SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    514001 6nd6:1g (2.85) BS01 rna ? GO:0000049 ... P17291 30733327
    514002 6nd6:1g (2.85) BS02 rna ? GO:0000049 ... P17291 30733327
    514003 6nd6:1h (2.85) BS01 rna ? GO:0003735 ... P0DOY9 30733327
    514004 6nd6:1i (2.85) BS01 rna ? GO:0000049 ... P80374 30733327
    514005 6nd6:1j (2.85) BS01 rna ? GO:0000049 ... Q5SHN7 30733327
    514006 6nd6:1k (2.85) BS01 rna ? GO:0003735 ... P80376 30733327
    514007 6nd6:1k (2.85) BS02 MG ? GO:0003735 ... P80376 30733327
    514008 6nd6:1l (2.85) BS01 rna ? GO:0000049 ... Q5SHN3 30733327
    514009 6nd6:1m (2.85) BS01 rna ? GO:0000049 ... P80377 30733327
    514010 6nd6:1m (2.85) BS02 MG ? GO:0000049 ... P80377 30733327
    514011 6nd6:1n (2.85) BS01 rna ? GO:0003735 ... P0DOY6 30733327
    514012 6nd6:1n (2.85) BS02 MG ? GO:0003735 ... P0DOY6 30733327
    514013 6nd6:1n (2.85) BS03 ZN ? GO:0003735 ... P0DOY6 30733327
    514014 6nd6:1o (2.85) BS01 rna ? GO:0003735 ... Q5SJ76 30733327
    514015 6nd6:1o (2.85) BS02 rna ? GO:0003735 ... Q5SJ76 30733327
    514016 6nd6:1p (2.85) BS01 rna ? GO:0003735 ... Q5SJH3 30733327
    514017 6nd6:1q (2.85) BS01 rna ? GO:0003735 ... P0DOY7 30733327
    514018 6nd6:1r (2.85) BS01 rna ? GO:0003735 ... Q5SLQ0 30733327
    514019 6nd6:1s (2.85) BS01 rna ? GO:0000028 ... Q5SHP2 30733327
    514020 6nd6:1t (2.85) BS01 rna ? GO:0003723 ... P80380 30733327
    514021 6nd6:1t (2.85) BS02 MG ? GO:0003723 ... P80380 30733327
    514022 6nd6:20 (2.85) BS01 rna ? GO:0003735 ... P60493 30733327
    514023 6nd6:20 (2.85) BS02 rna ? GO:0003735 ... P60493 30733327
    514024 6nd6:20 (2.85) BS03 MG ? GO:0003735 ... P60493 30733327
    514025 6nd6:21 (2.85) BS01 rna ? GO:0003735 ... P60494 30733327
    514026 6nd6:22 (2.85) BS01 rna ? GO:0003735 ... Q5SHP6 30733327
    514027 6nd6:23 (2.85) BS01 rna ? GO:0003735 ... Q5SHQ6 30733327
    514028 6nd6:23 (2.85) BS02 rna ? GO:0003735 ... Q5SHQ6 30733327
    514029 6nd6:23 (2.85) BS03 MG ? GO:0003735 ... Q5SHQ6 30733327
    514030 6nd6:24 (2.85) BS01 rna ? GO:0003735 ... Q5SJE1 30733327
    514031 6nd6:24 (2.85) BS02 ZN ? GO:0003735 ... Q5SJE1 30733327
    514032 6nd6:25 (2.85) BS01 rna ? GO:0003735 ... P80339 30733327
    514033 6nd6:25 (2.85) BS02 ZN ? GO:0003735 ... P80339 30733327
    514034 6nd6:26 (2.85) BS01 rna ? GO:0000049 ... P35871 30733327
    514035 6nd6:26 (2.85) BS02 MG ? GO:0000049 ... P35871 30733327
    514036 6nd6:26 (2.85) BS03 ZN ? GO:0000049 ... P35871 30733327
    514037 6nd6:27 (2.85) BS01 rna ? GO:0003735 ... P80340 30733327
    514038 6nd6:27 (2.85) BS02 MG ? GO:0003735 ... P80340 30733327
