SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    514201 6ndk:RI (3.64) BS01 rna ? GO:0003735 ... Q5SLQ1 30782843
    514202 6ndk:RN (3.64) BS01 rna ? GO:0003729 ... P60488 30782843
    514203 6ndk:RN (3.64) BS02 MG ? GO:0003729 ... P60488 30782843
    514204 6ndk:RO (3.64) BS01 rna ? GO:0003735 ... Q5SHP8 30782843
    514205 6ndk:RO (3.64) BS02 rna ? GO:0003735 ... Q5SHP8 30782843
    514206 6ndk:RP (3.64) BS01 rna ? GO:0003735 ... Q5SHQ7 30782843
    514207 6ndk:RP (3.64) BS02 MG ? GO:0003735 ... Q5SHQ7 30782843
    514208 6ndk:RQ (3.64) BS01 rna ? GO:0000049 ... P60489 30782843
    514209 6ndk:RQ (3.64) BS02 rna ? GO:0000049 ... P60489 30782843
    514210 6ndk:RQ (3.64) BS03 MG ? GO:0000049 ... P60489 30782843
    514211 6ndk:RR (3.64) BS01 rna ? GO:0003735 ... Q9Z9H5 30782843
    514212 6ndk:RS (3.64) BS01 rna ? GO:0003735 ... Q5SHQ4 30782843
    514213 6ndk:RS (3.64) BS02 rna ? GO:0003735 ... Q5SHQ4 30782843
    514214 6ndk:RT (3.64) BS01 rna ? GO:0003735 ... P60490 30782843
    514215 6ndk:RT (3.64) BS02 rna ? GO:0003735 ... P60490 30782843
    514216 6ndk:RU (3.64) BS01 rna ? GO:0000027 ... P60491 30782843
    514217 6ndk:RV (3.64) BS01 rna ? GO:0003723 ... P60492 30782843
    514218 6ndk:RW (3.64) BS01 rna ? GO:0003735 ... Q5SHP3 30782843
    514219 6ndk:RX (3.64) BS01 rna ? GO:0003735 ... Q5SHP0 30782843
    514220 6ndk:RY (3.64) BS01 rna ? GO:0003723 ... Q5SHP9 30782843
    514221 6ndk:RZ (3.64) BS01 rna ? GO:0003723 ... Q5SHZ1 30782843
    514222 6ndk:RZ (3.64) BS02 rna ? GO:0003723 ... Q5SHZ1 30782843
    514223 6ndk:XB (3.64) BS01 rna ? GO:0003735 ... P80371 30782843
    514224 6ndk:XC (3.64) BS01 rna ? GO:0003676 ... P80372 30782843
    514225 6ndk:XD (3.64) BS01 rna ? GO:0003723 ... P80373 30782843
    514226 6ndk:XD (3.64) BS02 SF4 ? GO:0003723 ... P80373 30782843
    514227 6ndk:XE (3.64) BS01 rna ? GO:0003723 ... Q5SHQ5 30782843
    514228 6ndk:XF (3.64) BS01 rna ? GO:0003735 ... Q5SLP8 30782843
    514229 6ndk:XG (3.64) BS01 rna ? GO:0000049 ... P17291 30782843
    514230 6ndk:XG (3.64) BS02 rna ? GO:0000049 ... P17291 30782843
    514231 6ndk:XH (3.64) BS01 rna ? GO:0003735 ... P0DOY9 30782843
    514232 6ndk:XI (3.64) BS01 rna ? GO:0000049 ... P80374 30782843
    514233 6ndk:XJ (3.64) BS01 rna ? GO:0000049 ... Q5SHN7 30782843
    514234 6ndk:XK (3.64) BS01 rna ? GO:0003735 ... P80376 30782843
    514235 6ndk:XL (3.64) BS01 rna ? GO:0000049 ... Q5SHN3 30782843
    514236 6ndk:XM (3.64) BS01 rna ? GO:0000049 ... P80377 30782843
    514237 6ndk:XM (3.64) BS02 rna ? GO:0000049 ... P80377 30782843
    514238 6ndk:XN (3.64) BS01 rna ? GO:0003735 ... P0DOY6 30782843
    514239 6ndk:XN (3.64) BS02 ZN ? GO:0003735 ... P0DOY6 30782843
    514240 6ndk:XO (3.64) BS01 rna ? GO:0003735 ... Q5SJ76 30782843
