SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 2553 2554 2555 2556 2557 2558 2559 2560 2561 2562 2563 2564 2565 2566 2567 2568 2569 2570 2571 2572 2573 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    512401 6n8j:b (3.5) BS01 rna ? GO:0000054 ... Q02892 30814529
    512402 6n8j:b (3.5) BS02 rna ? GO:0000054 ... Q02892 30814529
    512403 6n8j:b (3.5) BS03 GTP ? GO:0000054 ... Q02892 30814529
    512404 6n8j:c (3.5) BS01 rna ? GO:0002181 ... P14120 30814529
    512405 6n8j:d (3.5) BS01 rna ? GO:0002181 ... P0C2H8 30814529
    512406 6n8j:e (3.5) BS01 rna ? GO:0002181 ... P38061 30814529
    512407 6n8j:f (3.5) BS01 rna ? GO:0000027 ... P05744 30814529
    512408 6n8j:g (3.5) BS01 rna ? GO:0002181 ... P87262 30814529
    512409 6n8j:h (3.5) BS01 rna ? GO:0000463 ... P0CX84 30814529
    512410 6n8j:h (3.5) BS02 rna ? GO:0000463 ... P0CX84 30814529
    512411 6n8j:i (3.5) BS01 rna ? GO:0002181 ... P05745 30814529
    512412 6n8j:j (3.5) BS01 rna ? GO:0000448 ... P49166 30814529
    512413 6n8j:j (3.5) BS02 rna ? GO:0000448 ... P49166 30814529
    512414 6n8j:k (3.5) BS01 rna ? GO:0002181 ... P49167 30814529
    512415 6n8j:l (3.5) BS01 rna ? GO:0002181 ... P04650 30814529
    512416 6n8j:l (3.5) BS02 rna ? GO:0002181 ... P04650 30814529
    512417 6n8j:m (3.5) BS01 rna ? GO:0000055 ... P53742 30814529
    512418 6n8j:m (3.5) BS02 GTP ? GO:0000055 ... P53742 30814529
    512419 6n8j:o (3.5) BS01 rna ? GO:0002181 ... P05747 30814529
    512420 6n8j:p (3.5) BS01 rna ? GO:0002181 ... P0CX25 30814529
    512421 6n8j:q (3.5) BS01 rna ? GO:0002181 ... P0CX27 30814529
    512422 6n8j:r (3.5) BS01 rna ? GO:0000460 ... P40078 30814529
    512423 6n8j:u (3.5) BS01 rna ? GO:0001671 ... Q07915 30814529
    512424 6n8j:y (3.5) BS01 rna ? GO:0000054 ... Q12522 30814529
    512425 6n8j:z (3.5) BS01 rna ? GO:0003674 ... P38202 30814529
    512426 6n8k:A (3.6) BS01 rna ? GO:0002181 ... P0CX45 30814529
    512427 6n8k:B (3.6) BS01 rna ? GO:0000027 ... P14126 30814529
    512428 6n8k:C (3.6) BS01 rna ? GO:0002181 ... P10664 30814529
    512429 6n8k:C (3.6) BS02 rna ? GO:0002181 ... P10664 30814529
    512430 6n8k:D (3.6) BS01 rna ? GO:0000027 ... P26321 30814529
    512431 6n8k:D (3.6) BS02 rna ? GO:0000027 ... P26321 30814529
    512432 6n8k:E (3.6) BS01 rna ? GO:0000027 ... Q02326 30814529
    512433 6n8k:F (3.6) BS01 rna ? GO:0000463 ... P05737 30814529
    512434 6n8k:F (3.6) BS02 rna ? GO:0000463 ... P05737 30814529
    512435 6n8k:G (3.6) BS01 rna ? GO:0000470 ... P17076 30814529
    512436 6n8k:G (3.6) BS02 rna ? GO:0000470 ... P17076 30814529
    512437 6n8k:H (3.6) BS01 rna ? GO:0002181 ... P05738 30814529
