BS02 MG ? GO:0002181 ... P49207 30355441
    510645 6mtd:gg (3.3) BS01 rna ? GO:0001891 ... G1SJB4 30355441
    510646 6mtd:h (3.3) BS01 rna ? GO:0000463 ... G1SIT5 30355441
    510647 6mtd:h (3.3) BS02 rna ? GO:0000463 ... G1SIT5 30355441
    510648 6mtd:i (3.3) BS01 rna ? GO:0003735 ... G1TTQ5 30355441
    510649 6mtd:j (3.3) BS01 rna ? GO:0003735 ... U3KPD5 30355441
    510650 6mtd:j (3.3) BS02 rna ? GO:0003735 ... U3KPD5 30355441
    510651 6mtd:j (3.3) BS03 ZN ? GO:0003735 ... U3KPD5 30355441
    510652 6mtd:k (3.3) BS01 rna ? GO:0003735 ... Q32PB9 30355441
    510653 6mtd:l (3.3) BS01 rna ? GO:0003735 ... G1TTN1 30355441
    510654 6mtd:l (3.3) BS02 rna ? GO:0003735 ... G1TTN1 30355441
    510655 6mtd:m (3.3) BS01 rna N/A GO:0003735 ... N/A 30355441
    510656 6mtd:m (3.3) BS02 ZN N/A GO:0003735 ... N/A 30355441
    510657 6mtd:o (3.3) BS01 rna ? GO:0003735 ... G1T040 30355441
    510658 6mtd:o (3.3) BS02 ZN ? GO:0003735 ... G1T040 30355441
    510659 6mtd:p (3.3) BS01 rna ? GO:0003735 ... G1SY53 30355441
    510660 6mtd:p (3.3) BS02 ZN ? GO:0003735 ... G1SY53 30355441
    510661 6mtd:r (3.3) BS01 rna ? GO:0003735 ... G1U7L1 30355441
    510662 6mtd:s (3.3) BS01 rna ? N/A Q29214 30355441
    510663 6mtd:t (3.3) BS01 rna ? GO:0003723 ... G1SMR7 30355441
    510664 6mtd:u (3.3) BS01 rna ? GO:0003723 ... G1SKZ8 30355441
    510665 6mtd:v (3.3) BS01 rna N/A GO:0003924 ... N/A 30355441
    510666 6mtd:v (3.3) BS02 peptide N/A GO:0003924 ... N/A 30355441
    510667 6mtd:v (3.3) BS03 rna N/A GO:0003924 ... N/A 30355441
    510668 6mtd:v (3.3) BS04 GDP N/A GO:0003924 ... N/A 30355441
    510669 6mte:A (3.4) BS01 rna ? GO:0002181 ... G1TT27 30355441
    510670 6mte:A (3.4) BS02 rna ? GO:0002181 ... G1TT27 30355441
    510671 6mte:A (3.4) BS03 MG ? GO:0002181 ... G1TT27 30355441
    510672 6mte:AA (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510673 6mte:B (3.4) BS01 rna ? GO:0003723 ... G1TL06 30355441
    510674 6mte:BB (3.4) BS01 rna ? GO:0003735 ... G1SS70 30355441
    510675 6mte:BB (3.4) BS02 rna ? GO:0003735 ... G1SS70 30355441
    510676 6mte:C (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510677 6mte:C (3.4) BS02 rna N/A GO:0003735 ... N/A 30355441
    510678 6mte:CC (3.4) BS01 rna ? GO:0003723 ... O18789 30355441
    510679 6mte:D (3.4) BS01 rna ? GO:0000027 ... P19949 30355441
    510680 6mte:D (3.4) BS02 rna ? GO:0000027 ... P19949 30355441
    510681 6mte:DD (3.4) BS01 rna 4.2.99.18 GO:0000977 ... E2RH47 30355441
    510682 6mte:E (3.4) BS01 rna ? GO:0000027 ... G1SKF7 30355441
    510683 6mte:EE (3.4) BS01 rna ? GO:0003723 ... Q76N24 30355441