    514241 6ndk:XO (3.64) BS02 rna ? GO:0003735 ... Q5SJ76 30782843
    514242 6ndk:XP (3.64) BS01 rna ? GO:0003735 ... Q5SJH3 30782843
    514243 6ndk:XQ (3.64) BS01 rna ? GO:0003735 ... P0DOY7 30782843
    514244 6ndk:XR (3.64) BS01 rna ? GO:0003735 ... Q5SLQ0 30782843
    514245 6ndk:XS (3.64) BS01 rna ? GO:0000028 ... Q5SHP2 30782843
    514246 6ndk:XT (3.64) BS01 rna ? GO:0003723 ... P80380 30782843
    514247 6ndk:Y0 (3.64) BS01 rna ? GO:0003735 ... P60493 30782843
    514248 6ndk:Y0 (3.64) BS02 rna ? GO:0003735 ... P60493 30782843
    514249 6ndk:Y1 (3.64) BS01 rna ? GO:0003735 ... P60494 30782843
    514250 6ndk:Y1 (3.64) BS02 MG ? GO:0003735 ... P60494 30782843
    514251 6ndk:Y2 (3.64) BS01 rna ? GO:0003735 ... Q5SHP6 30782843
    514252 6ndk:Y3 (3.64) BS01 rna ? GO:0003735 ... Q5SHQ6 30782843
    514253 6ndk:Y3 (3.64) BS02 rna ? GO:0003735 ... Q5SHQ6 30782843
    514254 6ndk:Y4 (3.64) BS01 rna ? GO:0003735 ... Q5SJE1 30782843
    514255 6ndk:Y4 (3.64) BS02 ZN ? GO:0003735 ... Q5SJE1 30782843
    514256 6ndk:Y5 (3.64) BS01 rna ? GO:0003735 ... P80339 30782843
    514257 6ndk:Y6 (3.64) BS01 rna ? GO:0000049 ... P35871 30782843
    514258 6ndk:Y7 (3.64) BS01 rna ? GO:0003735 ... P80340 30782843
    514259 6ndk:Y8 (3.64) BS01 rna ? GO:0003735 ... Q5SKU1 30782843
    514260 6ndk:Y9 (3.64) BS01 rna ? GO:0003735 ... Q5SHR2 30782843
    514261 6ndk:YD (3.64) BS01 rna ? GO:0002181 ... P60405 30782843
    514262 6ndk:YD (3.64) BS02 MG ? GO:0002181 ... P60405 30782843
    514263 6ndk:YD (3.64) BS03 MG ? GO:0002181 ... P60405 30782843
    514264 6ndk:YD (3.64) BS04 MG ? GO:0002181 ... P60405 30782843
    514265 6ndk:YE (3.64) BS01 rna ? GO:0003735 ... Q5SHN8 30782843
    514266 6ndk:YF (3.64) BS01 rna ? GO:0003735 ... Q5SHN9 30782843
    514267 6ndk:YF (3.64) BS02 MG ? GO:0003735 ... Q5SHN9 30782843
    514268 6ndk:YG (3.64) BS01 rna ? GO:0000049 ... Q5SHQ0 30782843
    514269 6ndk:YG (3.64) BS02 rna ? GO:0000049 ... Q5SHQ0 30782843
    514270 6ndk:YG (3.64) BS03 rna ? GO:0000049 ... Q5SHQ0 30782843
    514271 6ndk:YG (3.64) BS04 MG ? GO:0000049 ... Q5SHQ0 30782843
    514272 6ndk:YH (3.64) BS01 rna ? GO:0002181 ... P0DOY8 30782843
    514273 6ndk:YI (3.64) BS01 rna ? GO:0003735 ... Q5SLQ1 30782843
    514274 6ndk:YI (3.64) BS02 rna ? GO:0003735 ... Q5SLQ1 30782843
    514275 6ndk:YN (3.64) BS01 rna ? GO:0003729 ... P60488 30782843
    514276 6ndk:YO (3.64) BS01 rna ? GO:0003735 ... Q5SHP8 30782843
    514277 6ndk:YO (3.64) BS02 rna ? GO:0003735 ... Q5SHP8 30782843
    514278 6ndk:YP (3.64) BS01 rna ? GO:0003735 ... Q5SHQ7 30782843
    514279 6ndk:YQ (3.64) BS01 rna ? GO:0000049 ... P60489 30782843
    514280 6ndk:YQ (3.64) BS02 rna ? GO:0000049 ... P60489 30782843
    514281 6ndk:YQ (3.64) BS03 MG ? GO:0000049 ... P60489 30782843