    512438 6n8k:I (3.6) BS01 rna ? GO:0000055 ... Q08004 30814529
    512439 6n8k:J (3.6) BS01 rna ? GO:0000027 ... P0C0W9 30814529
    512440 6n8k:J (3.6) BS02 rna ? GO:0000027 ... P0C0W9 30814529
    512441 6n8k:L (3.6) BS01 rna ? GO:0002181 ... Q12690 30814529
    512442 6n8k:L (3.6) BS02 rna ? GO:0002181 ... Q12690 30814529
    512443 6n8k:M (3.6) BS01 rna ? GO:0000027 ... P36105 30814529
    512444 6n8k:N (3.6) BS01 rna ? GO:0002181 ... P05748 30814529
    512445 6n8k:N (3.6) BS02 rna ? GO:0002181 ... P05748 30814529
    512446 6n8k:O (3.6) BS01 rna ? GO:0000470 ... P26784 30814529
    512447 6n8k:P (3.6) BS01 rna ? GO:0000448 ... P05740 30814529
    512448 6n8k:P (3.6) BS02 rna ? GO:0000448 ... P05740 30814529
    512449 6n8k:Q (3.6) BS01 rna ? GO:0002181 ... P0CX49 30814529
    512450 6n8k:R (3.6) BS01 rna ? GO:0002181 ... P0CX82 30814529
    512451 6n8k:S (3.6) BS01 rna ? GO:0002181 ... P0CX23 30814529
    512452 6n8k:S (3.6) BS02 rna ? GO:0002181 ... P0CX23 30814529
    512453 6n8k:T (3.6) BS01 rna ? GO:0002181 ... Q02753 30814529
    512454 6n8k:U (3.6) BS01 rna ? GO:0002181 ... P05749 30814529
    512455 6n8k:V (3.6) BS01 rna ? GO:0002181 ... P0CX41 30814529
    512456 6n8k:W (3.6) BS01 rna ? GO:0000027 ... P33201 30814529
    512457 6n8k:X (3.6) BS01 rna ? GO:0000027 ... P04456 30814529
    512458 6n8k:X (3.6) BS02 rna ? GO:0000027 ... P04456 30814529
    512459 6n8k:Y (3.6) BS01 rna ? GO:0002181 ... P05743 30814529
    512460 6n8k:Y (3.6) BS02 rna ? GO:0002181 ... P05743 30814529
    512461 6n8k:Z (3.6) BS01 rna ? GO:0002181 ... P0C2H6 30814529
    512462 6n8k:a (3.6) BS01 rna ? GO:0002181 ... P02406 30814529
    512463 6n8k:b (3.6) BS01 rna ? GO:0000054 ... Q02892 30814529
    512464 6n8k:b (3.6) BS02 rna ? GO:0000054 ... Q02892 30814529
    512465 6n8k:b (3.6) BS03 GTP ? GO:0000054 ... Q02892 30814529
    512466 6n8k:b (3.6) BS04 MG ? GO:0000054 ... Q02892 30814529
    512467 6n8k:c (3.6) BS01 rna ? GO:0002181 ... P14120 30814529
    512468 6n8k:d (3.6) BS01 rna ? GO:0002181 ... P0C2H8 30814529
    512469 6n8k:e (3.6) BS01 rna ? GO:0002181 ... P38061 30814529
    512470 6n8k:f (3.6) BS01 rna ? GO:0000027 ... P05744 30814529
    512471 6n8k:g (3.6) BS01 rna ? GO:0002181 ... P87262 30814529
    512472 6n8k:h (3.6) BS01 rna ? GO:0000463 ... P0CX84 30814529
    512473 6n8k:h (3.6) BS02 rna ? GO:0000463 ... P0CX84 30814529
    512474 6n8k:i (3.6) BS01 rna ? GO:0002181 ... P05745 30814529
    512475 6n8k:j (3.6) BS01 rna ? GO:0000448 ... P49166 30814529
    512476 6n8k:j (3.6) BS02 rna ? GO:0000448 ... P49166 30814529
    512477 6n8k:k (3.6) BS01 rna ? GO:0002181 ... P49167 30814529
    512478 6n8k:l (3.6) BS01 rna ? GO:0002181 ... P04650 30814529
