SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    513601 6nd4:O (4.3) BS02 rna ? GO:0000028 ... P25635 31206356
    513602 6nd4:S (4.3) BS01 rna ? GO:0000292 ... P40362 31206356
    513603 6nd4:T (4.3) BS01 rna ? GO:0003674 ... Q06078 31206356
    513604 6nd4:T (4.3) BS02 rna ? GO:0003674 ... Q06078 31206356
    513605 6nd4:U (4.3) BS01 rna ? GO:0000462 ... P33750 31206356
    513606 6nd4:U (4.3) BS02 rna ? GO:0000462 ... P33750 31206356
    513607 6nd4:U (4.3) BS03 rna ? GO:0000462 ... P33750 31206356
    513608 6nd4:W (4.3) BS01 rna ? GO:0000447 ... P40055 31206356
    513609 6nd4:Z (4.3) BS01 rna ? GO:0003723 ... P32899 31206356
    513610 6nd4:a (4.3) BS01 rna ? GO:0000154 ... Q12460 31206356
    513611 6nd4:b (4.3) BS01 rna ? GO:0030515 ... Q12499 31206356
    513612 6nd4:b (4.3) BS02 rna ? GO:0030515 ... Q12499 31206356
    513613 6nd4:e (4.3) BS01 rna ? GO:0000245 ... P39990 31206356
    513614 6nd4:f (4.3) BS01 rna ? GO:0000245 ... P39990 31206356
    513615 6nd4:g (4.3) BS01 rna ? GO:0000447 ... Q06506 31206356
    513616 6nd5:10 (2.6) BS01 rna ? GO:0003735 ... P60493 30733327
    513617 6nd5:10 (2.6) BS02 rna ? GO:0003735 ... P60493 30733327
    513618 6nd5:10 (2.6) BS03 MG ? GO:0003735 ... P60493 30733327
    513619 6nd5:10 (2.6) BS04 MG ? GO:0003735 ... P60493 30733327
    513620 6nd5:11 (2.6) BS01 rna ? GO:0003735 ... P60494 30733327
    513621 6nd5:11 (2.6) BS02 MG ? GO:0003735 ... P60494 30733327
    513622 6nd5:12 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 30733327
    513623 6nd5:12 (2.6) BS02 MG ? GO:0003735 ... Q5SHP6 30733327
    513624 6nd5:13 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 30733327
    513625 6nd5:13 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 30733327
    513626 6nd5:13 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 30733327
    513627 6nd5:14 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 30733327
    513628 6nd5:14 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 30733327
    513629 6nd5:15 (2.6) BS01 rna ? GO:0003735 ... P80339 30733327
    513630 6nd5:15 (2.6) BS02 MG ? GO:0003735 ... P80339 30733327
    513631 6nd5:15 (2.6) BS03 ZN ? GO:0003735 ... P80339 30733327
    513632 6nd5:16 (2.6) BS01 rna ? GO:0000049 ... P35871 30733327
    513633 6nd5:16 (2.6) BS02 MG ? GO:0000049 ... P35871 30733327
    513634 6nd5:16 (2.6) BS03 MG ? GO:0000049 ... P35871 30733327
    513635 6nd5:16 (2.6) BS04 ZN ? GO:0000049 ... P35871 30733327
    513636 6nd5:17 (2.6) BS01 rna ? GO:0003735 ... P80340 30733327
    513637 6nd5:17 (2.6) BS02 MG ? GO:0003735 ... P80340 30733327
    513638 6nd5:17 (2.6) BS03 MG ? GO:0003735 ... P80340 30733327
    513639 6nd5:17 (2.6) BS04 MG ? GO:0003735 ... P80340 30733327
    513640 6nd5:18 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 30733327
    513641 6nd5:18 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 30733327
    513642 6nd5:18 (2.6) BS03 MG ? GO:0003735 ... Q5SKU1 30733327
    513643 6nd5:19 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 30733327
    513644 6nd5:19 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 30733327
    513645 6nd5:1D (2.6) BS01 rna ? GO:0002181 ... P60405 30733327
    513646 6nd5:1D (2.6) BS02 rna ? GO:0002181 ... P60405 30733327
    513647 6nd5:1D (2.6) BS03 MG ? GO:0002181 ... P60405 30733327
    513648 6nd5:1D (2.6) BS04 MG ? GO:0002181 ... P60405 30733327
    513649 6nd5:1D (2.6) BS05 MG ? GO:0002181 ... P60405 30733327
    513650 6nd5:1D (2.6) BS06 MG ? GO:0002181 ... P60405 30733327
    513651 6nd5:1D (2.6) BS07 MG ? GO:0002181 ... P60405 30733327
