SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    511601 6n1d:BL34 (3.2) BS02 MG ? GO:0003735 ... P80340 30936299
    511602 6n1d:BL35 (3.2) BS01 rna ? GO:0003735 ... Q72L77 30936299
    511603 6n1d:BL36 (3.2) BS01 rna ? GO:0003735 ... Q72I28 30936299
    511604 6n1d:BL36 (3.2) BS02 MG ? GO:0003735 ... Q72I28 30936299
    511605 6n1d:BS02 (3.2) BS01 rna ? GO:0003735 ... P62662 30936299
    511606 6n1d:BS03 (3.2) BS01 rna ? GO:0003676 ... P62663 30936299
    511607 6n1d:BS04 (3.2) BS01 rna ? GO:0003723 ... P62664 30936299
    511608 6n1d:BS04 (3.2) BS02 SF4 ? GO:0003723 ... P62664 30936299
    511609 6n1d:BS05 (3.2) BS01 rna ? GO:0003723 ... P62665 30936299
    511610 6n1d:BS06 (3.2) BS01 rna ? GO:0003735 ... P62666 30936299
    511611 6n1d:BS07 (3.2) BS01 rna ? GO:0000049 ... P62667 30936299
    511612 6n1d:BS08 (3.2) BS01 rna ? GO:0003735 ... P62668 30936299
    511613 6n1d:BS09 (3.2) BS01 rna ? GO:0000049 ... P62669 30936299
    511614 6n1d:BS09 (3.2) BS02 rna ? GO:0000049 ... P62669 30936299
    511615 6n1d:BS10 (3.2) BS01 rna ? GO:0000049 ... P62653 30936299
    511616 6n1d:BS11 (3.2) BS01 rna ? GO:0003735 ... P62654 30936299
    511617 6n1d:BS12 (3.2) BS01 rna ? GO:0000049 ... P61941 30936299
    511618 6n1d:BS13 (3.2) BS01 rna ? GO:0000049 ... P62655 30936299
    511619 6n1d:BS13 (3.2) BS02 peptide ? GO:0000049 ... P62655 30936299
    511620 6n1d:BS14 (3.2) BS01 rna ? GO:0003735 ... P62656 30936299
    511621 6n1d:BS15 (3.2) BS01 rna ? GO:0003735 ... P62657 30936299
    511622 6n1d:BS15 (3.2) BS02 rna ? GO:0003735 ... P62657 30936299
    511623 6n1d:BS16 (3.2) BS01 rna ? GO:0003735 ... P62238 30936299
    511624 6n1d:BS17 (3.2) BS01 rna ? GO:0003735 ... P62658 30936299
    511625 6n1d:BS18 (3.2) BS01 rna ? GO:0003735 ... P62659 30936299
    511626 6n1d:BS19 (3.2) BS01 rna ? GO:0000028 ... P62660 30936299
    511627 6n1d:BS20 (3.2) BS01 rna ? GO:0003723 ... P62661 30936299
    511628 6n1e:A (1.7) BS01 MG N/A GO:0000287 ... N/A 31179410
    511629 6n1e:A (1.7) BS02 QIF N/A GO:0000287 ... N/A 31179410
    511630 6n1f:A (2.05) BS01 FE ? GO:0016491 ... Q3JFV4 N/A
    511631 6n1f:B (2.05) BS01 FE ? GO:0016491 ... Q3JFV4 N/A
    511632 6n1f:C (2.05) BS01 FE ? GO:0016491 ... Q3JFV4 N/A
    511633 6n1f:D (2.05) BS01 FE ? GO:0016491 ... Q3JFV4 N/A
    511634 6n1g:A (3.995) BS01 GOL ? GO:0005515 ... O14520 32695023
    511635 6n1g:B (3.995) BS01 GOL ? GO:0005515 ... O14520 32695023
    511636 6n1g:C (3.995) BS01 GOL ? GO:0005515 ... O14520 32695023
    511637 6n1g:D (3.995) BS01 GOL ? GO:0005515 ... O14520 32695023
    511638 6n1k:A (3.057) BS01 FE 1.14.16.1 GO:0004497 ... P00439 31076506
    511639 6n1k:B (3.057) BS01 FE 1.14.16.1 GO:0004497 ... P00439 31076506
    511640 6n1k:C (3.057) BS01 FE 1.14.16.1 GO:0004497 ... P00439 31076506
    511641 6n1k:D (3.057) BS01 FE 1.14.16.1 GO:0004497 ... P00439 31076506
    511642 6n1o:A (1.55) BS01 HEC ? GO:0002931 ... P62898 31570002
