SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    513001 6n9e:2t (3.7) BS01 rna ? GO:0003723 ... P80380 30520988
    513002 6n9f:10 (3.7) BS01 rna ? GO:0003735 ... P60493 30520988
    513003 6n9f:10 (3.7) BS02 rna ? GO:0003735 ... P60493 30520988
    513004 6n9f:11 (3.7) BS01 rna ? GO:0003735 ... P60494 30520988
    513005 6n9f:12 (3.7) BS01 rna ? GO:0003735 ... Q5SHP6 30520988
    513006 6n9f:13 (3.7) BS01 rna ? GO:0003735 ... Q5SHQ6 30520988
    513007 6n9f:13 (3.7) BS02 rna ? GO:0003735 ... Q5SHQ6 30520988
    513008 6n9f:14 (3.7) BS01 rna ? GO:0003735 ... Q5SJE1 30520988
    513009 6n9f:14 (3.7) BS02 ZN ? GO:0003735 ... Q5SJE1 30520988
    513010 6n9f:15 (3.7) BS01 rna ? GO:0003735 ... P80339 30520988
    513011 6n9f:15 (3.7) BS02 ZN ? GO:0003735 ... P80339 30520988
    513012 6n9f:16 (3.7) BS01 rna ? GO:0000049 ... P35871 30520988
    513013 6n9f:16 (3.7) BS02 ZN ? GO:0000049 ... P35871 30520988
    513014 6n9f:17 (3.7) BS01 rna ? GO:0003735 ... P80340 30520988
    513015 6n9f:18 (3.7) BS01 rna ? GO:0003735 ... Q5SKU1 30520988
    513016 6n9f:19 (3.7) BS01 rna ? GO:0003735 ... Q5SHR2 30520988
    513017 6n9f:19 (3.7) BS02 ZN ? GO:0003735 ... Q5SHR2 30520988
    513018 6n9f:1D (3.7) BS01 rna ? GO:0002181 ... P60405 30520988
    513019 6n9f:1D (3.7) BS02 rna ? GO:0002181 ... P60405 30520988
    513020 6n9f:1D (3.7) BS03 MG ? GO:0002181 ... P60405 30520988
    513021 6n9f:1E (3.7) BS01 rna ? GO:0003735 ... Q5SHN8 30520988
    513022 6n9f:1F (3.7) BS01 rna ? GO:0003735 ... Q5SHN9 30520988
    513023 6n9f:1G (3.7) BS01 rna ? GO:0000049 ... Q5SHQ0 30520988
    513024 6n9f:1G (3.7) BS02 rna ? GO:0000049 ... Q5SHQ0 30520988
    513025 6n9f:1G (3.7) BS03 MG ? GO:0000049 ... Q5SHQ0 30520988
    513026 6n9f:1H (3.7) BS01 rna ? GO:0002181 ... P0DOY8 30520988
    513027 6n9f:1I (3.7) BS01 rna ? GO:0003735 ... Q5SLQ1 30520988
    513028 6n9f:1N (3.7) BS01 rna ? GO:0003729 ... P60488 30520988
    513029 6n9f:1O (3.7) BS01 rna ? GO:0003735 ... Q5SHP8 30520988
    513030 6n9f:1O (3.7) BS02 rna ? GO:0003735 ... Q5SHP8 30520988
    513031 6n9f:1P (3.7) BS01 rna ? GO:0003735 ... Q5SHQ7 30520988
    513032 6n9f:1Q (3.7) BS01 rna ? GO:0000049 ... P60489 30520988
    513033 6n9f:1Q (3.7) BS02 rna ? GO:0000049 ... P60489 30520988
    513034 6n9f:1R (3.7) BS01 rna ? GO:0003735 ... Q9Z9H5 30520988
    513035 6n9f:1S (3.7) BS01 rna ? GO:0003735 ... Q5SHQ4 30520988
    513036 6n9f:1S (3.7) BS02 rna ? GO:0003735 ... Q5SHQ4 30520988
    513037 6n9f:1T (3.7) BS01 rna ? GO:0003735 ... P60490 30520988
    513038 6n9f:1T (3.7) BS02 rna ? GO:0003735 ... P60490 30520988
    513039 6n9f:1U (3.7) BS01 rna ? GO:0000027 ... P60491 30520988
    513040 6n9f:1V (3.7) BS01 rna ? GO:0003723 ... P60492 30520988
    513041 6n9f:1W (3.7) BS01 rna ? GO:0003735 ... Q5SHP3 30520988
    513042 6n9f:1X (3.7) BS01 rna ? GO:0003735 ... Q5SHP0 30520988