    513652 6nd5:1D (2.6) BS08 MG ? GO:0002181 ... P60405 30733327
    513653 6nd5:1D (2.6) BS09 MG ? GO:0002181 ... P60405 30733327
    513654 6nd5:1D (2.6) BS10 MG ? GO:0002181 ... P60405 30733327
    513655 6nd5:1D (2.6) BS11 MG ? GO:0002181 ... P60405 30733327
    513656 6nd5:1D (2.6) BS12 MG ? GO:0002181 ... P60405 30733327
    513657 6nd5:1E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 30733327
    513658 6nd5:1E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 30733327
    513659 6nd5:1E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 30733327
    513660 6nd5:1E (2.6) BS04 MG ? GO:0003735 ... Q5SHN8 30733327
    513661 6nd5:1E (2.6) BS05 MG ? GO:0003735 ... Q5SHN8 30733327
    513662 6nd5:1E (2.6) BS06 MG ? GO:0003735 ... Q5SHN8 30733327
    513663 6nd5:1F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 30733327
    513664 6nd5:1F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 30733327
    513665 6nd5:1F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 30733327
    513666 6nd5:1F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 30733327
    513667 6nd5:1F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 30733327
    513668 6nd5:1F (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 30733327
    513669 6nd5:1F (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 30733327
    513670 6nd5:1F (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 30733327
    513671 6nd5:1F (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 30733327
    513672 6nd5:1F (2.6) BS10 MG ? GO:0003735 ... Q5SHN9 30733327
    513673 6nd5:1G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 30733327
    513674 6nd5:1G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 30733327
    513675 6nd5:1G (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 30733327
    513676 6nd5:1G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 30733327
    513677 6nd5:1G (2.6) BS05 MG ? GO:0000049 ... Q5SHQ0 30733327
    513678 6nd5:1H (2.6) BS01 rna ? GO:0002181 ... P0DOY8 30733327
    513679 6nd5:1I (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 30733327
    513680 6nd5:1I (2.6) BS02 MG ? GO:0003735 ... Q5SLQ1 30733327
    513681 6nd5:1N (2.6) BS01 rna ? GO:0003729 ... P60488 30733327
    513682 6nd5:1N (2.6) BS02 MG ? GO:0003729 ... P60488 30733327
    513683 6nd5:1N (2.6) BS03 MG ? GO:0003729 ... P60488 30733327
    513684 6nd5:1O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 30733327
    513685 6nd5:1O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 30733327
    513686 6nd5:1O (2.6) BS03 MG ? GO:0003735 ... Q5SHP8 30733327
    513687 6nd5:1O (2.6) BS04 MG ? GO:0003735 ... Q5SHP8 30733327
    513688 6nd5:1P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 30733327
    513689 6nd5:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 30733327
    513690 6nd5:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 30733327
    513691 6nd5:1P (2.6) BS04 MG ? GO:0003735 ... Q5SHQ7 30733327
    513692 6nd5:1P (2.6) BS05 MG ? GO:0003735 ... Q5SHQ7 30733327
    513693 6nd5:1P (2.6) BS06 MG ? GO:0003735 ... Q5SHQ7 30733327
    513694 6nd5:1Q (2.6) BS01 rna ? GO:0000049 ... P60489 30733327
    513695 6nd5:1Q (2.6) BS02 rna ? GO:0000049 ... P60489 30733327
    513696 6nd5:1Q (2.6) BS03 rna ? GO:0000049 ... P60489 30733327
    513697 6nd5:1Q (2.6) BS04 MG ? GO:0000049 ... P60489 30733327
    513698 6nd5:1Q (2.6) BS05 MG ? GO:0000049 ... P60489 30733327
    513699 6nd5:1Q (2.6) BS06 MG ? GO:0000049 ... P60489 30733327
    513700 6nd5:1Q (2.6) BS07 MG ? GO:0000049 ... P60489 30733327