    511643 6n1o:B (1.55) BS01 HEC ? GO:0002931 ... P62898 31570002
    511644 6n1o:B (1.55) BS02 FC6 ? GO:0002931 ... P62898 31570002
    511645 6n1o:B (1.55) BS03 FC6 ? GO:0002931 ... P62898 31570002
    511646 6n1o:C (1.55) BS01 FC6 ? GO:0002931 ... P62898 31570002
    511647 6n1o:C (1.55) BS02 HEC ? GO:0002931 ... P62898 31570002
    511648 6n1o:C (1.55) BS03 FC6 ? GO:0002931 ... P62898 31570002
    511649 6n1o:D (1.55) BS01 HEC ? GO:0002931 ... P62898 31570002
    511650 6n1p:A (6.35) BS01 dna 5.6.2.2 GO:0003677 ... Q8DPM2 30457554
    511651 6n1p:A (6.35) BS02 dna 5.6.2.2 GO:0003677 ... Q8DPM2 30457554
    511652 6n1p:B (6.35) BS01 dna 5.6.2.2 GO:0003677 ... Q8DPM2 30457554
    511653 6n1p:G (6.35) BS01 dna 5.6.2.2 GO:0003677 ... Q8DPM2 30457554
    511654 6n1p:G (6.35) BS02 dna 5.6.2.2 GO:0003677 ... Q8DPM2 30457554
    511655 6n1s:A (3.0) BS01 UMP 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 30624926
    511656 6n1s:A (3.0) BS02 NDP 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 30624926
    511657 6n1s:A (3.0) BS03 K9A 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 30624926 BindingDB: IC50=4.0nM
    511658 6n1s:A (3.0) BS04 UMP 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 30624926
    511659 6n1s:B (3.0) BS01 UMP 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 30624926
    511660 6n1s:B (3.0) BS02 UMP 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 30624926
    511661 6n1s:B (3.0) BS03 NDP 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 30624926
    511662 6n1s:B (3.0) BS04 K9A 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 30624926 BindingDB: IC50=4.0nM
    511663 6n1t:A (3.5) BS01 UMP 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 30624926
    511664 6n1t:A (3.5) BS02 NDP 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 30624926
    511665 6n1t:A (3.5) BS03 BOD 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 30624926 BindingDB: IC50=1.6nM
    511666 6n1t:A (3.5) BS04 UMP 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 30624926
    511667 6n1t:B (3.5) BS01 UMP 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 30624926
    511668 6n1t:B (3.5) BS02 UMP 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 30624926
    511669 6n1t:B (3.5) BS03 NDP 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 30624926
    511670 6n1t:B (3.5) BS04 BOD 1.5.1.3
    2.1.1.45
    GO:0004146 ... Q07422 30624926 BindingDB: IC50=1.6nM
    511671 6n1w:6 (4.2) BS01 MAN N/A N/A N/A 31348886
    511672 6n1w:N (4.2) BS01 MAN N/A N/A N/A 31348886
    511673 6n1w:n (4.2) BS01 MAN N/A N/A N/A 31348886
    511674 6n1x:A (2.35) BS01 UDP N/A GO:0016757 ... N/A 30968475
    511675 6n1y:A (2.15) BS01 FE2 N/A GO:0016702 ... N/A 31138651
    511676 6n1y:B (2.15) BS01 FE2 N/A GO:0016702 ... N/A 31138651
    511677 6n1y:C (2.15) BS01 FE2 N/A GO:0016702 ... N/A 31138651
    511678 6n1y:D (2.15) BS01 FE2 N/A GO:0016702 ... N/A 31138651