    512479 6n8k:l (3.6) BS02 rna ? GO:0002181 ... P04650 30814529
    512480 6n8k:o (3.6) BS01 rna ? GO:0002181 ... P05747 30814529
    512481 6n8k:p (3.6) BS01 rna ? GO:0002181 ... P0CX25 30814529
    512482 6n8k:q (3.6) BS01 rna ? GO:0002181 ... P0CX27 30814529
    512483 6n8k:s (3.6) BS01 rna N/A N/A N/A 30814529
    512484 6n8k:u (3.6) BS01 rna ? GO:0001671 ... Q07915 30814529
    512485 6n8k:v (3.6) BS01 rna ? GO:0000055 ... P38861 30814529
    512486 6n8k:y (3.6) BS01 rna ? GO:0000054 ... Q12522 30814529
    512487 6n8k:z (3.6) BS01 rna ? GO:0003674 ... P38202 30814529
    512488 6n8l:A (3.6) BS01 rna ? GO:0002181 ... P0CX45 30814529
    512489 6n8l:B (3.6) BS01 rna ? GO:0000027 ... P14126 30814529
    512490 6n8l:C (3.6) BS01 rna ? GO:0002181 ... P10664 30814529
    512491 6n8l:C (3.6) BS02 rna ? GO:0002181 ... P10664 30814529
    512492 6n8l:D (3.6) BS01 rna ? GO:0000027 ... P26321 30814529
    512493 6n8l:D (3.6) BS02 rna ? GO:0000027 ... P26321 30814529
    512494 6n8l:E (3.6) BS01 rna ? GO:0000027 ... Q02326 30814529
    512495 6n8l:F (3.6) BS01 rna ? GO:0000463 ... P05737 30814529
    512496 6n8l:F (3.6) BS02 rna ? GO:0000463 ... P05737 30814529
    512497 6n8l:G (3.6) BS01 rna ? GO:0000470 ... P17076 30814529
    512498 6n8l:G (3.6) BS02 rna ? GO:0000470 ... P17076 30814529
    512499 6n8l:H (3.6) BS01 rna ? GO:0002181 ... P05738 30814529
    512500 6n8l:I (3.6) BS01 rna ? GO:0000055 ... Q08004 30814529
    512501 6n8l:J (3.6) BS01 rna ? GO:0000027 ... P0C0W9 30814529
    512502 6n8l:J (3.6) BS02 rna ? GO:0000027 ... P0C0W9 30814529
    512503 6n8l:L (3.6) BS01 rna ? GO:0002181 ... Q12690 30814529
    512504 6n8l:L (3.6) BS02 rna ? GO:0002181 ... Q12690 30814529
    512505 6n8l:M (3.6) BS01 rna ? GO:0000027 ... P36105 30814529
    512506 6n8l:N (3.6) BS01 rna ? GO:0002181 ... P05748 30814529
    512507 6n8l:N (3.6) BS02 rna ? GO:0002181 ... P05748 30814529
    512508 6n8l:O (3.6) BS01 rna ? GO:0000470 ... P26784 30814529
    512509 6n8l:P (3.6) BS01 rna ? GO:0000448 ... P05740 30814529
    512510 6n8l:P (3.6) BS02 rna ? GO:0000448 ... P05740 30814529
    512511 6n8l:Q (3.6) BS01 rna ? GO:0002181 ... P0CX49 30814529
    512512 6n8l:R (3.6) BS01 rna ? GO:0002181 ... P0CX82 30814529
    512513 6n8l:S (3.6) BS01 rna ? GO:0002181 ... P0CX23 30814529
    512514 6n8l:S (3.6) BS02 rna ? GO:0002181 ... P0CX23 30814529
    512515 6n8l:T (3.6) BS01 rna ? GO:0002181 ... Q02753 30814529
    512516 6n8l:U (3.6) BS01 rna ? GO:0002181 ... P05749 30814529
    512517 6n8l:V (3.6) BS01 rna ? GO:0002181 ... P0CX41 30814529
    512518 6n8l:W (3.6) BS01 rna ? GO:0000027 ... P33201 30814529
    512519 6n8l:X (3.6) BS01 rna ? GO:0000027 ... P04456 30814529