    514282 6ndk:YR (3.64) BS01 rna ? GO:0003735 ... Q9Z9H5 30782843
    514283 6ndk:YS (3.64) BS01 rna ? GO:0003735 ... Q5SHQ4 30782843
    514284 6ndk:YS (3.64) BS02 rna ? GO:0003735 ... Q5SHQ4 30782843
    514285 6ndk:YT (3.64) BS01 rna ? GO:0003735 ... P60490 30782843
    514286 6ndk:YT (3.64) BS02 rna ? GO:0003735 ... P60490 30782843
    514287 6ndk:YU (3.64) BS01 rna ? GO:0000027 ... P60491 30782843
    514288 6ndk:YV (3.64) BS01 rna ? GO:0003723 ... P60492 30782843
    514289 6ndk:YW (3.64) BS01 rna ? GO:0003735 ... Q5SHP3 30782843
    514290 6ndk:YX (3.64) BS01 rna ? GO:0003735 ... Q5SHP0 30782843
    514291 6ndk:YY (3.64) BS01 rna ? GO:0003723 ... Q5SHP9 30782843
    514292 6ndk:YZ (3.64) BS01 rna ? GO:0003723 ... Q5SHZ1 30782843
    514293 6ndk:YZ (3.64) BS02 rna ? GO:0003723 ... Q5SHZ1 30782843
    514294 6ndl:A (2.0) BS01 BQX 6.3.4.15 GO:0003677 ... Q2G258 31407891 MOAD: Ki=0.065uM
    514295 6ndn:A (1.768) BS01 PLP N/A GO:0006534 ... N/A N/A
    514296 6ndo:A (3.58) BS01 BLA ? GO:0006355 ... A0A0H2XCS3 33864705
    514297 6ndo:B (3.58) BS01 BLA ? GO:0006355 ... A0A0H2XCS3 33864705
    514298 6ndp:A (3.89) BS01 BLA ? GO:0006355 ... A0A0H2XCS3 33864705
    514299 6ndp:B (3.89) BS01 BLA ? GO:0006355 ... A0A0H2XCS3 33864705
    514300 6ndr:A (1.6) BS01 TDO 5.1.3.13 GO:0000271 ... Q5ZXH5 N/A
    514301 6ndr:A (1.6) BS02 TDO 5.1.3.13 GO:0000271 ... Q5ZXH5 N/A
    514302 6ndr:B (1.6) BS01 TDO 5.1.3.13 GO:0000271 ... Q5ZXH5 N/A
    514303 6ndr:B (1.6) BS02 TDO 5.1.3.13 GO:0000271 ... Q5ZXH5 N/A
    514304 6nds:A (1.65) BS01 COA 4.1.3.4 GO:0003824 ... A0A0D5YK08 N/A
    514305 6nds:A (1.65) BS02 ZN 4.1.3.4 GO:0003824 ... A0A0D5YK08 N/A
    514306 6ndy:A (3.6) BS01 peptide ? GO:0005524 ... P52917 31184588
    514307 6ndy:A (3.6) BS02 ADP ? GO:0005524 ... P52917 31184588
    514308 6ndy:A (3.6) BS03 BEF ? GO:0005524 ... P52917 31184588
    514309 6ndy:B (3.6) BS01 peptide ? GO:0005524 ... P52917 31184588
    514310 6ndy:B (3.6) BS02 BEF ? GO:0005524 ... P52917 31184588
    514311 6ndy:B (3.6) BS03 ADP ? GO:0005524 ... P52917 31184588
    514312 6ndy:B (3.6) BS04 BEF ? GO:0005524 ... P52917 31184588
    514313 6ndy:C (3.6) BS01 peptide ? GO:0005524 ... P52917 31184588
    514314 6ndy:C (3.6) BS02 ADP ? GO:0005524 ... P52917 31184588
    514315 6ndy:C (3.6) BS03 BEF ? GO:0005524 ... P52917 31184588
    514316 6ndy:D (3.6) BS01 peptide ? GO:0005524 ... P52917 31184588
    514317 6ndy:D (3.6) BS02 ADP ? GO:0005524 ... P52917 31184588
    514318 6ndy:E (3.6) BS01 ADP ? GO:0005524 ... P52917 31184588
    514319 6ndy:E (3.6) BS02 ADP ? GO:0005524 ... P52917 31184588
    514320 6ne0:A (3.4) BS01 rna ? GO:0005515 ... Q02ML9 30872121
    514321 6ne0:A (3.4) BS02 dna ? GO:0005515 ... Q02ML9 30872121
    514322 6ne0:A (3.4) BS03 dna ? GO:0005515 ... Q02ML9 30872121