    514039 6nd6:28 (2.85) BS01 rna ? GO:0003735 ... Q5SKU1 30733327
    514040 6nd6:29 (2.85) BS01 rna ? GO:0003735 ... Q5SHR2 30733327
    514041 6nd6:29 (2.85) BS02 ZN ? GO:0003735 ... Q5SHR2 30733327
    514042 6nd6:2D (2.85) BS01 rna ? GO:0002181 ... P60405 30733327
    514043 6nd6:2D (2.85) BS02 rna ? GO:0002181 ... P60405 30733327
    514044 6nd6:2D (2.85) BS03 MG ? GO:0002181 ... P60405 30733327
    514045 6nd6:2D (2.85) BS04 MG ? GO:0002181 ... P60405 30733327
    514046 6nd6:2E (2.85) BS01 rna ? GO:0003735 ... Q5SHN8 30733327
    514047 6nd6:2E (2.85) BS02 MG ? GO:0003735 ... Q5SHN8 30733327
    514048 6nd6:2F (2.85) BS01 rna ? GO:0003735 ... Q5SHN9 30733327
    514049 6nd6:2F (2.85) BS02 MG ? GO:0003735 ... Q5SHN9 30733327
    514050 6nd6:2F (2.85) BS03 MG ? GO:0003735 ... Q5SHN9 30733327
    514051 6nd6:2G (2.85) BS01 rna ? GO:0000049 ... Q5SHQ0 30733327
    514052 6nd6:2G (2.85) BS02 rna ? GO:0000049 ... Q5SHQ0 30733327
    514053 6nd6:2G (2.85) BS03 rna ? GO:0000049 ... Q5SHQ0 30733327
    514054 6nd6:2G (2.85) BS04 MG ? GO:0000049 ... Q5SHQ0 30733327
    514055 6nd6:2H (2.85) BS01 rna ? GO:0002181 ... P0DOY8 30733327
    514056 6nd6:2I (2.85) BS01 rna ? GO:0003735 ... Q5SLQ1 30733327
    514057 6nd6:2N (2.85) BS01 rna ? GO:0003729 ... P60488 30733327
    514058 6nd6:2O (2.85) BS01 rna ? GO:0003735 ... Q5SHP8 30733327
    514059 6nd6:2O (2.85) BS02 rna ? GO:0003735 ... Q5SHP8 30733327
    514060 6nd6:2P (2.85) BS01 rna ? GO:0003735 ... Q5SHQ7 30733327
    514061 6nd6:2Q (2.85) BS01 rna ? GO:0000049 ... P60489 30733327
    514062 6nd6:2Q (2.85) BS02 rna ? GO:0000049 ... P60489 30733327
    514063 6nd6:2Q (2.85) BS03 rna ? GO:0000049 ... P60489 30733327
    514064 6nd6:2Q (2.85) BS04 MG ? GO:0000049 ... P60489 30733327
    514065 6nd6:2Q (2.85) BS05 MG ? GO:0000049 ... P60489 30733327
    514066 6nd6:2Q (2.85) BS06 MG ? GO:0000049 ... P60489 30733327
    514067 6nd6:2R (2.85) BS01 rna ? GO:0003735 ... Q9Z9H5 30733327
    514068 6nd6:2S (2.85) BS01 rna ? GO:0003735 ... Q5SHQ4 30733327
    514069 6nd6:2S (2.85) BS02 rna ? GO:0003735 ... Q5SHQ4 30733327
    514070 6nd6:2T (2.85) BS01 rna ? GO:0003735 ... P60490 30733327
    514071 6nd6:2T (2.85) BS02 rna ? GO:0003735 ... P60490 30733327
    514072 6nd6:2U (2.85) BS01 rna ? GO:0000027 ... P60491 30733327
    514073 6nd6:2U (2.85) BS02 MG ? GO:0000027 ... P60491 30733327
    514074 6nd6:2U (2.85) BS03 MG ? GO:0000027 ... P60491 30733327
    514075 6nd6:2V (2.85) BS01 rna ? GO:0003723 ... P60492 30733327
    514076 6nd6:2V (2.85) BS02 MG ? GO:0003723 ... P60492 30733327
    514077 6nd6:2W (2.85) BS01 rna ? GO:0003735 ... Q5SHP3 30733327
