SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    518001 6nwy:QD (3.5) BS01 rna ? GO:0003723 ... P80373 33016876
    518002 6nwy:QD (3.5) BS02 SF4 ? GO:0003723 ... P80373 33016876
    518003 6nwy:QE (3.5) BS01 rna ? GO:0003723 ... Q5SHQ5 33016876
    518004 6nwy:QF (3.5) BS01 rna ? GO:0003735 ... Q5SLP8 33016876
    518005 6nwy:QF (3.5) BS02 MG ? GO:0003735 ... Q5SLP8 33016876
    518006 6nwy:QG (3.5) BS01 rna ? GO:0000049 ... P17291 33016876
    518007 6nwy:QH (3.5) BS01 rna ? GO:0003735 ... P0DOY9 33016876
    518008 6nwy:QI (3.5) BS01 rna ? GO:0000049 ... P80374 33016876
    518009 6nwy:QJ (3.5) BS01 rna ? GO:0000049 ... Q5SHN7 33016876
    518010 6nwy:QK (3.5) BS01 rna ? GO:0003735 ... P80376 33016876
    518011 6nwy:QL (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 33016876
    518012 6nwy:QM (3.5) BS01 rna ? GO:0000049 ... P80377 33016876
    518013 6nwy:QN (3.5) BS01 rna ? GO:0003735 ... P0DOY6 33016876
    518014 6nwy:QN (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 33016876
    518015 6nwy:QO (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 33016876
    518016 6nwy:QO (3.5) BS02 rna ? GO:0003735 ... Q5SJ76 33016876
    518017 6nwy:QP (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 33016876
    518018 6nwy:QQ (3.5) BS01 rna ? GO:0003735 ... P0DOY7 33016876
    518019 6nwy:QR (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 33016876
    518020 6nwy:QS (3.5) BS01 rna ? GO:0000028 ... Q5SHP2 33016876
    518021 6nwy:QT (3.5) BS01 rna ? GO:0003723 ... P80380 33016876
    518022 6nwy:R0 (3.5) BS01 rna ? GO:0003735 ... P60493 33016876
    518023 6nwy:R1 (3.5) BS01 rna ? GO:0003735 ... P60494 33016876
    518024 6nwy:R2 (3.5) BS01 rna ? GO:0003735 ... Q5SHP6 33016876
    518025 6nwy:R3 (3.5) BS01 rna ? GO:0003735 ... Q5SHQ6 33016876
    518026 6nwy:R5 (3.5) BS01 rna ? GO:0003735 ... P80339 33016876
    518027 6nwy:R5 (3.5) BS02 ZN ? GO:0003735 ... P80339 33016876
    518028 6nwy:R6 (3.5) BS01 rna ? GO:0000049 ... P35871 33016876
    518029 6nwy:R6 (3.5) BS02 ZN ? GO:0000049 ... P35871 33016876
    518030 6nwy:R7 (3.5) BS01 rna ? GO:0003735 ... P80340 33016876
    518031 6nwy:R8 (3.5) BS01 rna ? GO:0003735 ... Q5SKU1 33016876
    518032 6nwy:R9 (3.5) BS01 rna ? GO:0003735 ... Q5SHR2 33016876
    518033 6nwy:R9 (3.5) BS02 ZN ? GO:0003735 ... Q5SHR2 33016876
    518034 6nwy:RD (3.5) BS01 rna ? GO:0002181 ... P60405 33016876
    518035 6nwy:RD (3.5) BS02 rna ? GO:0002181 ... P60405 33016876
    518036 6nwy:RE (3.5) BS01 rna ? GO:0003735 ... Q5SHN8 33016876
    518037 6nwy:RF (3.5) BS01 rna ? GO:0003735 ... Q5SHN9 33016876