    514323 6ne0:B (3.4) BS01 rna ? GO:0005515 ... Q02MM0 30872121
    514324 6ne0:B (3.4) BS02 dna ? GO:0005515 ... Q02MM0 30872121
    514325 6ne0:B (3.4) BS03 dna ? GO:0005515 ... Q02MM0 30872121
    514326 6ne0:C (3.4) BS01 rna ? GO:0005515 ... Q02MM1 30872121
    514327 6ne0:C (3.4) BS02 dna ? GO:0005515 ... Q02MM1 30872121
    514328 6ne0:D (3.4) BS01 rna ? GO:0005515 ... Q02MM1 30872121
    514329 6ne0:D (3.4) BS02 dna ? GO:0005515 ... Q02MM1 30872121
    514330 6ne0:E (3.4) BS01 rna ? GO:0005515 ... Q02MM1 30872121
    514331 6ne0:E (3.4) BS02 dna ? GO:0005515 ... Q02MM1 30872121
    514332 6ne0:F (3.4) BS01 rna ? GO:0005515 ... Q02MM1 30872121
    514333 6ne0:F (3.4) BS02 dna ? GO:0005515 ... Q02MM1 30872121
    514334 6ne0:G (3.4) BS01 rna ? GO:0005515 ... Q02MM1 30872121
    514335 6ne0:G (3.4) BS02 dna ? GO:0005515 ... Q02MM1 30872121
    514336 6ne0:H (3.4) BS01 rna ? GO:0005515 ... Q02MM1 30872121
    514337 6ne0:H (3.4) BS02 dna ? GO:0005515 ... Q02MM1 30872121
    514338 6ne0:L (3.4) BS01 rna 3.1.-.- GO:0003723 ... Q02MM2 30872121
    514339 6ne3:A (3.9) BS01 dna ? GO:0000786 ... P84233 31210637
    514340 6ne3:A (3.9) BS02 dna ? GO:0000786 ... P84233 31210637
    514341 6ne3:B (3.9) BS01 dna ? GO:0000786 ... P62799 31210637
    514342 6ne3:B (3.9) BS02 dna ? GO:0000786 ... P62799 31210637
    514343 6ne3:C (3.9) BS01 dna ? GO:0000786 ... P06897 31210637
    514344 6ne3:D (3.9) BS01 dna ? GO:0000786 ... P02281 31210637
    514345 6ne3:D (3.9) BS02 dna ? GO:0000786 ... P02281 31210637
    514346 6ne3:E (3.9) BS01 dna ? GO:0000786 ... P84233 31210637
    514347 6ne3:E (3.9) BS02 dna ? GO:0000786 ... P84233 31210637
    514348 6ne3:F (3.9) BS01 dna ? GO:0000786 ... P62799 31210637
    514349 6ne3:F (3.9) BS02 dna ? GO:0000786 ... P62799 31210637
    514350 6ne3:G (3.9) BS01 dna ? GO:0000786 ... P06897 31210637
    514351 6ne3:G (3.9) BS02 dna ? GO:0000786 ... P06897 31210637
    514352 6ne3:H (3.9) BS01 dna ? GO:0000786 ... P02281 31210637
    514353 6ne3:H (3.9) BS02 dna ? GO:0000786 ... P02281 31210637
    514354 6ne3:W (3.9) BS01 dna 3.6.4.- GO:0005524 ... O60264 31210637
    514355 6ne3:W (3.9) BS02 dna 3.6.4.- GO:0005524 ... O60264 31210637
    514356 6ne3:W (3.9) BS03 ADP 3.6.4.- GO:0005524 ... O60264 31210637
    514357 6ne5:A (1.85) BS01 KJP ? GO:0042981 ... Q07820 30929420 MOAD: Ki=0.058nM
    BindingDB: Ki=0.058000nM
    514358 6ne5:B (1.85) BS01 KJP ? GO:0042981 ... Q07820 30929420 MOAD: Ki=0.058nM
    BindingDB: Ki=0.058000nM
    514359 6ne5:C (1.85) BS01 KJP ? GO:0042981 ... Q07820 30929420 MOAD: Ki=0.058nM
    BindingDB: Ki=0.058000nM
    514360 6ne5:D (1.85) BS01 KJP ? GO:0042981 ... Q07820 30929420 MOAD: Ki=0.058nM
    BindingDB: Ki=0.058000nM
    514361 6ne7:A (1.99) BS01 AMP 2.7.10.1 GO:0004672 ... P07949 31118272