    513043 6n9f:1Y (3.7) BS01 rna ? GO:0003723 ... Q5SHP9 30520988
    513044 6n9f:1Y (3.7) BS02 ZN ? GO:0003723 ... Q5SHP9 30520988
    513045 6n9f:1Z (3.7) BS01 rna ? GO:0003723 ... Q5SHZ1 30520988
    513046 6n9f:1Z (3.7) BS02 rna ? GO:0003723 ... Q5SHZ1 30520988
    513047 6n9f:1b (3.7) BS01 rna ? GO:0003735 ... P80371 30520988
    513048 6n9f:1c (3.7) BS01 rna ? GO:0003676 ... P80372 30520988
    513049 6n9f:1d (3.7) BS01 rna ? GO:0003723 ... P80373 30520988
    513050 6n9f:1d (3.7) BS02 SF4 ? GO:0003723 ... P80373 30520988
    513051 6n9f:1e (3.7) BS01 rna ? GO:0003723 ... Q5SHQ5 30520988
    513052 6n9f:1f (3.7) BS01 rna ? GO:0003735 ... Q5SLP8 30520988
    513053 6n9f:1g (3.7) BS01 rna ? GO:0000049 ... P17291 30520988
    513054 6n9f:1h (3.7) BS01 rna ? GO:0003735 ... P0DOY9 30520988
    513055 6n9f:1i (3.7) BS01 rna ? GO:0000049 ... P80374 30520988
    513056 6n9f:1i (3.7) BS02 rna ? GO:0000049 ... P80374 30520988
    513057 6n9f:1j (3.7) BS01 rna ? GO:0000049 ... Q5SHN7 30520988
    513058 6n9f:1k (3.7) BS01 rna ? GO:0003735 ... P80376 30520988
    513059 6n9f:1l (3.7) BS01 rna ? GO:0000049 ... Q5SHN3 30520988
    513060 6n9f:1m (3.7) BS01 rna ? GO:0000049 ... P80377 30520988
    513061 6n9f:1m (3.7) BS02 rna ? GO:0000049 ... P80377 30520988
    513062 6n9f:1n (3.7) BS01 rna ? GO:0003735 ... P0DOY6 30520988
    513063 6n9f:1n (3.7) BS02 ZN ? GO:0003735 ... P0DOY6 30520988
    513064 6n9f:1o (3.7) BS01 rna ? GO:0003735 ... Q5SJ76 30520988
    513065 6n9f:1o (3.7) BS02 rna ? GO:0003735 ... Q5SJ76 30520988
    513066 6n9f:1p (3.7) BS01 rna ? GO:0003735 ... Q5SJH3 30520988
    513067 6n9f:1q (3.7) BS01 rna ? GO:0003735 ... P0DOY7 30520988
    513068 6n9f:1r (3.7) BS01 rna ? GO:0003735 ... Q5SLQ0 30520988
    513069 6n9f:1s (3.7) BS01 rna ? GO:0000028 ... Q5SHP2 30520988
    513070 6n9f:1t (3.7) BS01 rna ? GO:0003723 ... P80380 30520988
    513071 6n9f:1t (3.7) BS02 MG ? GO:0003723 ... P80380 30520988
    513072 6n9f:20 (3.7) BS01 rna ? GO:0003735 ... P60493 30520988
    513073 6n9f:20 (3.7) BS02 rna ? GO:0003735 ... P60493 30520988
    513074 6n9f:20 (3.7) BS03 rna ? GO:0003735 ... P60493 30520988
    513075 6n9f:21 (3.7) BS01 rna ? GO:0003735 ... P60494 30520988
    513076 6n9f:22 (3.7) BS01 rna ? GO:0003735 ... Q5SHP6 30520988
    513077 6n9f:23 (3.7) BS01 rna ? GO:0003735 ... Q5SHQ6 30520988
    513078 6n9f:23 (3.7) BS02 rna ? GO:0003735 ... Q5SHQ6 30520988
    513079 6n9f:24 (3.7) BS01 rna ? GO:0003735 ... Q5SJE1 30520988
    513080 6n9f:24 (3.7) BS02 ZN ? GO:0003735 ... Q5SJE1 30520988
    513081 6n9f:25 (3.7) BS01 rna ? GO:0003735 ... P80339 30520988
    513082 6n9f:25 (3.7) BS02 ZN ? GO:0003735 ... P80339 30520988
    513083 6n9f:26 (3.7) BS01 rna ? GO:0000049 ... P35871 30520988
    513084 6n9f:26 (3.7) BS02 ZN ? GO:0000049 ... P35871 30520988
    513085 6n9f:27 (3.7) BS01 rna ? GO:0003735 ... P80340 30520988