    518038 6nwy:RF (3.5) BS02 MG ? GO:0003735 ... Q5SHN9 33016876
    518039 6nwy:RF (3.5) BS03 MG ? GO:0003735 ... Q5SHN9 33016876
    518040 6nwy:RG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 33016876
    518041 6nwy:RG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 33016876
    518042 6nwy:RH (3.5) BS01 rna ? GO:0002181 ... P0DOY8 33016876
    518043 6nwy:RI (3.5) BS01 rna ? GO:0003735 ... Q5SLQ1 33016876
    518044 6nwy:RN (3.5) BS01 rna ? GO:0003729 ... P60488 33016876
    518045 6nwy:RO (3.5) BS01 rna ? GO:0003735 ... Q5SHP8 33016876
    518046 6nwy:RO (3.5) BS02 rna ? GO:0003735 ... Q5SHP8 33016876
    518047 6nwy:RP (3.5) BS01 rna ? GO:0003735 ... Q5SHQ7 33016876
    518048 6nwy:RQ (3.5) BS01 rna ? GO:0000049 ... P60489 33016876
    518049 6nwy:RQ (3.5) BS02 rna ? GO:0000049 ... P60489 33016876
    518050 6nwy:RR (3.5) BS01 rna ? GO:0003735 ... Q9Z9H5 33016876
    518051 6nwy:RS (3.5) BS01 rna ? GO:0003735 ... Q5SHQ4 33016876
    518052 6nwy:RS (3.5) BS02 rna ? GO:0003735 ... Q5SHQ4 33016876
    518053 6nwy:RT (3.5) BS01 rna ? GO:0003735 ... P60490 33016876
    518054 6nwy:RT (3.5) BS02 rna ? GO:0003735 ... P60490 33016876
    518055 6nwy:RU (3.5) BS01 rna ? GO:0000027 ... P60491 33016876
    518056 6nwy:RV (3.5) BS01 rna ? GO:0003723 ... P60492 33016876
    518057 6nwy:RW (3.5) BS01 rna ? GO:0003735 ... Q5SHP3 33016876
    518058 6nwy:RX (3.5) BS01 rna ? GO:0003735 ... Q5SHP0 33016876
    518059 6nwy:RY (3.5) BS01 rna ? GO:0003723 ... Q5SHP9 33016876
    518060 6nwy:RY (3.5) BS02 ZN ? GO:0003723 ... Q5SHP9 33016876
    518061 6nwy:RZ (3.5) BS01 rna ? GO:0003723 ... Q5SHZ1 33016876
    518062 6nwy:RZ (3.5) BS02 rna ? GO:0003723 ... Q5SHZ1 33016876
    518063 6nwy:XB (3.5) BS01 rna ? GO:0003735 ... P80371 33016876
    518064 6nwy:XC (3.5) BS01 rna ? GO:0003676 ... P80372 33016876
    518065 6nwy:XD (3.5) BS01 rna ? GO:0003723 ... P80373 33016876
    518066 6nwy:XD (3.5) BS02 SF4 ? GO:0003723 ... P80373 33016876
    518067 6nwy:XE (3.5) BS01 rna ? GO:0003723 ... Q5SHQ5 33016876
    518068 6nwy:XF (3.5) BS01 rna ? GO:0003735 ... Q5SLP8 33016876
    518069 6nwy:XG (3.5) BS01 rna ? GO:0000049 ... P17291 33016876
    518070 6nwy:XH (3.5) BS01 rna ? GO:0003735 ... P0DOY9 33016876
    518071 6nwy:XI (3.5) BS01 rna ? GO:0000049 ... P80374 33016876
    518072 6nwy:XJ (3.5) BS01 rna ? GO:0000049 ... Q5SHN7 33016876
    518073 6nwy:XK (3.5) BS01 rna ? GO:0003735 ... P80376 33016876
    518074 6nwy:XL (3.5) BS01 rna ? GO:0000049 ... Q5SHN3 33016876
    518075 6nwy:XM (3.5) BS01 rna ? GO:0000049 ... P80377 33016876
    518076 6nwy:XN (3.5) BS01 rna ? GO:0003735 ... P0DOY6 33016876