    510684 6mte:F (3.4) BS01 rna ? GO:0000463 ... G1SV32 30355441
    510685 6mte:F (3.4) BS02 rna ? GO:0000463 ... G1SV32 30355441
    510686 6mte:FF (3.4) BS01 rna ? GO:0003723 ... G1TFM5 30355441
    510687 6mte:G (3.4) BS01 rna N/A GO:0003723 ... N/A 30355441
    510688 6mte:G (3.4) BS02 rna N/A GO:0003723 ... N/A 30355441
    510689 6mte:GG (3.4) BS01 rna ? GO:0003735 ... G1TM55 30355441
    510690 6mte:H (3.4) BS01 rna ? GO:0002181 ... G1SWI6 30355441
    510691 6mte:HH (3.4) BS01 rna ? GO:0003735 ... G1SVB0 30355441
    510692 6mte:I (3.4) BS01 rna ? GO:0003735 ... B7NZQ2 30355441
    510693 6mte:I (3.4) BS02 rna ? GO:0003735 ... B7NZQ2 30355441
    510694 6mte:II (3.4) BS01 rna ? GO:0000462 ... Q5E958 30355441
    510695 6mte:J (3.4) BS01 rna ? GO:0003735 ... G1TUB8 30355441
    510696 6mte:J (3.4) BS02 rna ? GO:0003735 ... G1TUB8 30355441
    510697 6mte:JJ (3.4) BS01 rna ? GO:0003723 ... B7NZS8 30355441
    510698 6mte:KK (3.4) BS01 rna ? N/A G1TPV3 30355441
    510699 6mte:L (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510700 6mte:L (3.4) BS02 rna N/A GO:0003735 ... N/A 30355441
    510701 6mte:LL (3.4) BS01 rna ? GO:0003735 ... G1TRM4 30355441
    510702 6mte:M (3.4) BS01 rna ? GO:0003723 ... G1SZ12 30355441
    510703 6mte:MM (3.4) BS01 rna ? GO:0003735 ... G1SFR8 30355441
    510704 6mte:N (3.4) BS01 rna ? GO:0002181 ... G1T0C1 30355441
    510705 6mte:N (3.4) BS02 rna ? GO:0002181 ... G1T0C1 30355441
    510706 6mte:NN (3.4) BS01 rna ? GO:0003735 ... G1SP51 30355441
    510707 6mte:O (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510708 6mte:OO (3.4) BS01 rna ? GO:0000028 ... P13471 30355441
    510709 6mte:P (3.4) BS01 rna ? GO:0003735 ... G1SCJ6 30355441
    510710 6mte:P (3.4) BS02 rna ? GO:0003735 ... G1SCJ6 30355441
    510711 6mte:PP (3.4) BS01 rna ? GO:0003723 ... G1U0Q2 30355441
    510712 6mte:Q (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510713 6mte:QQ (3.4) BS01 rna ? GO:0000462 ... Q3T0X6 30355441
    510714 6mte:R (3.4) BS01 rna ? GO:0003723 ... Q3T0W9 30355441
    510715 6mte:R (3.4) BS02 rna ? GO:0003723 ... Q3T0W9 30355441
    510716 6mte:RR (3.4) BS01 rna ? GO:0003735 ... G1TU13 30355441
    510717 6mte:S (3.4) BS01 rna ? GO:0003735 ... A0A287APR1 30355441
    510718 6mte:S (3.4) BS02 rna ? GO:0003735 ... A0A287APR1 30355441
    510719 6mte:SS (3.4) BS01 rna ? GO:0003676 ... G1TPG3 30355441
    510720 6mte:T (3.4) BS01 rna ? GO:0003735 ... G1SHQ2 30355441
    510721 6mte:T (3.4) BS02 rna ? GO:0003735 ... G1SHQ2 30355441