    512520 6n8l:X (3.6) BS02 rna ? GO:0000027 ... P04456 30814529
    512521 6n8l:Y (3.6) BS01 rna ? GO:0002181 ... P05743 30814529
    512522 6n8l:Y (3.6) BS02 rna ? GO:0002181 ... P05743 30814529
    512523 6n8l:Z (3.6) BS01 rna ? GO:0002181 ... P0C2H6 30814529
    512524 6n8l:a (3.6) BS01 rna ? GO:0002181 ... P02406 30814529
    512525 6n8l:b (3.6) BS01 rna ? GO:0000054 ... Q02892 30814529
    512526 6n8l:b (3.6) BS02 rna ? GO:0000054 ... Q02892 30814529
    512527 6n8l:c (3.6) BS01 rna ? GO:0002181 ... P14120 30814529
    512528 6n8l:d (3.6) BS01 rna ? GO:0002181 ... P0C2H8 30814529
    512529 6n8l:e (3.6) BS01 rna ? GO:0002181 ... P38061 30814529
    512530 6n8l:f (3.6) BS01 rna ? GO:0000027 ... P05744 30814529
    512531 6n8l:g (3.6) BS01 rna ? GO:0002181 ... P87262 30814529
    512532 6n8l:h (3.6) BS01 rna ? GO:0000463 ... P0CX84 30814529
    512533 6n8l:h (3.6) BS02 rna ? GO:0000463 ... P0CX84 30814529
    512534 6n8l:i (3.6) BS01 rna ? GO:0002181 ... P05745 30814529
    512535 6n8l:j (3.6) BS01 rna ? GO:0000448 ... P49166 30814529
    512536 6n8l:j (3.6) BS02 rna ? GO:0000448 ... P49166 30814529
    512537 6n8l:k (3.6) BS01 rna ? GO:0002181 ... P49167 30814529
    512538 6n8l:l (3.6) BS01 rna ? GO:0002181 ... P04650 30814529
    512539 6n8l:l (3.6) BS02 rna ? GO:0002181 ... P04650 30814529
    512540 6n8l:o (3.6) BS01 rna ? GO:0002181 ... P05747 30814529
    512541 6n8l:p (3.6) BS01 rna ? GO:0002181 ... P0CX25 30814529
    512542 6n8l:q (3.6) BS01 rna ? GO:0002181 ... P0CX27 30814529
    512543 6n8l:s (3.6) BS01 rna N/A N/A N/A 30814529
    512544 6n8l:u (3.6) BS01 rna ? GO:0001671 ... Q07915 30814529
    512545 6n8l:v (3.6) BS01 rna ? GO:0000055 ... P38861 30814529
    512546 6n8l:y (3.6) BS01 rna ? GO:0000054 ... Q12522 30814529
    512547 6n8l:z (3.6) BS01 rna ? GO:0003674 ... P38202 30814529
    512548 6n8m:D (3.5) BS01 rna ? GO:0002181 ... P0CX45 30814529
    512549 6n8m:E (3.5) BS01 rna ? GO:0000027 ... P14126 30814529
    512550 6n8m:F (3.5) BS01 rna ? GO:0002181 ... P10664 30814529
    512551 6n8m:F (3.5) BS02 rna ? GO:0002181 ... P10664 30814529
    512552 6n8m:G (3.5) BS01 rna ? GO:0000027 ... P26321 30814529
    512553 6n8m:G (3.5) BS02 rna ? GO:0000027 ... P26321 30814529
    512554 6n8m:H (3.5) BS01 rna ? GO:0000027 ... Q02326 30814529
    512555 6n8m:I (3.5) BS01 rna ? GO:0000463 ... P05737 30814529
    512556 6n8m:I (3.5) BS02 rna ? GO:0000463 ... P05737 30814529
    512557 6n8m:J (3.5) BS01 rna ? GO:0000470 ... P17076 30814529
    512558 6n8m:J (3.5) BS02 rna ? GO:0000470 ... P17076 30814529
    512559 6n8m:K (3.5) BS01 rna ? GO:0002181 ... P05738 30814529
    512560 6n8m:L (3.5) BS01 rna ? GO:0003735 ... P0CX53 30814529