    513086 6n9f:28 (3.7) BS01 rna ? GO:0003735 ... Q5SKU1 30520988
    513087 6n9f:29 (3.7) BS01 rna ? GO:0003735 ... Q5SHR2 30520988
    513088 6n9f:29 (3.7) BS02 ZN ? GO:0003735 ... Q5SHR2 30520988
    513089 6n9f:2D (3.7) BS01 rna ? GO:0002181 ... P60405 30520988
    513090 6n9f:2D (3.7) BS02 rna ? GO:0002181 ... P60405 30520988
    513091 6n9f:2D (3.7) BS03 MG ? GO:0002181 ... P60405 30520988
    513092 6n9f:2E (3.7) BS01 rna ? GO:0003735 ... Q5SHN8 30520988
    513093 6n9f:2F (3.7) BS01 rna ? GO:0003735 ... Q5SHN9 30520988
    513094 6n9f:2G (3.7) BS01 rna ? GO:0000049 ... Q5SHQ0 30520988
    513095 6n9f:2G (3.7) BS02 rna ? GO:0000049 ... Q5SHQ0 30520988
    513096 6n9f:2H (3.7) BS01 rna ? GO:0002181 ... P0DOY8 30520988
    513097 6n9f:2I (3.7) BS01 rna ? GO:0003735 ... Q5SLQ1 30520988
    513098 6n9f:2N (3.7) BS01 rna ? GO:0003729 ... P60488 30520988
    513099 6n9f:2O (3.7) BS01 rna ? GO:0003735 ... Q5SHP8 30520988
    513100 6n9f:2O (3.7) BS02 rna ? GO:0003735 ... Q5SHP8 30520988
    513101 6n9f:2P (3.7) BS01 rna ? GO:0003735 ... Q5SHQ7 30520988
    513102 6n9f:2Q (3.7) BS01 rna ? GO:0000049 ... P60489 30520988
    513103 6n9f:2Q (3.7) BS02 rna ? GO:0000049 ... P60489 30520988
    513104 6n9f:2R (3.7) BS01 rna ? GO:0003735 ... Q9Z9H5 30520988
    513105 6n9f:2S (3.7) BS01 rna ? GO:0003735 ... Q5SHQ4 30520988
    513106 6n9f:2S (3.7) BS02 rna ? GO:0003735 ... Q5SHQ4 30520988
    513107 6n9f:2T (3.7) BS01 rna ? GO:0003735 ... P60490 30520988
    513108 6n9f:2T (3.7) BS02 rna ? GO:0003735 ... P60490 30520988
    513109 6n9f:2U (3.7) BS01 rna ? GO:0000027 ... P60491 30520988
    513110 6n9f:2V (3.7) BS01 rna ? GO:0003723 ... P60492 30520988
    513111 6n9f:2W (3.7) BS01 rna ? GO:0003735 ... Q5SHP3 30520988
    513112 6n9f:2X (3.7) BS01 rna ? GO:0003735 ... Q5SHP0 30520988
    513113 6n9f:2X (3.7) BS02 MG ? GO:0003735 ... Q5SHP0 30520988
    513114 6n9f:2Y (3.7) BS01 rna ? GO:0003723 ... Q5SHP9 30520988
    513115 6n9f:2Y (3.7) BS02 ZN ? GO:0003723 ... Q5SHP9 30520988
    513116 6n9f:2Z (3.7) BS01 rna ? GO:0003723 ... Q5SHZ1 30520988
    513117 6n9f:2Z (3.7) BS02 rna ? GO:0003723 ... Q5SHZ1 30520988
    513118 6n9f:2b (3.7) BS01 rna ? GO:0003735 ... P80371 30520988
    513119 6n9f:2c (3.7) BS01 rna ? GO:0003676 ... P80372 30520988
    513120 6n9f:2d (3.7) BS01 rna ? GO:0003723 ... P80373 30520988
    513121 6n9f:2d (3.7) BS02 SF4 ? GO:0003723 ... P80373 30520988
    513122 6n9f:2e (3.7) BS01 rna ? GO:0003723 ... Q5SHQ5 30520988
    513123 6n9f:2f (3.7) BS01 rna ? GO:0003735 ... Q5SLP8 30520988
    513124 6n9f:2f (3.7) BS02 MG ? GO:0003735 ... Q5SLP8 30520988
    513125 6n9f:2g (3.7) BS01 rna ? GO:0000049 ... P17291 30520988
    513126 6n9f:2h (3.7) BS01 rna ? GO:0003735 ... P0DOY9 30520988
    513127 6n9f:2i (3.7) BS01 rna ? GO:0000049 ... P80374 30520988
    513128 6n9f:2i (3.7) BS02 rna ? GO:0000049 ... P80374 30520988