    518077 6nwy:XN (3.5) BS02 ZN ? GO:0003735 ... P0DOY6 33016876
    518078 6nwy:XO (3.5) BS01 rna ? GO:0003735 ... Q5SJ76 33016876
    518079 6nwy:XO (3.5) BS02 rna ? GO:0003735 ... Q5SJ76 33016876
    518080 6nwy:XP (3.5) BS01 rna ? GO:0003735 ... Q5SJH3 33016876
    518081 6nwy:XQ (3.5) BS01 rna ? GO:0003735 ... P0DOY7 33016876
    518082 6nwy:XR (3.5) BS01 rna ? GO:0003735 ... Q5SLQ0 33016876
    518083 6nwy:XS (3.5) BS01 rna ? GO:0000028 ... Q5SHP2 33016876
    518084 6nwy:XT (3.5) BS01 rna ? GO:0003723 ... P80380 33016876
    518085 6nwy:Y0 (3.5) BS01 rna ? GO:0003735 ... P60493 33016876
    518086 6nwy:Y0 (3.5) BS02 rna ? GO:0003735 ... P60493 33016876
    518087 6nwy:Y1 (3.5) BS01 rna ? GO:0003735 ... P60494 33016876
    518088 6nwy:Y2 (3.5) BS01 rna ? GO:0003735 ... Q5SHP6 33016876
    518089 6nwy:Y2 (3.5) BS02 MG ? GO:0003735 ... Q5SHP6 33016876
    518090 6nwy:Y3 (3.5) BS01 rna ? GO:0003735 ... Q5SHQ6 33016876
    518091 6nwy:Y3 (3.5) BS02 rna ? GO:0003735 ... Q5SHQ6 33016876
    518092 6nwy:Y4 (3.5) BS01 rna ? GO:0003735 ... Q5SJE1 33016876
    518093 6nwy:Y5 (3.5) BS01 rna ? GO:0003735 ... P80339 33016876
    518094 6nwy:Y5 (3.5) BS02 ZN ? GO:0003735 ... P80339 33016876
    518095 6nwy:Y6 (3.5) BS01 rna ? GO:0000049 ... P35871 33016876
    518096 6nwy:Y6 (3.5) BS02 ZN ? GO:0000049 ... P35871 33016876
    518097 6nwy:Y7 (3.5) BS01 rna ? GO:0003735 ... P80340 33016876
    518098 6nwy:Y8 (3.5) BS01 rna ? GO:0003735 ... Q5SKU1 33016876
    518099 6nwy:Y9 (3.5) BS01 rna ? GO:0003735 ... Q5SHR2 33016876
    518100 6nwy:Y9 (3.5) BS02 ZN ? GO:0003735 ... Q5SHR2 33016876
    518101 6nwy:YD (3.5) BS01 rna ? GO:0002181 ... P60405 33016876
    518102 6nwy:YD (3.5) BS02 MG ? GO:0002181 ... P60405 33016876
    518103 6nwy:YD (3.5) BS03 MG ? GO:0002181 ... P60405 33016876
    518104 6nwy:YE (3.5) BS01 rna ? GO:0003735 ... Q5SHN8 33016876
    518105 6nwy:YF (3.5) BS01 rna ? GO:0003735 ... Q5SHN9 33016876
    518106 6nwy:YG (3.5) BS01 rna ? GO:0000049 ... Q5SHQ0 33016876
    518107 6nwy:YG (3.5) BS02 rna ? GO:0000049 ... Q5SHQ0 33016876
    518108 6nwy:YH (3.5) BS01 rna ? GO:0002181 ... P0DOY8 33016876
    518109 6nwy:YI (3.5) BS01 rna ? GO:0003735 ... Q5SLQ1 33016876
    518110 6nwy:YI (3.5) BS02 rna ? GO:0003735 ... Q5SLQ1 33016876
    518111 6nwy:YN (3.5) BS01 rna ? GO:0003729 ... P60488 33016876
    518112 6nwy:YO (3.5) BS01 rna ? GO:0003735 ... Q5SHP8 33016876
    518113 6nwy:YO (3.5) BS02 rna ? GO:0003735 ... Q5SHP8 33016876
    518114 6nwy:YP (3.5) BS01 rna ? GO:0003735 ... Q5SHQ7 33016876
    518115 6nwy:YQ (3.5) BS01 rna ? GO:0000049 ... P60489 33016876