    514078 6nd6:2W (2.85) BS02 MG ? GO:0003735 ... Q5SHP3 30733327
    514079 6nd6:2W (2.85) BS03 MG ? GO:0003735 ... Q5SHP3 30733327
    514080 6nd6:2X (2.85) BS01 rna ? GO:0003735 ... Q5SHP0 30733327
    514081 6nd6:2Y (2.85) BS01 rna ? GO:0003723 ... Q5SHP9 30733327
    514082 6nd6:2Y (2.85) BS02 ZN ? GO:0003723 ... Q5SHP9 30733327
    514083 6nd6:2Z (2.85) BS01 rna ? GO:0003723 ... Q5SHZ1 30733327
    514084 6nd6:2Z (2.85) BS02 MG ? GO:0003723 ... Q5SHZ1 30733327
    514085 6nd6:2b (2.85) BS01 rna ? GO:0003735 ... P80371 30733327
    514086 6nd6:2c (2.85) BS01 rna ? GO:0003676 ... P80372 30733327
    514087 6nd6:2d (2.85) BS01 rna ? GO:0003723 ... P80373 30733327
    514088 6nd6:2d (2.85) BS02 MG ? GO:0003723 ... P80373 30733327
    514089 6nd6:2d (2.85) BS03 SF4 ? GO:0003723 ... P80373 30733327
    514090 6nd6:2e (2.85) BS01 rna ? GO:0003723 ... Q5SHQ5 30733327
    514091 6nd6:2e (2.85) BS02 MG ? GO:0003723 ... Q5SHQ5 30733327
    514092 6nd6:2f (2.85) BS01 rna ? GO:0003735 ... Q5SLP8 30733327
    514093 6nd6:2f (2.85) BS02 MG ? GO:0003735 ... Q5SLP8 30733327
    514094 6nd6:2g (2.85) BS01 rna ? GO:0000049 ... P17291 30733327
    514095 6nd6:2g (2.85) BS02 rna ? GO:0000049 ... P17291 30733327
    514096 6nd6:2h (2.85) BS01 rna ? GO:0003735 ... P0DOY9 30733327
    514097 6nd6:2i (2.85) BS01 rna ? GO:0000049 ... P80374 30733327
    514098 6nd6:2i (2.85) BS02 rna ? GO:0000049 ... P80374 30733327
    514099 6nd6:2j (2.85) BS01 rna ? GO:0000049 ... Q5SHN7 30733327
    514100 6nd6:2k (2.85) BS01 rna ? GO:0003735 ... P80376 30733327
    514101 6nd6:2k (2.85) BS02 MG ? GO:0003735 ... P80376 30733327
    514102 6nd6:2l (2.85) BS01 rna ? GO:0000049 ... Q5SHN3 30733327
    514103 6nd6:2l (2.85) BS02 MG ? GO:0000049 ... Q5SHN3 30733327
    514104 6nd6:2m (2.85) BS01 rna ? GO:0000049 ... P80377 30733327
    514105 6nd6:2m (2.85) BS02 rna ? GO:0000049 ... P80377 30733327
    514106 6nd6:2n (2.85) BS01 rna ? GO:0003735 ... P0DOY6 30733327
    514107 6nd6:2n (2.85) BS02 ZN ? GO:0003735 ... P0DOY6 30733327
    514108 6nd6:2o (2.85) BS01 rna ? GO:0003735 ... Q5SJ76 30733327
    514109 6nd6:2o (2.85) BS02 rna ? GO:0003735 ... Q5SJ76 30733327
    514110 6nd6:2p (2.85) BS01 rna ? GO:0003735 ... Q5SJH3 30733327
    514111 6nd6:2q (2.85) BS01 rna ? GO:0003735 ... P0DOY7 30733327
    514112 6nd6:2q (2.85) BS02 MG ? GO:0003735 ... P0DOY7 30733327
    514113 6nd6:2r (2.85) BS01 rna ? GO:0003735 ... Q5SLQ0 30733327
    514114 6nd6:2s (2.85) BS01 rna ? GO:0000028 ... Q5SHP2 30733327
    514115 6nd6:2t (2.85) BS01 rna ? GO:0003723 ... P80380 30733327
    514116 6nd6:2t (2.85) BS02 MG ? GO:0003723 ... P80380 30733327
    514117 6nd7:A (1.36) BS01 NDP ? GO:0000166 ... A0A3B6UEU0 N/A
