SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    513801 6nd5:2D (2.6) BS02 rna ? GO:0002181 ... P60405 30733327
    513802 6nd5:2D (2.6) BS03 MG ? GO:0002181 ... P60405 30733327
    513803 6nd5:2D (2.6) BS04 MG ? GO:0002181 ... P60405 30733327
    513804 6nd5:2D (2.6) BS05 MG ? GO:0002181 ... P60405 30733327
    513805 6nd5:2D (2.6) BS06 MG ? GO:0002181 ... P60405 30733327
    513806 6nd5:2D (2.6) BS07 MG ? GO:0002181 ... P60405 30733327
    513807 6nd5:2D (2.6) BS08 MG ? GO:0002181 ... P60405 30733327
    513808 6nd5:2E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 30733327
    513809 6nd5:2E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 30733327
    513810 6nd5:2F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 30733327
    513811 6nd5:2F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 30733327
    513812 6nd5:2F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 30733327
    513813 6nd5:2F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 30733327
    513814 6nd5:2G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 30733327
    513815 6nd5:2G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 30733327
    513816 6nd5:2G (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 30733327
    513817 6nd5:2H (2.6) BS01 rna ? GO:0002181 ... P0DOY8 30733327
    513818 6nd5:2I (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 30733327
    513819 6nd5:2N (2.6) BS01 rna ? GO:0003729 ... P60488 30733327
    513820 6nd5:2O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 30733327
    513821 6nd5:2O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 30733327
    513822 6nd5:2P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 30733327
    513823 6nd5:2Q (2.6) BS01 rna ? GO:0000049 ... P60489 30733327
    513824 6nd5:2Q (2.6) BS02 rna ? GO:0000049 ... P60489 30733327
    513825 6nd5:2Q (2.6) BS03 rna ? GO:0000049 ... P60489 30733327
    513826 6nd5:2Q (2.6) BS04 MG ? GO:0000049 ... P60489 30733327
    513827 6nd5:2Q (2.6) BS05 MG ? GO:0000049 ... P60489 30733327
    513828 6nd5:2Q (2.6) BS06 MG ? GO:0000049 ... P60489 30733327
    513829 6nd5:2R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 30733327
    513830 6nd5:2S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 30733327
    513831 6nd5:2S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 30733327
    513832 6nd5:2T (2.6) BS01 rna ? GO:0003735 ... P60490 30733327
    513833 6nd5:2T (2.6) BS02 rna ? GO:0003735 ... P60490 30733327
    513834 6nd5:2U (2.6) BS01 rna ? GO:0000027 ... P60491 30733327
    513835 6nd5:2U (2.6) BS02 MG ? GO:0000027 ... P60491 30733327
    513836 6nd5:2U (2.6) BS03 MG ? GO:0000027 ... P60491 30733327
    513837 6nd5:2U (2.6) BS04 MG ? GO:0000027 ... P60491 30733327