    512561 6n8m:M (3.5) BS01 rna ? GO:0000027 ... P0C0W9 30814529
    512562 6n8m:M (3.5) BS02 rna ? GO:0000027 ... P0C0W9 30814529
    512563 6n8m:N (3.5) BS01 rna ? GO:0002181 ... Q12690 30814529
    512564 6n8m:O (3.5) BS01 rna ? GO:0000027 ... P36105 30814529
    512565 6n8m:Q (3.5) BS01 rna ? GO:0002181 ... P0CX27 30814529
    512566 6n8m:R (3.5) BS01 rna ? GO:0002181 ... P0CX25 30814529
    512567 6n8m:S (3.5) BS01 rna N/A N/A N/A 30814529
    512568 6n8m:V (3.5) BS01 rna ? GO:0000055 ... P38861 30814529
    512569 6n8m:X (3.5) BS01 rna ? GO:0000054 ... Q12522 30814529
    512570 6n8m:Y (3.5) BS01 rna 3.1.3.48 GO:0000027 ... Q02256 30814529
    512571 6n8m:a (3.5) BS01 rna ? GO:0002181 ... P05748 30814529
    512572 6n8m:a (3.5) BS02 rna ? GO:0002181 ... P05748 30814529
    512573 6n8m:b (3.5) BS01 rna ? GO:0000470 ... P26784 30814529
    512574 6n8m:c (3.5) BS01 rna ? GO:0000448 ... P05740 30814529
    512575 6n8m:c (3.5) BS02 rna ? GO:0000448 ... P05740 30814529
    512576 6n8m:d (3.5) BS01 rna ? GO:0002181 ... P0CX49 30814529
    512577 6n8m:e (3.5) BS01 rna ? GO:0002181 ... P0CX82 30814529
    512578 6n8m:f (3.5) BS01 rna ? GO:0002181 ... P0CX23 30814529
    512579 6n8m:f (3.5) BS02 rna ? GO:0002181 ... P0CX23 30814529
    512580 6n8m:g (3.5) BS01 rna ? GO:0002181 ... Q02753 30814529
    512581 6n8m:g (3.5) BS02 rna ? GO:0002181 ... Q02753 30814529
    512582 6n8m:h (3.5) BS01 rna ? GO:0002181 ... P05749 30814529
    512583 6n8m:i (3.5) BS01 rna ? GO:0002181 ... P0CX41 30814529
    512584 6n8m:j (3.5) BS01 rna ? GO:0002181 ... P04449 30814529
    512585 6n8m:k (3.5) BS01 rna ? GO:0000027 ... P04456 30814529
    512586 6n8m:k (3.5) BS02 rna ? GO:0000027 ... P04456 30814529
    512587 6n8m:l (3.5) BS01 rna ? GO:0002181 ... P05743 30814529
    512588 6n8m:l (3.5) BS02 rna ? GO:0002181 ... P05743 30814529
    512589 6n8m:m (3.5) BS01 rna ? GO:0002181 ... P0C2H6 30814529
    512590 6n8m:n (3.5) BS01 rna ? GO:0002181 ... P02406 30814529
    512591 6n8m:o (3.5) BS01 rna ? GO:0002181 ... P05747 30814529
    512592 6n8m:p (3.5) BS01 rna ? GO:0002181 ... P14120 30814529
    512593 6n8m:q (3.5) BS01 rna ? GO:0002181 ... P0C2H8 30814529
    512594 6n8m:r (3.5) BS01 rna ? GO:0002181 ... P38061 30814529
    512595 6n8m:s (3.5) BS01 rna ? GO:0000027 ... P05744 30814529
    512596 6n8m:t (3.5) BS01 rna ? GO:0002181 ... P87262 30814529
    512597 6n8m:u (3.5) BS01 rna ? GO:0000463 ... P0CX84 30814529
    512598 6n8m:u (3.5) BS02 rna ? GO:0000463 ... P0CX84 30814529
    512599 6n8m:v (3.5) BS01 rna ? GO:0002181 ... P05745 30814529
    512600 6n8m:w (3.5) BS01 rna ? GO:0000448 ... P49166 30814529

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).