    514118 6nd7:A (1.36) BS02 KJG ? GO:0000166 ... A0A3B6UEU0 N/A
    514119 6nd7:B (1.36) BS01 NDP ? GO:0000166 ... A0A3B6UEU0 N/A
    514120 6nd7:B (1.36) BS02 KJG ? GO:0000166 ... A0A3B6UEU0 N/A
    514121 6nd9:C (2.9) BS01 CA ? N/A P17301 N/A
    514122 6nd9:F (2.9) BS01 CA ? N/A P17301 N/A
    514123 6nd9:I (2.9) BS01 CA ? N/A P17301 N/A
    514124 6nd9:L (2.9) BS01 CA ? N/A P17301 N/A
    514125 6nd9:O (2.9) BS01 CA ? N/A P17301 N/A
    514126 6nd9:R (2.9) BS01 CA ? N/A P17301 N/A
    514127 6ndb:C (3.2) BS01 CO ? N/A P17301 N/A
    514128 6ndb:F (3.2) BS01 CO ? N/A P17301 N/A
    514129 6ndb:I (3.2) BS01 CO ? N/A P17301 N/A
    514130 6ndb:L (3.2) BS01 CO ? N/A P17301 N/A
    514131 6ndb:O (3.2) BS01 CO ? N/A P17301 N/A
    514132 6ndb:R (3.2) BS01 CO ? N/A P17301 N/A
    514133 6ndd:C (3.05) BS01 MN ? N/A P17301 N/A
    514134 6ndd:F (3.05) BS01 MN ? N/A P17301 N/A
    514135 6ndd:I (3.05) BS01 MN ? N/A P17301 N/A
    514136 6ndd:L (3.05) BS01 MN ? N/A P17301 N/A
    514137 6ndd:O (3.05) BS01 MN ? N/A P17301 N/A
    514138 6ndd:R (3.05) BS01 MN ? N/A P17301 N/A
    514139 6ndh:C (2.9) BS01 ZN ? N/A P17301 N/A
    514140 6ndh:L (2.9) BS01 ZN ? N/A P17301 N/A
    514141 6ndh:O (2.9) BS01 ZN ? N/A P17301 N/A
    514142 6ndh:R (2.9) BS01 ZN ? N/A P17301 N/A
    514143 6ndk:QB (3.64) BS01 rna ? GO:0003735 ... P80371 30782843
    514144 6ndk:QC (3.64) BS01 rna ? GO:0003676 ... P80372 30782843
    514145 6ndk:QC (3.64) BS02 MG ? GO:0003676 ... P80372 30782843
    514146 6ndk:QD (3.64) BS01 rna ? GO:0003723 ... P80373 30782843
    514147 6ndk:QD (3.64) BS02 SF4 ? GO:0003723 ... P80373 30782843
    514148 6ndk:QE (3.64) BS01 rna ? GO:0003723 ... Q5SHQ5 30782843
    514149 6ndk:QE (3.64) BS02 MG ? GO:0003723 ... Q5SHQ5 30782843
    514150 6ndk:QF (3.64) BS01 rna ? GO:0003735 ... Q5SLP8 30782843
    514151 6ndk:QG (3.64) BS01 rna ? GO:0000049 ... P17291 30782843
    514152 6ndk:QH (3.64) BS01 rna ? GO:0003735 ... P0DOY9 30782843
    514153 6ndk:QI (3.64) BS01 rna ? GO:0000049 ... P80374 30782843
    514154 6ndk:QJ (3.64) BS01 rna ? GO:0000049 ... Q5SHN7 30782843
    514155 6ndk:QJ (3.64) BS02 rna ? GO:0000049 ... Q5SHN7 30782843
    514156 6ndk:QJ (3.64) BS03 MG ? GO:0000049 ... Q5SHN7 30782843
    514157 6ndk:QK (3.64) BS01 rna ? GO:0003735 ... P80376 30782843
    514158 6ndk:QL (3.64) BS01 rna ? GO:0000049 ... Q5SHN3 30782843
    514159 6ndk:QM (3.64) BS01 rna ? GO:0000049 ... P80377 30782843
    514160 6ndk:QM (3.64) BS02 MG ? GO:0000049 ... P80377 30782843
    514161 6ndk:QN (3.64) BS01 rna ? GO:0003735 ... P0DOY6 30782843
    514162 6ndk:QN (3.64) BS02 ZN ? GO:0003735 ... P0DOY6 30782843