    510722 6mte:TT (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510723 6mte:TT (3.4) BS02 MG N/A GO:0003735 ... N/A 30355441
    510724 6mte:U (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510725 6mte:UU (3.4) BS01 rna ? GO:0003723 ... Q3ZBH8 30355441
    510726 6mte:V (3.4) BS01 rna ? GO:0003735 ... G1T6D1 30355441
    510727 6mte:W (3.4) BS01 rna ? GO:0000027 ... G1SE28 30355441
    510728 6mte:WW (3.4) BS01 rna ? GO:0003735 ... G1TG89 30355441
    510729 6mte:X (3.4) BS01 rna ? GO:0003735 ... Q24JY1 30355441
    510730 6mte:X (3.4) BS02 rna ? GO:0003735 ... Q24JY1 30355441
    510731 6mte:XX (3.4) BS01 rna ? GO:0002181 ... Q3T199 30355441
    510732 6mte:Y (3.4) BS01 rna ? GO:0003723 ... G1SQH0 30355441
    510733 6mte:Y (3.4) BS02 rna ? GO:0003723 ... G1SQH0 30355441
    510734 6mte:YY (3.4) BS01 rna ? GO:0002181 ... P62847 30355441
    510735 6mte:Z (3.4) BS01 rna ? GO:0003735 ... G1TXF6 30355441
    510736 6mte:ZZ (3.4) BS01 rna ? N/A G1TDB3 30355441
    510737 6mte:a (3.4) BS01 rna ? GO:0003735 ... G1SNY0 30355441
    510738 6mte:aa (3.4) BS01 rna ? GO:0003735 ... Q56JV1 30355441
    510739 6mte:aa (3.4) BS02 ZN ? GO:0003735 ... Q56JV1 30355441
    510740 6mte:b (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510741 6mte:bb (3.4) BS01 rna ? GO:0000028 ... Q2KHT7 30355441
    510742 6mte:c (3.4) BS01 rna ? GO:0003723 ... G1TDL2 30355441
    510743 6mte:c (3.4) BS02 rna ? GO:0003723 ... G1TDL2 30355441
    510744 6mte:cc (3.4) BS01 rna ? GO:0000028 ... G1TIB4 30355441
    510745 6mte:d (3.4) BS01 rna ? GO:0003735 ... G1SHG0 30355441
    510746 6mte:dd (3.4) BS01 rna ? GO:0002181 ... G1U7M4 30355441
    510747 6mte:e (3.4) BS01 rna ? GO:0003735 ... G1TUN8 30355441
    510748 6mte:ee (3.4) BS01 rna ? GO:0003735 ... G1T8A2 30355441
    510749 6mte:f (3.4) BS01 rna ? GO:0000049 ... G1SF08 30355441
    510750 6mte:ff (3.4) BS01 rna ? GO:0003735 ... G1SK22 30355441
    510751 6mte:ff (3.4) BS02 ZN ? GO:0003735 ... G1SK22 30355441
    510752 6mte:g (3.4) BS01 rna ? GO:0002181 ... P49207 30355441
    510753 6mte:g (3.4) BS02 ZN ? GO:0002181 ... P49207 30355441
    510754 6mte:gg (3.4) BS01 rna ? GO:0001891 ... G1SJB4 30355441
    510755 6mte:h (3.4) BS01 rna ? GO:0000463 ... G1SIT5 30355441
    510756 6mte:h (3.4) BS02 rna ? GO:0000463 ... G1SIT5 30355441
    510757 6mte:i (3.4) BS01 rna ? GO:0003735 ... G1TTQ5 30355441
    510758 6mte:j (3.4) BS01 rna ? GO:0003735 ... U3KPD5 30355441
    510759 6mte:j (3.4) BS02 rna ? GO:0003735 ... U3KPD5 30355441
    510760 6mte:j (3.4) BS03 ZN ? GO:0003735 ... U3KPD5 30355441
    510761 6mte:k (3.4) BS01 rna ? GO:0003735 ... Q32PB9 30355441