    513701 6nd5:1Q (2.6) BS08 MG ? GO:0000049 ... P60489 30733327
    513702 6nd5:1R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 30733327
    513703 6nd5:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 30733327
    513704 6nd5:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 30733327
    513705 6nd5:1R (2.6) BS04 MG ? GO:0003735 ... Q9Z9H5 30733327
    513706 6nd5:1S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 30733327
    513707 6nd5:1S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 30733327
    513708 6nd5:1S (2.6) BS03 MG ? GO:0003735 ... Q5SHQ4 30733327
    513709 6nd5:1S (2.6) BS04 MG ? GO:0003735 ... Q5SHQ4 30733327
    513710 6nd5:1T (2.6) BS01 rna ? GO:0003735 ... P60490 30733327
    513711 6nd5:1T (2.6) BS02 rna ? GO:0003735 ... P60490 30733327
    513712 6nd5:1T (2.6) BS03 MG ? GO:0003735 ... P60490 30733327
    513713 6nd5:1U (2.6) BS01 rna ? GO:0000027 ... P60491 30733327
    513714 6nd5:1U (2.6) BS02 MG ? GO:0000027 ... P60491 30733327
    513715 6nd5:1U (2.6) BS03 MG ? GO:0000027 ... P60491 30733327
    513716 6nd5:1U (2.6) BS04 MG ? GO:0000027 ... P60491 30733327
    513717 6nd5:1U (2.6) BS05 MG ? GO:0000027 ... P60491 30733327
    513718 6nd5:1U (2.6) BS06 MG ? GO:0000027 ... P60491 30733327
    513719 6nd5:1U (2.6) BS07 MG ? GO:0000027 ... P60491 30733327
    513720 6nd5:1U (2.6) BS08 MG ? GO:0000027 ... P60491 30733327
    513721 6nd5:1U (2.6) BS09 MG ? GO:0000027 ... P60491 30733327
    513722 6nd5:1V (2.6) BS01 rna ? GO:0003723 ... P60492 30733327
    513723 6nd5:1V (2.6) BS02 MG ? GO:0003723 ... P60492 30733327
    513724 6nd5:1V (2.6) BS03 MG ? GO:0003723 ... P60492 30733327
    513725 6nd5:1V (2.6) BS04 MG ? GO:0003723 ... P60492 30733327
    513726 6nd5:1V (2.6) BS05 MG ? GO:0003723 ... P60492 30733327
    513727 6nd5:1V (2.6) BS06 MG ? GO:0003723 ... P60492 30733327
    513728 6nd5:1V (2.6) BS07 MG ? GO:0003723 ... P60492 30733327
    513729 6nd5:1W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 30733327
    513730 6nd5:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 30733327
    513731 6nd5:1W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 30733327
    513732 6nd5:1W (2.6) BS04 MG ? GO:0003735 ... Q5SHP3 30733327
    513733 6nd5:1X (2.6) BS01 rna ? GO:0003735 ... Q5SHP0 30733327
    513734 6nd5:1X (2.6) BS02 MG ? GO:0003735 ... Q5SHP0 30733327
    513735 6nd5:1X (2.6) BS03 MG ? GO:0003735 ... Q5SHP0 30733327
    513736 6nd5:1X (2.6) BS04 MG ? GO:0003735 ... Q5SHP0 30733327
    513737 6nd5:1X (2.6) BS05 MG ? GO:0003735 ... Q5SHP0 30733327
    513738 6nd5:1X (2.6) BS06 MG ? GO:0003735 ... Q5SHP0 30733327
    513739 6nd5:1Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 30733327
    513740 6nd5:1Y (2.6) BS02 MG ? GO:0003723 ... Q5SHP9 30733327
    513741 6nd5:1Y (2.6) BS03 ZN ? GO:0003723 ... Q5SHP9 30733327
    513742 6nd5:1Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 30733327
    513743 6nd5:1Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 30733327
    513744 6nd5:1b (2.6) BS01 rna ? GO:0003735 ... P80371 30733327
    513745 6nd5:1b (2.6) BS02 MG ? GO:0003735 ... P80371 30733327
    513746 6nd5:1c (2.6) BS01 rna ? GO:0003676 ... P80372 30733327
    513747 6nd5:1d (2.6) BS01 rna ? GO:0003723 ... P80373 30733327
    513748 6nd5:1d (2.6) BS02 SF4 ? GO:0003723 ... P80373 30733327
    513749 6nd5:1e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 30733327
    513750 6nd5:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 30733327
    513751 6nd5:1e (2.6) BS03 MG ? GO:0003723 ... Q5SHQ5 30733327