    511679 6n20:A (1.95) BS01 FE2 N/A GO:0016702 ... N/A 31138651
    511680 6n20:B (1.95) BS01 FE2 N/A GO:0016702 ... N/A 31138651
    511681 6n20:C (1.95) BS01 FE2 N/A GO:0016702 ... N/A 31138651
    511682 6n20:D (1.95) BS01 FE2 N/A GO:0016702 ... N/A 31138651
    511683 6n21:A (2.04) BS01 FE2 N/A GO:0016702 ... N/A 31138651
    511684 6n21:B (2.04) BS01 FE2 N/A GO:0016702 ... N/A 31138651
    511685 6n21:C (2.04) BS01 FE2 N/A GO:0016702 ... N/A 31138651
    511686 6n21:D (2.04) BS01 FE2 N/A GO:0016702 ... N/A 31138651
    511687 6n22:A (2.4) BS01 CA ? GO:0005509 ... Q99PJ1 32963095
    511688 6n22:A (2.4) BS02 CA ? GO:0005509 ... Q99PJ1 32963095
    511689 6n22:A (2.4) BS03 CA ? GO:0005509 ... Q99PJ1 32963095
    511690 6n23:A (3.1) BS01 CA N/A GO:0005254 ... N/A 30628889
    511691 6n23:B (3.1) BS01 CA N/A GO:0005254 ... N/A 30628889
    511692 6n23:C (3.1) BS01 CA N/A GO:0005254 ... N/A 30628889
    511693 6n23:D (3.1) BS01 CA N/A GO:0005254 ... N/A 30628889
    511694 6n23:E (3.1) BS01 CA N/A GO:0005254 ... N/A 30628889
    511695 6n25:A (2.7) BS01 CA N/A GO:0005254 ... N/A 30628889
    511696 6n25:B (2.7) BS01 CA N/A GO:0005254 ... N/A 30628889
    511697 6n25:C (2.7) BS01 CA N/A GO:0005254 ... N/A 30628889
    511698 6n25:D (2.7) BS01 CA N/A GO:0005254 ... N/A 30628889
    511699 6n25:E (2.7) BS01 CA N/A GO:0005254 ... N/A 30628889
    511700 6n27:A (3.0) BS01 CA N/A GO:0005254 ... N/A 30628889
    511701 6n27:B (3.0) BS01 CA N/A GO:0005254 ... N/A 30628889
    511702 6n27:C (3.0) BS01 CA N/A GO:0005254 ... N/A 30628889
    511703 6n27:D (3.0) BS01 CA N/A GO:0005254 ... N/A 30628889
    511704 6n27:E (3.0) BS01 CA N/A GO:0005254 ... N/A 30628889
    511705 6n28:A (2.9) BS01 CA N/A GO:0005254 ... N/A 30628889
    511706 6n28:B (2.9) BS01 CA N/A GO:0005254 ... N/A 30628889
    511707 6n28:C (2.9) BS01 CA N/A GO:0005254 ... N/A 30628889
    511708 6n28:D (2.9) BS01 CA N/A GO:0005254 ... N/A 30628889
    511709 6n28:E (2.9) BS01 CA N/A GO:0005254 ... N/A 30628889
    511710 6n29:A (2.5) BS01 CA ? N/A P04275 30642920
    511711 6n29:A (2.5) BS02 CA ? N/A P04275 30642920
    511712 6n29:B (2.5) BS01 CA ? N/A P04275 30642920
    511713 6n2a:A (1.88) BS01 PLP 4.1.1.20 GO:0003824 ... Q949X7 N/A
    511714 6n2a:A (1.88) BS02 LYS 4.1.1.20 GO:0003824 ... Q949X7 N/A
    511715 6n2a:A (1.88) BS03 LYS 4.1.1.20 GO:0003824 ... Q949X7 N/A
    511716 6n2a:B (1.88) BS01 LYS 4.1.1.20 GO:0003824 ... Q949X7 N/A
    511717 6n2a:B (1.88) BS02 PLP 4.1.1.20 GO:0003824 ... Q949X7 N/A
    511718 6n2a:B (1.88) BS03 LYS 4.1.1.20 GO:0003824 ... Q949X7 N/A
    511719 6n2b:A (2.65) BS01 CA ? GO:0016020 ... E4S4B2 30478233
    511720 6n2b:B (2.65) BS01 CA ? GO:0016020 ... E4S4B2 30478233
    511721 6n2c:A (1.75) BS01 ZN ? GO:0046872 ... E4Q7C4 30478233
    511722 6n2c:B (1.75) BS01 ZN ? GO:0046872 ... E4Q7C4 30478233
    511723 6n2c:B (1.75) BS02 GOA ? GO:0046872 ... E4Q7C4 30478233