    513838 6nd5:2V (2.6) BS01 rna ? GO:0003723 ... P60492 30733327
    513839 6nd5:2V (2.6) BS02 MG ? GO:0003723 ... P60492 30733327
    513840 6nd5:2V (2.6) BS03 MG ? GO:0003723 ... P60492 30733327
    513841 6nd5:2W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 30733327
    513842 6nd5:2W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 30733327
    513843 6nd5:2X (2.6) BS01 rna ? GO:0003735 ... Q5SHP0 30733327
    513844 6nd5:2X (2.6) BS02 MG ? GO:0003735 ... Q5SHP0 30733327
    513845 6nd5:2Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 30733327
    513846 6nd5:2Y (2.6) BS02 ZN ? GO:0003723 ... Q5SHP9 30733327
    513847 6nd5:2Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 30733327
    513848 6nd5:2Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 30733327
    513849 6nd5:2Z (2.6) BS03 MG ? GO:0003723 ... Q5SHZ1 30733327
    513850 6nd5:2b (2.6) BS01 rna ? GO:0003735 ... P80371 30733327
    513851 6nd5:2c (2.6) BS01 rna ? GO:0003676 ... P80372 30733327
    513852 6nd5:2d (2.6) BS01 rna ? GO:0003723 ... P80373 30733327
    513853 6nd5:2d (2.6) BS02 SF4 ? GO:0003723 ... P80373 30733327
    513854 6nd5:2e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 30733327
    513855 6nd5:2e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 30733327
    513856 6nd5:2f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 30733327
    513857 6nd5:2f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 30733327
    513858 6nd5:2g (2.6) BS01 rna ? GO:0000049 ... P17291 30733327
    513859 6nd5:2g (2.6) BS02 rna ? GO:0000049 ... P17291 30733327
    513860 6nd5:2h (2.6) BS01 rna ? GO:0003735 ... P0DOY9 30733327
    513861 6nd5:2i (2.6) BS01 rna ? GO:0000049 ... P80374 30733327
    513862 6nd5:2i (2.6) BS02 rna ? GO:0000049 ... P80374 30733327
    513863 6nd5:2j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 30733327
    513864 6nd5:2k (2.6) BS01 rna ? GO:0003735 ... P80376 30733327
    513865 6nd5:2k (2.6) BS02 MG ? GO:0003735 ... P80376 30733327
    513866 6nd5:2l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 30733327
    513867 6nd5:2l (2.6) BS02 rna ? GO:0000049 ... Q5SHN3 30733327
    513868 6nd5:2l (2.6) BS03 MG ? GO:0000049 ... Q5SHN3 30733327
    513869 6nd5:2l (2.6) BS04 MG ? GO:0000049 ... Q5SHN3 30733327
    513870 6nd5:2m (2.6) BS01 rna ? GO:0000049 ... P80377 30733327
    513871 6nd5:2m (2.6) BS02 rna ? GO:0000049 ... P80377 30733327
    513872 6nd5:2n (2.6) BS01 rna ? GO:0003735 ... P0DOY6 30733327
    513873 6nd5:2n (2.6) BS02 ZN ? GO:0003735 ... P0DOY6 30733327
    513874 6nd5:2o (2.6) BS01 rna ? GO:0003735 ... Q5SJ76 30733327
    513875 6nd5:2o (2.6) BS02 rna ? GO:0003735 ... Q5SJ76 30733327
    513876 6nd5:2p (2.6) BS01 rna ? GO:0003735 ... Q5SJH3 30733327
    513877 6nd5:2q (2.6) BS01 rna ? GO:0003735 ... P0DOY7 30733327