    513129 6n9f:2j (3.7) BS01 rna ? GO:0000049 ... Q5SHN7 30520988
    513130 6n9f:2k (3.7) BS01 rna ? GO:0003735 ... P80376 30520988
    513131 6n9f:2l (3.7) BS01 rna ? GO:0000049 ... Q5SHN3 30520988
    513132 6n9f:2m (3.7) BS01 rna ? GO:0000049 ... P80377 30520988
    513133 6n9f:2m (3.7) BS02 rna ? GO:0000049 ... P80377 30520988
    513134 6n9f:2n (3.7) BS01 rna ? GO:0003735 ... P0DOY6 30520988
    513135 6n9f:2n (3.7) BS02 ZN ? GO:0003735 ... P0DOY6 30520988
    513136 6n9f:2o (3.7) BS01 rna ? GO:0003735 ... Q5SJ76 30520988
    513137 6n9f:2o (3.7) BS02 rna ? GO:0003735 ... Q5SJ76 30520988
    513138 6n9f:2p (3.7) BS01 rna ? GO:0003735 ... Q5SJH3 30520988
    513139 6n9f:2q (3.7) BS01 rna ? GO:0003735 ... P0DOY7 30520988
    513140 6n9f:2q (3.7) BS02 MG ? GO:0003735 ... P0DOY7 30520988
    513141 6n9f:2r (3.7) BS01 rna ? GO:0003735 ... Q5SLQ0 30520988
    513142 6n9f:2s (3.7) BS01 rna ? GO:0000028 ... Q5SHP2 30520988
    513143 6n9f:2t (3.7) BS01 rna ? GO:0003723 ... P80380 30520988
    513144 6n9i:A (1.6) BS01 CO 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    513145 6n9i:A (1.6) BS02 FE 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    513146 6n9i:B (1.6) BS01 CO 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    513147 6n9i:B (1.6) BS02 FE 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    513148 6n9i:C (1.6) BS01 CO 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    513149 6n9i:C (1.6) BS02 FE 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    513150 6n9j:A (2.17) BS01 peptide ? N/A Q8A866 30835452
    513151 6n9j:B (2.17) BS01 peptide ? N/A Q8A866 30835452
    513152 6n9l:A (2.01) BS01 ZN ? GO:0003677 ... Q9WYV0 30892613
    513153 6n9l:A (2.01) BS02 ADP ? GO:0003677 ... Q9WYV0 30892613 MOAD: Kd=0.1uM
    513154 6n9l:A (2.01) BS03 ADP ? GO:0003677 ... Q9WYV0 30892613 MOAD: Kd=0.1uM
    513155 6n9m:A (1.449) BS01 DCF 3.5.4.4 GO:0004000 ... Q8ZPL9 N/A
    513156 6n9m:A (1.449) BS02 ZN 3.5.4.4 GO:0004000 ... Q8ZPL9 N/A
    513157 6n9m:A (1.449) BS03 CA 3.5.4.4 GO:0004000 ... Q8ZPL9 N/A
    513158 6n9p:A (2.23) BS01 KHD 2.7.10.2 GO:0004672 ... Q06187 30521698
    513159 6n9q:D (2.35) BS01 CO 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    513160 6n9q:D (2.35) BS02 HL4 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    513161 6n9q:D (2.35) BS03 FE 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    513162 6n9q:P (2.35) BS01 CO 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    513163 6n9q:P (2.35) BS02 HL4 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    513164 6n9q:P (2.35) BS03 FE 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    513165 6n9r:A (1.75) BS01 CO 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    513166 6n9r:A (1.75) BS02 FE 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    513167 6n9r:A (1.75) BS03 OHN 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    