    511724 6n2c:B (1.75) BS03 OXL ? GO:0046872 ... E4Q7C4 30478233
    511725 6n2e:A (2.9) BS01 CA ? GO:0005509 ... Q96QU1 32963095
    511726 6n2e:A (2.9) BS02 CA ? GO:0005509 ... Q96QU1 32963095
    511727 6n2e:A (2.9) BS03 CA ? GO:0005509 ... Q96QU1 32963095
    511728 6n2e:A (2.9) BS04 CA ? GO:0005509 ... Q96QU1 32963095
    511729 6n2e:A (2.9) BS05 CA ? GO:0005509 ... Q96QU1 32963095
    511730 6n2e:B (2.9) BS01 CA ? GO:0005509 ... Q96QU1 32963095
    511731 6n2e:B (2.9) BS02 CA ? GO:0005509 ... Q96QU1 32963095
    511732 6n2e:B (2.9) BS03 CA ? GO:0005509 ... Q96QU1 32963095
    511733 6n2e:B (2.9) BS04 CA ? GO:0005509 ... Q96QU1 32963095
    511734 6n2e:B (2.9) BS05 CA ? GO:0005509 ... Q96QU1 32963095
    511735 6n2e:C (2.9) BS01 CA ? GO:0005509 ... Q99PF4 32963095
    511736 6n2e:C (2.9) BS02 CA ? GO:0005509 ... Q99PF4 32963095
    511737 6n2e:C (2.9) BS03 CA ? GO:0005509 ... Q99PF4 32963095
    511738 6n2e:C (2.9) BS04 CA ? GO:0005509 ... Q99PF4 32963095
    511739 6n2e:D (2.9) BS01 CA ? GO:0005509 ... Q99PF4 32963095
    511740 6n2e:D (2.9) BS02 CA ? GO:0005509 ... Q99PF4 32963095
    511741 6n2e:D (2.9) BS03 CA ? GO:0005509 ... Q99PF4 32963095
    511742 6n2e:D (2.9) BS04 CA ? GO:0005509 ... Q99PF4 32963095
    511743 6n2f:A (2.27) BS01 LYS 4.1.1.20 GO:0003824 ... Q94A94 N/A
    511744 6n2f:B (2.27) BS01 PLP 4.1.1.20 GO:0003824 ... Q94A94 N/A
    511745 6n2f:B (2.27) BS02 LYS 4.1.1.20 GO:0003824 ... Q94A94 N/A
    511746 6n2i:A (3.5) BS01 ADP 3.4.21.53 GO:0004176 ... P0A9M0 31237118
    511747 6n2j:A (1.8) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 30613331
    511748 6n2j:A (1.8) BS02 K9M 3.6.5.2 GO:0003924 ... P01116 30613331
    511749 6n2k:A (1.72) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 30613331
    511750 6n2k:A (1.72) BS02 K9J 3.6.5.2 GO:0003924 ... P01116 30613331
    511751 6n2m:A (-1.00) BS01 ZN ? GO:0042981 ... Q9H257 31296852
    511752 6n2m:B (-1.00) BS01 ZN ? GO:0042981 ... Q9H257 31296852
    511753 6n2n:A (1.937) BS01 TPP ? GO:0006979 ... A0L8G4 31080943
    511754 6n2n:B (1.937) BS01 SF4 ? GO:0003824 ... A0L8G5 31080943
    511755 6n2n:B (1.937) BS02 TPP ? GO:0003824 ... A0L8G5 31080943
    511756 6n2n:B (1.937) BS03 MG ? GO:0003824 ... A0L8G5 31080943
    511757 6n2n:C (1.937) BS01 TPP ? GO:0006979 ... A0L8G4 31080943
    511758 6n2n:D (1.937) BS01 SF4 ? GO:0003824 ... A0L8G5 31080943
    511759 6n2n:D (1.937) BS02 TPP ? GO:0003824 ... A0L8G5 31080943
    511760 6n2n:D (1.937) BS03 MG ? GO:0003824 ... A0L8G5 31080943
    511761 6n2o:A (2.824) BS01 AKG ? GO:0006979 ... A0L8G4 31080943
    511762 6n2o:A (2.824) BS02 COA ? GO:0006979 ... A0L8G4 31080943
    511763 6n2o:A (2.824) BS03 TPP ? GO:0006979 ... A0L8G4 31080943
    511764 6n2o:B (2.824) BS01 AKG ? GO:0003824 ... A0L8G5 31080943
    511765 6n2o:B (2.824) BS02 COA ? GO:0003824 ... A0L8G5 31080943
    511766 6n2o:B (2.824) BS03 SF4 ? GO:0003824 ... A0L8G5 31080943
