SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    516801 6nu2:M (3.9) BS01 rna ? GO:0003723 ... Q9P015 30962385
    516802 6nu2:M (3.9) BS02 MG ? GO:0003723 ... Q9P015 30962385
    516803 6nu2:N (3.9) BS01 rna ? GO:0003735 ... Q9NX20 30962385
    516804 6nu2:N (3.9) BS02 peptide ? GO:0003735 ... Q9NX20 30962385
    516805 6nu2:O (3.9) BS01 rna ? GO:0003735 ... Q9NRX2 30962385
    516806 6nu2:P (3.9) BS01 rna ? GO:0003735 ... Q9H0U6 30962385
    516807 6nu2:P (3.9) BS02 rna ? GO:0003735 ... Q9H0U6 30962385
    516808 6nu2:Q (3.9) BS01 rna ? GO:0003735 ... P49406 30962385
    516809 6nu2:R (3.9) BS01 rna ? GO:0003723 ... Q9BYC9 30962385
    516810 6nu2:S (3.9) BS01 rna ? GO:0003723 ... Q7Z2W9 30962385
    516811 6nu2:T (3.9) BS01 rna ? GO:0003735 ... Q9NWU5 30962385
    516812 6nu2:U (3.9) BS01 rna ? GO:0003735 ... Q16540 30962385
    516813 6nu2:V (3.9) BS01 rna ? GO:0003723 ... Q96A35 30962385
    516814 6nu2:W (3.9) BS01 rna ? GO:0003735 ... Q9P0M9 30962385
    516815 6nu2:X (3.9) BS01 rna ? GO:0003723 ... Q13084 30962385
    516816 6nu2:Y (3.9) BS01 rna ? GO:0003735 ... Q9HD33 30962385
    516817 6nu2:Z (3.9) BS01 rna ? GO:0003735 ... Q8TCC3 30962385
    516818 6nu2:a (3.9) BS01 rna ? N/A Q9Y6G3 30962385
    516819 6nu2:b (3.9) BS01 rna ? GO:0003735 ... Q8N983 30962385
    516820 6nu2:c (3.9) BS01 rna 3.1.26.- GO:0003725 ... Q9H9J2 30962385
    516821 6nu2:e (3.9) BS01 rna ? GO:0003735 ... Q9H2W6 30962385
    516822 6nu2:f (3.9) BS01 rna ? GO:0005761 ... Q96GC5 30962385
    516823 6nu2:f (3.9) BS02 rna ? GO:0005761 ... Q96GC5 30962385
    516824 6nu2:g (3.9) BS01 rna ? GO:0003735 ... Q13405 30962385
    516825 6nu2:i (3.9) BS01 rna ? GO:0003735 ... Q4U2R6 30962385
    516826 6nu2:j (3.9) BS01 rna ? GO:0003735 ... Q86TS9 30962385
    516827 6nu2:o (3.9) BS01 rna ? GO:0003735 ... Q9BQC6 30962385
    516828 6nu2:o (3.9) BS02 MG ? GO:0003735 ... Q9BQC6 30962385
    516829 6nu2:q (3.9) BS01 rna ? GO:0005634 ... Q8TAE8 30962385
    516830 6nu2:r (3.9) BS01 rna ? GO:0003735 ... Q9NVS2 30962385
    516831 6nu2:s (3.9) BS01 rna ? GO:0003735 ... Q9NP92 30962385
    516832 6nu2:z (3.9) BS01 rna ? GO:0006412 ... Q96E11 30962385
    516833 6nu3:0 (4.4) BS01 rna ? GO:0003723 ... Q9BYC8 30962385
    516834 6nu3:0 (4.4) BS02 ZN ? GO:0003723 ... Q9BYC8 30962385
    516835 6nu3:1 (4.4) BS01 rna ? GO:0003735 ... O75394 30962385
    516836 6nu3:2 (4.4) BS01 rna ? GO:0003735 ... Q9BQ48 30962385
    516837 6nu3:3 (4.4) BS01 rna ? GO:0003735 ... Q9NZE8 30962385
    516838 6nu3:4 (4.4) BS01 rna ? GO:0003735 ... Q9P0J6 30962385
    516839 6nu3:5 (4.4) BS01 rna ? GO:0003723 ... Q9BZE1 30962385
    516840 6nu3:6 (4.4) BS01 rna ? GO:0005515 ... Q96DV4 30962385
    516841 6nu3:6 (4.4) BS02 rna ? GO:0005515 ... Q96DV4 30962385
    516842 6nu3:8 (4.4) BS01 rna ? GO:0003723 ... Q9NQ50 30962385
    516843 6nu3:9 (4.4) BS01 rna ? GO:0003723 ... Q8IXM3 30962385