    513878 6nd5:2q (2.6) BS02 MG ? GO:0003735 ... P0DOY7 30733327
    513879 6nd5:2q (2.6) BS03 MG ? GO:0003735 ... P0DOY7 30733327
    513880 6nd5:2r (2.6) BS01 rna ? GO:0003735 ... Q5SLQ0 30733327
    513881 6nd5:2r (2.6) BS02 MG ? GO:0003735 ... Q5SLQ0 30733327
    513882 6nd5:2s (2.6) BS01 rna ? GO:0000028 ... Q5SHP2 30733327
    513883 6nd5:2t (2.6) BS01 rna ? GO:0003723 ... P80380 30733327
    513884 6nd5:2t (2.6) BS02 MG ? GO:0003723 ... P80380 30733327
    513885 6nd6:10 (2.85) BS01 rna ? GO:0003735 ... P60493 30733327
    513886 6nd6:10 (2.85) BS02 rna ? GO:0003735 ... P60493 30733327
    513887 6nd6:10 (2.85) BS03 MG ? GO:0003735 ... P60493 30733327
    513888 6nd6:10 (2.85) BS04 MG ? GO:0003735 ... P60493 30733327
    513889 6nd6:11 (2.85) BS01 rna ? GO:0003735 ... P60494 30733327
    513890 6nd6:12 (2.85) BS01 rna ? GO:0003735 ... Q5SHP6 30733327
    513891 6nd6:12 (2.85) BS02 MG ? GO:0003735 ... Q5SHP6 30733327
    513892 6nd6:13 (2.85) BS01 rna ? GO:0003735 ... Q5SHQ6 30733327
    513893 6nd6:13 (2.85) BS02 rna ? GO:0003735 ... Q5SHQ6 30733327
    513894 6nd6:13 (2.85) BS03 MG ? GO:0003735 ... Q5SHQ6 30733327
    513895 6nd6:13 (2.85) BS04 MG ? GO:0003735 ... Q5SHQ6 30733327
    513896 6nd6:14 (2.85) BS01 rna ? GO:0003735 ... Q5SJE1 30733327
    513897 6nd6:14 (2.85) BS02 ZN ? GO:0003735 ... Q5SJE1 30733327
    513898 6nd6:15 (2.85) BS01 rna ? GO:0003735 ... P80339 30733327
    513899 6nd6:15 (2.85) BS02 MG ? GO:0003735 ... P80339 30733327
    513900 6nd6:15 (2.85) BS03 MG ? GO:0003735 ... P80339 30733327
    513901 6nd6:15 (2.85) BS04 ZN ? GO:0003735 ... P80339 30733327
    513902 6nd6:16 (2.85) BS01 rna ? GO:0000049 ... P35871 30733327
    513903 6nd6:16 (2.85) BS02 MG ? GO:0000049 ... P35871 30733327
    513904 6nd6:16 (2.85) BS03 MG ? GO:0000049 ... P35871 30733327
    513905 6nd6:16 (2.85) BS04 ZN ? GO:0000049 ... P35871 30733327
    513906 6nd6:17 (2.85) BS01 rna ? GO:0003735 ... P80340 30733327
    513907 6nd6:18 (2.85) BS01 rna ? GO:0003735 ... Q5SKU1 30733327
    513908 6nd6:18 (2.85) BS02 MG ? GO:0003735 ... Q5SKU1 30733327
    513909 6nd6:18 (2.85) BS03 MG ? GO:0003735 ... Q5SKU1 30733327
    513910 6nd6:18 (2.85) BS04 MG ? GO:0003735 ... Q5SKU1 30733327
    513911 6nd6:19 (2.85) BS01 rna ? GO:0003735 ... Q5SHR2 30733327
    513912 6nd6:19 (2.85) BS02 ZN ? GO:0003735 ... Q5SHR2 30733327
    513913 6nd6:1D (2.85) BS01 rna ? GO:0002181 ... P60405 30733327
    513914 6nd6:1D (2.85) BS02 rna ? GO:0002181 ... P60405 30733327
    513915 6nd6:1D (2.85) BS03 MG ? GO:0002181 ... P60405 30733327
    513916 6nd6:1D (2.85) BS04 MG ? GO:0002181 ... P60405 30733327
    513917 6nd6:1D (2.85) BS05 MG ? GO:0002181 ... P60405 30733327
    513918 6nd6:1D (2.85) BS06 MG ? GO:0002181 ... P60405 30733327