513168 6n9r:P (1.75) BS01 CO 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    513169 6n9r:P (1.75) BS02 FE 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    513170 6n9r:P (1.75) BS03 OHN 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    513171 6n9r:X (1.75) BS01 CO 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    513172 6n9r:X (1.75) BS02 FE 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    513173 6n9r:X (1.75) BS03 OHN 3.1.1.81 GO:0016787 ... A0A023DFE8 30864300
    513174 6n9t:A (2.576) BS01 peptide ? N/A Q6MZV7 30566343
    513175 6n9t:A (2.576) BS02 BMA ? N/A Q6MZV7 30566343
    513176 6n9t:B (2.576) BS01 peptide ? N/A Q6MZV7 30566343
    513177 6n9t:B (2.576) BS02 BMA ? N/A Q6MZV7 30566343
    513178 6n9u:E (3.7) BS01 dna 2.7.7.-
    3.6.4.12
    GO:0003677 ... P03692 30679383
    513179 6n9u:E (3.7) BS02 ZN 2.7.7.-
    3.6.4.12
    GO:0003677 ... P03692 30679383
    513180 6n9u:H (3.7) BS01 rna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 30679383
    513181 6n9u:H (3.7) BS02 dna 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 30679383
    513182 6n9u:H (3.7) BS03 TTP 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 30679383
    513183 6n9u:H (3.7) BS04 MG 2.7.7.7
    3.1.11.-
    GO:0000166 ... P00581 30679383
    513184 6n9v:A (4.0) BS01 dna 2.7.7.-
    3.6.4.12
    GO:0003677 ... P03692 30679383
    513185 6n9v:B (4.0) BS01 dna 2.7.7.-
    3.6.4.12
    GO:0003677 ... P03692 30679383
    513186 6n9v:B (4.0) BS02 TTP 2.7.7.-
    3.6.4.12
    GO:0003677 ... P03692 30679383
    513187 6n9v:B (4.0) BS03 MG 2.7.7.-
    3.6.4.12
    GO:0003677 ... P03692 30679383
    513188 6n9v:C (4.0) BS01 dna 2.7.7.-
    3.6.4.12
    GO:0003677 ... P03692 30679383
    513189 6n9v:C (4.0) BS02 TTP 2.7.7.-
    3.6.4.12
    GO:0003677 ... P03692 30679383
    513190 6n9v:C (4.0) BS03 MG 2.7.7.-
    3.6.4.12
    GO:0003677 ... P03692 30679383
    513191 6n9v:C (4.0) BS04 TTP 2.7.7.-
    3.6.4.12
    GO:0003677 ... P03692 30679383
    513192 6n9v:D (4.0) BS01 dna 2.7.7.-
    3.6.4.12
    GO:0003677 ... P03692 30679383
    513193 6n9v:D (4.0) BS02 TTP 2.7.7.-
    3.6.4.12
    GO:0003677 ... P03692 30679383
    513194 6n9v:D (4.0) BS03 MG 2.7.7.-
    3.6.4.12
    GO:0003677 ... P03692 30679383
    513195 6n9v:E (4.0) BS01 dna 2.7.7.-
    3.6.4.12
    GO:0003677 ... P03692 30679383
    513196 6n9v:E (4.0) BS02 ZN 2.7.7.-
    3.6.4.12
    GO:0003677 ... P03692 30679383
    513197 6n9v:E (4.0) BS03 TTP 2.7.7.-
    3.6.4.12
    GO:0003677 ... P03692 30679383
    513198 6n9v:E (4.0) BS04 MG 2.7.7.-
    3.6.4.12
    GO:0003677 ... P03692 30679383
    513199 6n9v:E (4.0) BS05 TTP 2.7.7.-
    3.6.4.12
    GO:0003677 ... P03692 30679383
    513200 6n9v:F (4.0) BS01 TTP 2.7.7.-
    3.6.4.12
    GO:0003677 ... P03692 30679383

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).