    516844 6nu3:A0 (4.4) BS01 rna ? GO:0003735 ... C9JJ19 30962385
    516845 6nu3:A2 (4.4) BS01 rna ? GO:0001650 ... Q96BP2 30962385
    516846 6nu3:A3 (4.4) BS01 rna ? GO:0005515 ... Q9NWT8 30962385
    516847 6nu3:A3 (4.4) BS02 rna ? GO:0005515 ... Q9NWT8 30962385
    516848 6nu3:AB (4.4) BS01 rna ? GO:0003735 ... Q9Y399 30962385
    516849 6nu3:AB (4.4) BS02 ZN ? GO:0003735 ... Q9Y399 30962385
    516850 6nu3:AC (4.4) BS01 rna ? GO:0003723 ... Q96EL2 30962385
    516851 6nu3:AD (4.4) BS01 rna ? GO:0003723 ... P82675 30962385
    516852 6nu3:AE (4.4) BS01 rna ? GO:0003735 ... P82932 30962385
    516853 6nu3:AF (4.4) BS01 rna ? GO:0000028 ... Q9Y2R9 30962385
    516854 6nu3:AG (4.4) BS01 rna ? GO:0003723 ... P82933 30962385
    516855 6nu3:AH (4.4) BS01 rna ? GO:0005739 ... P82664 30962385
    516856 6nu3:AI (4.4) BS01 rna ? GO:0003723 ... P82912 30962385
    516857 6nu3:AJ (4.4) BS01 rna ? GO:0003723 ... O15235 30962385
    516858 6nu3:AK (4.4) BS01 rna ? GO:0003723 ... O60783 30962385
    516859 6nu3:AL (4.4) BS01 rna ? GO:0003723 ... P82914 30962385
    516860 6nu3:AM (4.4) BS01 rna ? GO:0003735 ... Q9Y3D3 30962385
    516861 6nu3:AN (4.4) BS01 rna ? GO:0003735 ... Q9Y2R5 30962385
    516862 6nu3:AO (4.4) BS01 rna ? GO:0003735 ... Q9Y676 30962385
    516863 6nu3:AO (4.4) BS02 ZN ? GO:0003735 ... Q9Y676 30962385
    516864 6nu3:AP (4.4) BS01 rna ? GO:0003735 ... Q9Y3D5 30962385
    516865 6nu3:AQ (4.4) BS01 rna ? GO:0003723 ... P82921 30962385
    516866 6nu3:AS (4.4) BS01 rna ? GO:0003723 ... Q9Y3D9 30962385
    516867 6nu3:AT (4.4) BS01 rna ? GO:0003735 ... P82663 30962385
    516868 6nu3:AU (4.4) BS01 rna ? GO:0003723 ... Q9BYN8 30962385
    516869 6nu3:AV (4.4) BS01 rna ? GO:0000049 ... Q92552 30962385
    516870 6nu3:AX (4.4) BS01 rna ? GO:0003723 ... P51398 30962385
    516871 6nu3:AZ (4.4) BS01 rna ? GO:0003735 ... Q9Y291 30962385
    516872 6nu3:D (4.4) BS01 rna ? GO:0003723 ... Q5T653 30962385
    516873 6nu3:E (4.4) BS01 rna ? GO:0003723 ... P09001 30962385
    516874 6nu3:F (4.4) BS01 rna ? GO:0003723 ... Q9BYD3 30962385
    516875 6nu3:H (4.4) BS01 rna ? GO:0003723 ... Q9BYD2 30962385
    516876 6nu3:I (4.4) BS01 rna ? GO:0003723 ... Q7Z7H8 30962385
    516877 6nu3:I (4.4) BS02 peptide ? GO:0003723 ... Q7Z7H8 30962385
    516878 6nu3:J (4.4) BS01 rna ? GO:0003723 ... Q9Y3B7 30962385
    516879 6nu3:K (4.4) BS01 rna ? GO:0003723 ... Q9BYD1 30962385
    516880 6nu3:L (4.4) BS01 rna ? GO:0003723 ... Q6P1L8 30962385
    516881 6nu3:L (4.4) BS02 rna ? GO:0003723 ... Q6P1L8 30962385
    516882 6nu3:M (4.4) BS01 rna ? GO:0003723 ... Q9P015 30962385
    516883 6nu3:N (4.4) BS01 rna ? GO:0003735 ... Q9NX20 30962385
    516884 6nu3:N (4.4) BS02 peptide ? GO:0003735 ... Q9NX20 30962385
    516885 6nu3:O (4.4) BS01 rna ? GO:0003735 ... Q9NRX2 30962385
    516886 6nu3:P (4.4) BS01 rna ? GO:0003723 ... Q9H0U6 30962385
    516887 6nu3:P (4.4) BS02 rna ? GO:0003723 ... Q9H0U6 30962385