    511767 6n2o:B (2.824) BS04 TPP ? GO:0003824 ... A0L8G5 31080943
    511768 6n2o:B (2.824) BS05 MG ? GO:0003824 ... A0L8G5 31080943
    511769 6n2o:C (2.824) BS01 SCA ? GO:0006979 ... A0L8G4 31080943
    511770 6n2o:C (2.824) BS02 TPP ? GO:0006979 ... A0L8G4 31080943
    511771 6n2o:D (2.824) BS01 SCA ? GO:0003824 ... A0L8G5 31080943
    511772 6n2o:D (2.824) BS02 SF4 ? GO:0003824 ... A0L8G5 31080943
    511773 6n2o:D (2.824) BS03 TPP ? GO:0003824 ... A0L8G5 31080943
    511774 6n2o:D (2.824) BS04 MG ? GO:0003824 ... A0L8G5 31080943
    511775 6n2r:A (2.1) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 30885943
    511776 6n2r:A (2.1) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 30885943
    511777 6n2r:A (2.1) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 30885943
    511778 6n2s:A (2.457) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 30885943
    511779 6n2s:A (2.457) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 30885943
    511780 6n2s:A (2.457) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 30885943
    511781 6n2s:A (2.457) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 30885943
    511782 6n2s:A (2.457) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 30885943
    511783 6n2s:A (2.457) BS06 1GC 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 30885943
    511784 6n2t:A (2.6) BS01 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 30885943
    511785 6n2t:A (2.6) BS02 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 30885943
    511786 6n2t:A (2.6) BS03 dna 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 30885943
    511787 6n2t:A (2.6) BS04 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 30885943
    511788 6n2t:A (2.6) BS05 MG 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 30885943
    511789 6n2t:A (2.6) BS06 1GC 2.7.7.7
    4.2.99.-
    4.2.99.18
    GO:0001701 ... P06746 30885943
    511790 6n2w:A (2.71) BS01 FE2 1.13.11.-
    1.13.11.34
    GO:0001676 ... P09917 32393899
    511791 6n2w:B (2.71) BS01 FE2 1.13.11.-
    1.13.11.34
    GO:0001676 ... P09917 32393899
    511792 6n2w:B (2.71) BS02 30Z 1.13.11.-
    1.13.11.34
    GO:0001676 ... P09917 32393899 BindingDB: IC50=100nM
    511793 6n2x:H (3.0) BS01 MAN ? N/A P0DOX5 12829775
    511794 6n2x:M (3.0) BS01 MAN ? N/A P0DOX5 12829775
    511795 6n2x:M (3.0) BS02 MAN ? N/A P0DOX5 12829775
    511796 6n2y:A (3.0) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 30724163
    511797 6n2y:B (3.0) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 30724163
    511798 6n2y:B (3.0) BS02 ADP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 30724163
    511799 6n2y:C (3.0) BS01 ATP 7.1.2.2 GO:0005524 ... A0A0M3VGF9 30724163
    511800 6n2y:E (3.0) BS01 PO4 7.1.2.2 GO:0005524 ... A0A0M4U1P9 30724163

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
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