    513752 6nd5:1f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 30733327
    513753 6nd5:1f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 30733327
    513754 6nd5:1g (2.6) BS01 rna ? GO:0000049 ... P17291 30733327
    513755 6nd5:1g (2.6) BS02 rna ? GO:0000049 ... P17291 30733327
    513756 6nd5:1h (2.6) BS01 rna ? GO:0003735 ... P0DOY9 30733327
    513757 6nd5:1i (2.6) BS01 rna ? GO:0000049 ... P80374 30733327
    513758 6nd5:1i (2.6) BS02 rna ? GO:0000049 ... P80374 30733327
    513759 6nd5:1j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 30733327
    513760 6nd5:1k (2.6) BS01 rna ? GO:0003735 ... P80376 30733327
    513761 6nd5:1k (2.6) BS02 MG ? GO:0003735 ... P80376 30733327
    513762 6nd5:1l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 30733327
    513763 6nd5:1l (2.6) BS02 rna ? GO:0000049 ... Q5SHN3 30733327
    513764 6nd5:1l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 30733327
    513765 6nd5:1m (2.6) BS01 rna ? GO:0000049 ... P80377 30733327
    513766 6nd5:1m (2.6) BS02 rna ? GO:0000049 ... P80377 30733327
    513767 6nd5:1m (2.6) BS03 rna ? GO:0000049 ... P80377 30733327
    513768 6nd5:1m (2.6) BS04 MG ? GO:0000049 ... P80377 30733327
    513769 6nd5:1n (2.6) BS01 rna ? GO:0003735 ... P0DOY6 30733327
    513770 6nd5:1n (2.6) BS02 MG ? GO:0003735 ... P0DOY6 30733327
    513771 6nd5:1n (2.6) BS03 ZN ? GO:0003735 ... P0DOY6 30733327
    513772 6nd5:1o (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 30733327
    513773 6nd5:1o (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 30733327
    513774 6nd5:1p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 30733327
    513775 6nd5:1q (2.6) BS01 rna ? GO:0003735 ... P0DOY7 30733327
    513776 6nd5:1r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 30733327
    513777 6nd5:1s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 30733327
    513778 6nd5:1t (2.6) BS01 rna ? GO:0003723 ... P80380 30733327
    513779 6nd5:1t (2.6) BS02 MG ? GO:0003723 ... P80380 30733327
    513780 6nd5:20 (2.6) BS01 rna ? GO:0003735 ... P60493 30733327
    513781 6nd5:20 (2.6) BS02 rna ? GO:0003735 ... P60493 30733327
    513782 6nd5:20 (2.6) BS03 rna ? GO:0003735 ... P60493 30733327
    513783 6nd5:21 (2.6) BS01 rna ? GO:0003735 ... P60494 30733327
    513784 6nd5:21 (2.6) BS02 rna ? GO:0003735 ... P60494 30733327
    513785 6nd5:21 (2.6) BS03 MG ? GO:0003735 ... P60494 30733327
    513786 6nd5:22 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 30733327
    513787 6nd5:23 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 30733327
    513788 6nd5:23 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 30733327
    513789 6nd5:23 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 30733327
    513790 6nd5:24 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 30733327
    513791 6nd5:24 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 30733327
    513792 6nd5:25 (2.6) BS01 rna ? GO:0003735 ... P80339 30733327
    513793 6nd5:25 (2.6) BS02 ZN ? GO:0003735 ... P80339 30733327
    513794 6nd5:26 (2.6) BS01 rna ? GO:0000049 ... P35871 30733327
    513795 6nd5:26 (2.6) BS02 ZN ? GO:0000049 ... P35871 30733327
    513796 6nd5:27 (2.6) BS01 rna ? GO:0003735 ... P80340 30733327
    513797 6nd5:28 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 30733327
    513798 6nd5:29 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 30733327
    513799 6nd5:29 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 30733327
    513800 6nd5:2D (2.6) BS01 rna ? GO:0002181 ... P60405 30733327

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).