    516888 6nu3:Q (4.4) BS01 rna ? GO:0003735 ... P49406 30962385
    516889 6nu3:R (4.4) BS01 rna ? GO:0003723 ... Q9BYC9 30962385
    516890 6nu3:S (4.4) BS01 rna ? GO:0003723 ... Q7Z2W9 30962385
    516891 6nu3:T (4.4) BS01 rna ? GO:0003723 ... Q9NWU5 30962385
    516892 6nu3:U (4.4) BS01 rna ? GO:0001650 ... Q16540 30962385
    516893 6nu3:V (4.4) BS01 rna ? GO:0003723 ... Q96A35 30962385
    516894 6nu3:W (4.4) BS01 rna ? GO:0003723 ... Q9P0M9 30962385
    516895 6nu3:X (4.4) BS01 rna ? GO:0003723 ... Q13084 30962385
    516896 6nu3:Y (4.4) BS01 rna ? GO:0003735 ... Q9HD33 30962385
    516897 6nu3:Z (4.4) BS01 rna ? GO:0003735 ... Q8TCC3 30962385
    516898 6nu3:a (4.4) BS01 rna ? GO:0003723 ... Q9Y6G3 30962385
    516899 6nu3:b (4.4) BS01 rna ? GO:0003723 ... Q8N983 30962385
    516900 6nu3:c (4.4) BS01 rna 3.1.26.- GO:0003723 ... Q9H9J2 30962385
    516901 6nu3:f (4.4) BS01 rna ? GO:0005515 ... Q96GC5 30962385
    516902 6nu3:f (4.4) BS02 rna ? GO:0005515 ... Q96GC5 30962385
    516903 6nu3:g (4.4) BS01 rna ? GO:0003735 ... Q13405 30962385
    516904 6nu3:i (4.4) BS01 rna ? GO:0003735 ... Q4U2R6 30962385
    516905 6nu3:j (4.4) BS01 rna ? GO:0003735 ... Q86TS9 30962385
    516906 6nu3:o (4.4) BS01 rna ? GO:0003735 ... Q9BQC6 30962385
    516907 6nu3:q (4.4) BS01 rna ? GO:0005515 ... Q8TAE8 30962385
    516908 6nu3:r (4.4) BS01 rna ? GO:0003735 ... Q9NVS2 30962385
    516909 6nu3:s (4.4) BS01 rna ? GO:0003723 ... Q9NP92 30962385
    516910 6nu5:A (1.6) BS01 CYS 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 31386812
    516911 6nu5:A (1.6) BS02 OXL 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 31386812
    516912 6nu5:A (1.6) BS03 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 31386812
    516913 6nu5:B (1.6) BS01 CYS 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 31386812
    516914 6nu5:B (1.6) BS02 OXL 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 31386812
    516915 6nu5:B (1.6) BS03 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 31386812
    516916 6nu6:A (2.437) BS01 L1V 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    516917 6nu6:A (2.437) BS02 L1Y 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    516918 6nu6:A (2.437) BS03 L1V 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    516919 6nu6:A (2.437) BS04 L1Y 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    516920 6nu6:B (2.437) BS01 L1V 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    516921 6nu6:B (2.437) BS02 L1Y 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    516922 6nu6:B (2.437) BS03 L1V 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    516923 6nu6:B (2.437) BS04 L1Y 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    516924 6nu6:C (2.437) BS01 L1V 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    516925 6nu6:C (2.437) BS02 L1Y 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    