    514163 6ndk:QN (3.64) BS03 MG ? GO:0003735 ... P0DOY6 30782843
    514164 6ndk:QO (3.64) BS01 rna ? GO:0003735 ... Q5SJ76 30782843
    514165 6ndk:QO (3.64) BS02 rna ? GO:0003735 ... Q5SJ76 30782843
    514166 6ndk:QP (3.64) BS01 rna ? GO:0003735 ... Q5SJH3 30782843
    514167 6ndk:QQ (3.64) BS01 rna ? GO:0003735 ... P0DOY7 30782843
    514168 6ndk:QR (3.64) BS01 rna ? GO:0003735 ... Q5SLQ0 30782843
    514169 6ndk:QS (3.64) BS01 rna ? GO:0000028 ... Q5SHP2 30782843
    514170 6ndk:QT (3.64) BS01 rna ? GO:0003723 ... P80380 30782843
    514171 6ndk:R0 (3.64) BS01 rna ? GO:0003735 ... P60493 30782843
    514172 6ndk:R0 (3.64) BS02 rna ? GO:0003735 ... P60493 30782843
    514173 6ndk:R0 (3.64) BS03 rna ? GO:0003735 ... P60493 30782843
    514174 6ndk:R1 (3.64) BS01 rna ? GO:0003735 ... P60494 30782843
    514175 6ndk:R2 (3.64) BS01 rna ? GO:0003735 ... Q5SHP6 30782843
    514176 6ndk:R3 (3.64) BS01 rna ? GO:0003735 ... Q5SHQ6 30782843
    514177 6ndk:R3 (3.64) BS02 rna ? GO:0003735 ... Q5SHQ6 30782843
    514178 6ndk:R4 (3.64) BS01 rna ? GO:0003735 ... Q5SJE1 30782843
    514179 6ndk:R4 (3.64) BS02 rna ? GO:0003735 ... Q5SJE1 30782843
    514180 6ndk:R4 (3.64) BS03 ZN ? GO:0003735 ... Q5SJE1 30782843
    514181 6ndk:R5 (3.64) BS01 rna ? GO:0003735 ... P80339 30782843
    514182 6ndk:R6 (3.64) BS01 rna ? GO:0000049 ... P35871 30782843
    514183 6ndk:R7 (3.64) BS01 rna ? GO:0003735 ... P80340 30782843
    514184 6ndk:R8 (3.64) BS01 rna ? GO:0003735 ... Q5SKU1 30782843
    514185 6ndk:R9 (3.64) BS01 rna ? GO:0003735 ... Q5SHR2 30782843
    514186 6ndk:R9 (3.64) BS02 ZN ? GO:0003735 ... Q5SHR2 30782843
    514187 6ndk:RD (3.64) BS01 rna ? GO:0002181 ... P60405 30782843
    514188 6ndk:RD (3.64) BS02 rna ? GO:0002181 ... P60405 30782843
    514189 6ndk:RD (3.64) BS03 MG ? GO:0002181 ... P60405 30782843
    514190 6ndk:RD (3.64) BS04 MG ? GO:0002181 ... P60405 30782843
    514191 6ndk:RD (3.64) BS05 MG ? GO:0002181 ... P60405 30782843
    514192 6ndk:RE (3.64) BS01 rna ? GO:0003735 ... Q5SHN8 30782843
    514193 6ndk:RE (3.64) BS02 MG ? GO:0003735 ... Q5SHN8 30782843
    514194 6ndk:RF (3.64) BS01 rna ? GO:0003735 ... Q5SHN9 30782843
    514195 6ndk:RF (3.64) BS02 MG ? GO:0003735 ... Q5SHN9 30782843
    514196 6ndk:RF (3.64) BS03 MG ? GO:0003735 ... Q5SHN9 30782843
    514197 6ndk:RG (3.64) BS01 rna ? GO:0000049 ... Q5SHQ0 30782843
    514198 6ndk:RG (3.64) BS02 rna ? GO:0000049 ... Q5SHQ0 30782843
    514199 6ndk:RG (3.64) BS03 rna ? GO:0000049 ... Q5SHQ0 30782843
    514200 6ndk:RH (3.64) BS01 rna ? GO:0002181 ... P0DOY8 30782843

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).