    513919 6nd6:1D (2.85) BS07 MG ? GO:0002181 ... P60405 30733327
    513920 6nd6:1D (2.85) BS08 MG ? GO:0002181 ... P60405 30733327
    513921 6nd6:1D (2.85) BS09 MG ? GO:0002181 ... P60405 30733327
    513922 6nd6:1D (2.85) BS10 MG ? GO:0002181 ... P60405 30733327
    513923 6nd6:1D (2.85) BS11 MG ? GO:0002181 ... P60405 30733327
    513924 6nd6:1D (2.85) BS12 MG ? GO:0002181 ... P60405 30733327
    513925 6nd6:1E (2.85) BS01 rna ? GO:0003735 ... Q5SHN8 30733327
    513926 6nd6:1E (2.85) BS02 MG ? GO:0003735 ... Q5SHN8 30733327
    513927 6nd6:1E (2.85) BS03 MG ? GO:0003735 ... Q5SHN8 30733327
    513928 6nd6:1E (2.85) BS04 MG ? GO:0003735 ... Q5SHN8 30733327
    513929 6nd6:1F (2.85) BS01 rna ? GO:0003735 ... Q5SHN9 30733327
    513930 6nd6:1F (2.85) BS02 MG ? GO:0003735 ... Q5SHN9 30733327
    513931 6nd6:1F (2.85) BS03 MG ? GO:0003735 ... Q5SHN9 30733327
    513932 6nd6:1F (2.85) BS04 MG ? GO:0003735 ... Q5SHN9 30733327
    513933 6nd6:1F (2.85) BS05 MG ? GO:0003735 ... Q5SHN9 30733327
    513934 6nd6:1F (2.85) BS06 MG ? GO:0003735 ... Q5SHN9 30733327
    513935 6nd6:1G (2.85) BS01 rna ? GO:0000049 ... Q5SHQ0 30733327
    513936 6nd6:1G (2.85) BS02 rna ? GO:0000049 ... Q5SHQ0 30733327
    513937 6nd6:1G (2.85) BS03 rna ? GO:0000049 ... Q5SHQ0 30733327
    513938 6nd6:1G (2.85) BS04 MG ? GO:0000049 ... Q5SHQ0 30733327
    513939 6nd6:1H (2.85) BS01 rna ? GO:0002181 ... P0DOY8 30733327
    513940 6nd6:1I (2.85) BS01 rna ? GO:0003735 ... Q5SLQ1 30733327
    513941 6nd6:1I (2.85) BS02 MG ? GO:0003735 ... Q5SLQ1 30733327
    513942 6nd6:1N (2.85) BS01 rna ? GO:0003729 ... P60488 30733327
    513943 6nd6:1N (2.85) BS02 MG ? GO:0003729 ... P60488 30733327
    513944 6nd6:1N (2.85) BS03 MG ? GO:0003729 ... P60488 30733327
    513945 6nd6:1N (2.85) BS04 MG ? GO:0003729 ... P60488 30733327
    513946 6nd6:1O (2.85) BS01 rna ? GO:0003735 ... Q5SHP8 30733327
    513947 6nd6:1O (2.85) BS02 rna ? GO:0003735 ... Q5SHP8 30733327
    513948 6nd6:1P (2.85) BS01 rna ? GO:0003735 ... Q5SHQ7 30733327
    513949 6nd6:1P (2.85) BS02 MG ? GO:0003735 ... Q5SHQ7 30733327
    513950 6nd6:1P (2.85) BS03 MG ? GO:0003735 ... Q5SHQ7 30733327
    513951 6nd6:1P (2.85) BS04 MG ? GO:0003735 ... Q5SHQ7 30733327
    513952 6nd6:1P (2.85) BS05 MG ? GO:0003735 ... Q5SHQ7 30733327
    513953 6nd6:1P (2.85) BS06 MG ? GO:0003735 ... Q5SHQ7 30733327
    513954 6nd6:1Q (2.85) BS01 rna ? GO:0000049 ... P60489 30733327
    513955 6nd6:1Q (2.85) BS02 rna ? GO:0000049 ... P60489 30733327
    513956 6nd6:1Q (2.85) BS03 rna ? GO:0000049 ... P60489 30733327
    513957 6nd6:1Q (2.85) BS04 MG ? GO:0000049 ... P60489 30733327
    513958 6nd6:1Q (2.85) BS05 MG ? GO:0000049 ... P60489 30733327
    513959 6nd6:1Q (2.85) BS06 MG ? GO:0000049 ... P60489 30733327
    513960 6nd6:1Q (2.85) BS07 MG ? GO:0000049 ... P60489 30733327