516926 6nu6:C (2.437) BS03 L1V 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    516927 6nu6:C (2.437) BS04 L1Y 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    516928 6nu6:D (2.437) BS01 L1V 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    516929 6nu6:D (2.437) BS02 L1Y 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    516930 6nu6:D (2.437) BS03 L1V 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    516931 6nu6:D (2.437) BS04 L1Y 6.3.3.3 GO:0000287 ... P9WPQ5 N/A
    516932 6nu8:A (1.8) BS01 FRU 3.2.1.26 GO:0004553 ... D1YK18 N/A
    516933 6nu9:A (1.761) BS01 ZN 2.1.1.-
    2.7.7.-
    2.7.7.48
    3.4.-.-
    3.6.4.-
    GO:0019082 ... P33424 31019049
    516934 6nu9:A (1.761) BS02 NO2 2.1.1.-
    2.7.7.-
    2.7.7.48
    3.4.-.-
    3.6.4.-
    GO:0019082 ... P33424 31019049
    516935 6nua:A (1.64) BS01 dna 3.4.-.-
    4.-.-.-
    GO:0003677 ... P76318 31235915
    516936 6nua:B (1.64) BS01 dna 3.4.-.-
    4.-.-.-
    GO:0003677 ... P76318 31235915
    516937 6nub:A (1.7) BS01 SER 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 31386812
    516938 6nub:A (1.7) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 31386812
    516939 6nub:A (1.7) BS03 OXL 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 31386812
    516940 6nub:B (1.7) BS01 SER 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 31386812
    516941 6nub:B (1.7) BS02 MG 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 31386812
    516942 6nub:B (1.7) BS03 OXL 2.7.10.2
    2.7.11.1
    2.7.1.40
    GO:0000287 ... P14618 31386812
    516943 6nuc:A (1.9) BS01 peptide 3.1.3.16 GO:0016787 ... Q08209 31375679
    516944 6nuc:A (1.9) BS02 FE 3.1.3.16 GO:0016787 ... Q08209 31375679
    516945 6nuc:A (1.9) BS03 ZN 3.1.3.16 GO:0016787 ... Q08209 31375679
    516946 6nuc:B (1.9) BS01 peptide ? GO:0001569 ... P63098 31375679
    516947 6nuc:B (1.9) BS02 CA ? GO:0001569 ... P63098 31375679
    516948 6nuc:B (1.9) BS03 CA ? GO:0001569 ... P63098 31375679
    516949 6nuc:B (1.9) BS04 CA ? GO:0001569 ... P63098 31375679
    516950 6nuc:B (1.9) BS05 CA ? GO:0001569 ... P63098 31375679
    516951 6nud:A (3.5) BS01 rna ? GO:0003723 ... A0A0A7HIX1 30814678
    516952 6nud:B (3.5) BS01 rna ? GO:0003723 ... A0A0A7HIX1 30814678
    516953 6nud:C (3.5) BS01 rna 3.1.-.- GO:0003723 ... A0A0A7HIF0 30814678
    516954 6nud:E (3.5) BS01 rna 3.1.-.- GO:0003723 ... A0A0A7HIF0 30814678
    516955 6nud:E (3.5) BS02 rna 3.1.-.- GO:0003723 ... A0A0A7HIF0 30814678
    516956 6nud:I (3.5) BS01 rna ? GO:0003723 ... A0A0A7HGA1 30814678
    516957 6nud:J (3.5) BS01 rna 2.7.7.-
    3.1.-.-
    GO:0003723 ... A0A0A7HFE1 30814678
    516958 6nud:J (3.5) BS02 ATP 2.7.7.-
    3.1.-.-
    GO:0003723 ... A0A0A7HFE1 30814678
    516959 6nud:N (3.5) BS01 rna 3.1.-.- GO:0003723 ... A0A0A7HIF0 30814678
    516960 6nud:N (3.5) BS02 rna 3.1.-.- GO:0003723 ... A0A0A7HIF0 30814678