    514362 6nea:A (2.419) BS01 HLO 3.1.1.7 GO:0001507 ... P22303 31097996
    514363 6nea:B (2.419) BS01 HLO 3.1.1.7 GO:0001507 ... P22303 31097996
    514364 6nec:A (1.87) BS01 XIN 2.7.10.1 GO:0004672 ... P07949 31118272 BindingDB: Kd=31nM
    514365 6nec:C (1.87) BS01 XIN 2.7.10.1 GO:0004672 ... P07949 31118272 BindingDB: Kd=31nM
    514366 6nee:A (1.9) BS01 PGH N/A GO:0004807 ... N/A 30589511
    514367 6nee:B (1.9) BS01 PGH N/A GO:0004807 ... N/A 30589511
    514368 6nef:A (3.4) BS01 HEC ? GO:0009055 ... Q74A86 31240257
    514369 6nef:A (3.4) BS02 HEC ? GO:0009055 ... Q74A86 31240257
    514370 6nef:A (3.4) BS03 HEC ? GO:0009055 ... Q74A86 31240257
    514371 6nef:A (3.4) BS04 HEC ? GO:0009055 ... Q74A86 31240257
    514372 6nef:A (3.4) BS05 HEC ? GO:0009055 ... Q74A86 31240257
    514373 6nef:A (3.4) BS06 HEC ? GO:0009055 ... Q74A86 31240257
    514374 6nef:A (3.4) BS07 MG ? GO:0009055 ... Q74A86 31240257
    514375 6neg:A (1.95) BS01 SAH 2.1.1.117 GO:0008168 ... Q5C9L2 N/A
    514376 6neg:B (1.95) BS01 SAH 2.1.1.117 GO:0008168 ... Q5C9L2 N/A
    514377 6neh:A (1.52) BS01 SAH 2.1.1.117 GO:0008168 ... Q5C9L2 N/A
    514378 6neh:A (1.52) BS02 SLX 2.1.1.117 GO:0008168 ... Q5C9L2 N/A
    514379 6neh:A (1.52) BS03 SLX 2.1.1.117 GO:0008168 ... Q5C9L2 N/A
    514380 6neh:B (1.52) BS01 SLX 2.1.1.117 GO:0008168 ... Q5C9L2 N/A
    514381 6neh:B (1.52) BS02 SAH 2.1.1.117 GO:0008168 ... Q5C9L2 N/A
    514382 6neh:B (1.52) BS03 SLX 2.1.1.117 GO:0008168 ... Q5C9L2 N/A
    514383 6nej:A (1.6) BS01 SLX 2.1.1.117 GO:0008168 ... Q5C9L2 N/A
    514384 6nej:A (1.6) BS02 SAH 2.1.1.117 GO:0008168 ... Q5C9L2 N/A
    514385 6nej:A (1.6) BS03 SLX 2.1.1.117 GO:0008168 ... Q5C9L2 N/A
    514386 6nej:B (1.6) BS01 SLX 2.1.1.117 GO:0008168 ... Q5C9L2 N/A
    514387 6nej:B (1.6) BS02 SLX 2.1.1.117 GO:0008168 ... Q5C9L2 N/A
    514388 6nej:B (1.6) BS03 SAH 2.1.1.117 GO:0008168 ... Q5C9L2 N/A
    514389 6nel:A (2.0) BS01 MN ? GO:0003723 ... C6H0Y9 30983160
    514390 6nel:A (2.0) BS02 MN ? GO:0003723 ... C6H0Y9 30983160
    514391 6nel:A (2.0) BS03 KKV ? GO:0003723 ... C6H0Y9 30983160 MOAD: ic50=11nM
    514392 6nem:A (1.95) BS01 MN ? GO:0003723 ... C6H0Y9 30983160
    514393 6nem:A (1.95) BS02 MN ? GO:0003723 ... C6H0Y9 30983160
    514394 6nem:A (1.95) BS03 KKS ? GO:0003723 ... C6H0Y9 30983160 MOAD: ic50=12nM
    514395 6neq:B (3.32) BS01 rna ? GO:0003735 ... P82923 30677741
    514396 6neq:C (3.32) BS01 rna ? GO:0003735 ... Q2M2T7 30677741
    514397 6neq:E (3.32) BS01 rna ? GO:0003723 ... Q2KID9 30677741
    514398 6neq:F (3.32) BS01 rna ? GO:0003735 ... P82931 30677741
    514399 6neq:G (3.32) BS01 rna ? GO:0000028 ... Q3T040 30677741
    514400 6neq:I (3.32) BS01 rna ? GO:0003723 ... Q58DQ5 30677741

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).