    513961 6nd6:1R (2.85) BS01 rna ? GO:0003735 ... Q9Z9H5 30733327
    513962 6nd6:1R (2.85) BS02 MG ? GO:0003735 ... Q9Z9H5 30733327
    513963 6nd6:1S (2.85) BS01 rna ? GO:0003735 ... Q5SHQ4 30733327
    513964 6nd6:1S (2.85) BS02 rna ? GO:0003735 ... Q5SHQ4 30733327
    513965 6nd6:1S (2.85) BS03 MG ? GO:0003735 ... Q5SHQ4 30733327
    513966 6nd6:1T (2.85) BS01 rna ? GO:0003735 ... P60490 30733327
    513967 6nd6:1T (2.85) BS02 rna ? GO:0003735 ... P60490 30733327
    513968 6nd6:1U (2.85) BS01 rna ? GO:0000027 ... P60491 30733327
    513969 6nd6:1U (2.85) BS02 MG ? GO:0000027 ... P60491 30733327
    513970 6nd6:1U (2.85) BS03 MG ? GO:0000027 ... P60491 30733327
    513971 6nd6:1U (2.85) BS04 MG ? GO:0000027 ... P60491 30733327
    513972 6nd6:1U (2.85) BS05 MG ? GO:0000027 ... P60491 30733327
    513973 6nd6:1U (2.85) BS06 MG ? GO:0000027 ... P60491 30733327
    513974 6nd6:1U (2.85) BS07 MG ? GO:0000027 ... P60491 30733327
    513975 6nd6:1V (2.85) BS01 rna ? GO:0003723 ... P60492 30733327
    513976 6nd6:1V (2.85) BS02 MG ? GO:0003723 ... P60492 30733327
    513977 6nd6:1V (2.85) BS03 MG ? GO:0003723 ... P60492 30733327
    513978 6nd6:1V (2.85) BS04 MG ? GO:0003723 ... P60492 30733327
    513979 6nd6:1V (2.85) BS05 MG ? GO:0003723 ... P60492 30733327
    513980 6nd6:1V (2.85) BS06 MG ? GO:0003723 ... P60492 30733327
    513981 6nd6:1W (2.85) BS01 rna ? GO:0003735 ... Q5SHP3 30733327
    513982 6nd6:1W (2.85) BS02 MG ? GO:0003735 ... Q5SHP3 30733327
    513983 6nd6:1W (2.85) BS03 MG ? GO:0003735 ... Q5SHP3 30733327
    513984 6nd6:1W (2.85) BS04 MG ? GO:0003735 ... Q5SHP3 30733327
    513985 6nd6:1W (2.85) BS05 MG ? GO:0003735 ... Q5SHP3 30733327
    513986 6nd6:1X (2.85) BS01 rna ? GO:0003735 ... Q5SHP0 30733327
    513987 6nd6:1X (2.85) BS02 MG ? GO:0003735 ... Q5SHP0 30733327
    513988 6nd6:1Y (2.85) BS01 rna ? GO:0003723 ... Q5SHP9 30733327
    513989 6nd6:1Y (2.85) BS02 MG ? GO:0003723 ... Q5SHP9 30733327
    513990 6nd6:1Y (2.85) BS03 ZN ? GO:0003723 ... Q5SHP9 30733327
    513991 6nd6:1Z (2.85) BS01 rna ? GO:0003723 ... Q5SHZ1 30733327
    513992 6nd6:1b (2.85) BS01 rna ? GO:0003735 ... P80371 30733327
    513993 6nd6:1c (2.85) BS01 rna ? GO:0003676 ... P80372 30733327
    513994 6nd6:1d (2.85) BS01 rna ? GO:0003723 ... P80373 30733327
    513995 6nd6:1d (2.85) BS02 SF4 ? GO:0003723 ... P80373 30733327
    513996 6nd6:1e (2.85) BS01 rna ? GO:0003723 ... Q5SHQ5 30733327
    513997 6nd6:1e (2.85) BS02 MG ? GO:0003723 ... Q5SHQ5 30733327
    513998 6nd6:1e (2.85) BS03 MG ? GO:0003723 ... Q5SHQ5 30733327
    513999 6nd6:1f (2.85) BS01 rna ? GO:0003735 ... Q5SLP8 30733327
    514000 6nd6:1f (2.85) BS02 MG ? GO:0003735 ... Q5SLP8 30733327

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).