    510762 6mte:l (3.4) BS01 rna ? GO:0003735 ... G1TTN1 30355441
    510763 6mte:l (3.4) BS02 rna ? GO:0003735 ... G1TTN1 30355441
    510764 6mte:m (3.4) BS01 rna N/A GO:0003735 ... N/A 30355441
    510765 6mte:m (3.4) BS02 ZN N/A GO:0003735 ... N/A 30355441
    510766 6mte:o (3.4) BS01 rna ? GO:0003735 ... G1T040 30355441
    510767 6mte:o (3.4) BS02 ZN ? GO:0003735 ... G1T040 30355441
    510768 6mte:p (3.4) BS01 rna ? GO:0003735 ... G1SY53 30355441
    510769 6mte:p (3.4) BS02 ZN ? GO:0003735 ... G1SY53 30355441
    510770 6mte:r (3.4) BS01 rna ? GO:0003735 ... G1U7L1 30355441
    510771 6mte:s (3.4) BS01 rna ? N/A Q29214 30355441
    510772 6mte:t (3.4) BS01 rna ? GO:0003723 ... G1SMR7 30355441
    510773 6mte:v (3.4) BS01 rna N/A GO:0003924 ... N/A 30355441
    510774 6mte:v (3.4) BS02 rna N/A GO:0003924 ... N/A 30355441
    510775 6mte:v (3.4) BS03 GDP N/A GO:0003924 ... N/A 30355441
    510776 6mte:w (3.4) BS01 rna N/A GO:0003723 ... N/A 30355441
    510777 6mtf:A (1.92) BS01 TRT ? GO:0005549 ... Q06KA2 30926880
    510778 6mtf:B (1.92) BS01 TRT ? GO:0005549 ... Q06KA2 30926880
    510779 6mth:A (1.35) BS01 THG 1.5.1.3 GO:0004146 ... P0ABQ4 30868089
    510780 6mth:A (1.35) BS02 THG 1.5.1.3 GO:0004146 ... P0ABQ4 30868089
    510781 6mth:A (1.35) BS03 DHF 1.5.1.3 GO:0004146 ... P0ABQ4 30868089
    510782 6mti:1 (10.4) BS01 MG ? GO:0016020 ... P21707 31160571
    510783 6mti:2 (10.4) BS01 MG ? GO:0016020 ... P21707 31160571
    510784 6mti:2 (10.4) BS02 MG ? GO:0016020 ... P21707 31160571
    510785 6mti:3 (10.4) BS01 MG ? GO:0016020 ... P21707 31160571
    510786 6mti:3 (10.4) BS02 MG ? GO:0016020 ... P21707 31160571
    510787 6mti:4 (10.4) BS01 MG ? GO:0016020 ... P21707 31160571
    510788 6mti:4 (10.4) BS02 MG ? GO:0016020 ... P21707 31160571
    510789 6mti:5 (10.4) BS01 MG ? GO:0016020 ... P21707 31160571
    510790 6mti:5 (10.4) BS02 MG ? GO:0016020 ... P21707 31160571
    510791 6mti:6 (10.4) BS01 MG ? GO:0016020 ... P21707 31160571
    510792 6mtj:D (2.336) BS01 BMA N/A N/A N/A 30604750
    510793 6mtj:D (2.336) BS02 MAN N/A N/A N/A 30604750
    510794 6mtj:G (2.336) BS01 83G ? GO:0019031 ... Q2N0S6 30604750
    510795 6mtj:H (2.336) BS01 MAN N/A N/A N/A 30604750
    510796 6mtj:L (2.336) BS01 MAN N/A N/A N/A 30604750
    510797 6mtj:L (2.336) BS02 MAN N/A N/A N/A 30604750
    510798 6mtl:A (1.35) BS01 peptide ? N/A P01889 30575715
    510799 6mtm:A (3.0) BS01 peptide ? N/A P01889 30575715
    510800 6mtm:E (3.0) BS01 peptide N/A N/A N/A 30575715

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).