    516961 6nud:O (3.5) BS01 rna 3.1.-.- GO:0003723 ... A0A0A7HIF0 30814678
    516962 6nud:O (3.5) BS02 rna 3.1.-.- GO:0003723 ... A0A0A7HIF0 30814678
    516963 6nud:P (3.5) BS01 rna 3.1.-.- GO:0003723 ... A0A0A7HIF0 30814678
    516964 6nud:P (3.5) BS02 rna 3.1.-.- GO:0003723 ... A0A0A7HIF0 30814678
    516965 6nue:C (3.3) BS01 rna 3.1.-.- GO:0003723 ... A0A0A7HIF0 30814678
    516966 6nue:E (3.3) BS01 rna 3.1.-.- GO:0003723 ... A0A0A7HIF0 30814678
    516967 6nue:I (3.3) BS01 rna ? GO:0003723 ... A0A0A7HGA1 30814678
    516968 6nue:I (3.3) BS02 ATP ? GO:0003723 ... A0A0A7HGA1 30814678
    516969 6nue:J (3.3) BS01 ATP 2.7.7.-
    3.1.-.-
    GO:0003723 ... A0A0A7HFE1 30814678
    516970 6nue:N (3.3) BS01 rna 3.1.-.- GO:0003723 ... A0A0A7HIF0 30814678
    516971 6nue:O (3.3) BS01 rna 3.1.-.- GO:0003723 ... A0A0A7HIF0 30814678
    516972 6nue:P (3.3) BS01 rna 3.1.-.- GO:0003723 ... A0A0A7HIF0 30814678
    516973 6nuf:A (1.9) BS01 peptide 3.1.3.16 GO:0016787 ... Q08209 31375679
    516974 6nuf:A (1.9) BS02 FE 3.1.3.16 GO:0016787 ... Q08209 31375679
    516975 6nuf:A (1.9) BS03 ZN 3.1.3.16 GO:0016787 ... Q08209 31375679
    516976 6nuf:B (1.9) BS01 peptide ? GO:0001569 ... P63098 31375679
    516977 6nuf:B (1.9) BS02 CA ? GO:0001569 ... P63098 31375679
    516978 6nuf:B (1.9) BS03 CA ? GO:0001569 ... P63098 31375679
    516979 6nuf:B (1.9) BS04 CA ? GO:0001569 ... P63098 31375679
    516980 6nuf:B (1.9) BS05 CA ? GO:0001569 ... P63098 31375679
    516981 6nuh:A (1.594) BS01 dna 3.4.-.-
    4.-.-.-
    GO:0003677 ... P76318 31235915
    516982 6nuj:A (2.10003) BS01 L3D ? GO:0003676 ... F2WR52 31120420
    516983 6nul:A (1.8) BS01 FMN ? GO:0009055 ... P00322 9063874
    516984 6nun:A (1.87) BS01 FRU 3.2.1.26 GO:0004553 ... A1A2J8 N/A
    516985 6nuo:QB (3.2) BS01 rna ? GO:0003735 ... P80371 33016876
    516986 6nuo:QC (3.2) BS01 rna ? GO:0003676 ... P80372 33016876
    516987 6nuo:QD (3.2) BS01 rna ? GO:0003723 ... P80373 33016876
    516988 6nuo:QD (3.2) BS02 SF4 ? GO:0003723 ... P80373 33016876
    516989 6nuo:QE (3.2) BS01 rna ? GO:0003723 ... Q5SHQ5 33016876
    516990 6nuo:QF (3.2) BS01 rna ? GO:0003735 ... Q5SLP8 33016876
    516991 6nuo:QG (3.2) BS01 rna ? GO:0000049 ... P17291 33016876
    516992 6nuo:QG (3.2) BS02 rna ? GO:0000049 ... P17291 33016876
    516993 6nuo:QH (3.2) BS01 rna ? GO:0003735 ... P0DOY9 33016876
    516994 6nuo:QI (3.2) BS01 rna ? GO:0000049 ... P80374 33016876
    516995 6nuo:QJ (3.2) BS01 rna ? GO:0000049 ... Q5SHN7 33016876
    516996 6nuo:QK (3.2) BS01 rna ? GO:0003735 ... P80376 33016876
    516997 6nuo:QL (3.2) BS01 rna ? GO:0000049 ... Q5SHN3 33016876
    516998 6nuo:QM (3.2) BS01 rna ? GO:0000049 ... P80377 33016876
    516999 6nuo:QN (3.2) BS01 rna ? GO:0003735 ... P0DOY6 33016876
    517000 6nuo:QN (3.2) BS02 ZN ? GO:0003735 ... P0DOY6 33016876

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).