    518116 6nwy:YQ (3.5) BS02 rna ? GO:0000049 ... P60489 33016876
    518117 6nwy:YQ (3.5) BS03 MG ? GO:0000049 ... P60489 33016876
    518118 6nwy:YR (3.5) BS01 rna ? GO:0003735 ... Q9Z9H5 33016876
    518119 6nwy:YS (3.5) BS01 rna ? GO:0003735 ... Q5SHQ4 33016876
    518120 6nwy:YS (3.5) BS02 rna ? GO:0003735 ... Q5SHQ4 33016876
    518121 6nwy:YT (3.5) BS01 rna ? GO:0003735 ... P60490 33016876
    518122 6nwy:YT (3.5) BS02 rna ? GO:0003735 ... P60490 33016876
    518123 6nwy:YU (3.5) BS01 rna ? GO:0000027 ... P60491 33016876
    518124 6nwy:YV (3.5) BS01 rna ? GO:0003723 ... P60492 33016876
    518125 6nwy:YW (3.5) BS01 rna ? GO:0003735 ... Q5SHP3 33016876
    518126 6nwy:YX (3.5) BS01 rna ? GO:0003735 ... Q5SHP0 33016876
    518127 6nwy:YY (3.5) BS01 rna ? GO:0003723 ... Q5SHP9 33016876
    518128 6nwy:YY (3.5) BS02 ZN ? GO:0003723 ... Q5SHP9 33016876
    518129 6nwy:YZ (3.5) BS01 rna ? GO:0003723 ... Q5SHZ1 33016876
    518130 6nwz:A (2.6) BS01 MAN ? N/A Q4WX15 32415073
    518131 6nwz:A (2.6) BS02 ZN ? N/A Q4WX15 32415073
    518132 6nwz:A (2.6) BS03 ZN ? N/A Q4WX15 32415073
    518133 6nwz:A (2.6) BS04 ZN ? N/A Q4WX15 32415073
    518134 6nwz:A (2.6) BS05 ZN ? N/A Q4WX15 32415073
    518135 6nwz:A (2.6) BS06 ZN ? N/A Q4WX15 32415073
    518136 6nx0:A (1.54) BS01 HEC ? GO:0009055 ... Q2T6B0 30846684
    518137 6nx0:A (1.54) BS02 HEC ? GO:0009055 ... Q2T6B0 30846684
    518138 6nx1:A (2.27) BS01 L7D 2.3.1.48 GO:0003677 ... O75469
    Q15788
    30891142
    518139 6nx1:B (2.27) BS01 L7D 2.3.1.48 GO:0003677 ... O75469
    Q15788
    30891142
    518140 6nx3:A (1.87) BS01 BGC ? GO:0006355 ... Q8XMB9 31282473
    518141 6nx3:A (1.87) BS02 GAL ? GO:0006355 ... Q8XMB9 31282473
    518142 6nx3:B (1.87) BS01 BGC ? GO:0006355 ... Q8XMB9 31282473
    518143 6nx3:B (1.87) BS02 GAL ? GO:0006355 ... Q8XMB9 31282473
    518144 6nx3:C (1.87) BS01 BGC ? GO:0006355 ... Q8XMB9 31282473
    518145 6nx3:C (1.87) BS02 GAL ? GO:0006355 ... Q8XMB9 31282473
    518146 6nx3:D (1.87) BS01 BGC ? GO:0006355 ... Q8XMB9 31282473
    518147 6nx3:D (1.87) BS02 GAL ? GO:0006355 ... Q8XMB9 31282473
    518148 6nx3:E (1.87) BS01 BGC ? GO:0006355 ... Q8XMB9 31282473
    518149 6nx3:E (1.87) BS02 GAL ? GO:0006355 ... Q8XMB9 31282473
    518150 6nx3:F (1.87) BS01 BGC ? GO:0006355 ... Q8XMB9 31282473
    518151 6nx3:F (1.87) BS02 GAL ? GO:0006355 ... Q8XMB9 31282473
    518152 6nxc:A (1.74) BS01 ASN 3.5.1.1 GO:0004067 ... P0A962 31363102
    518153 6nxc:B (1.74) BS01 ASN 3.5.1.1 GO:0004067 ... P0A962 31363102
    518154 6nxc:C (1.74) BS01 ASN 3.5.1.1 GO:0004067 ... P0A962 31363102
    518155 6nxc:D (1.74) BS01 ASN 3.5.1.1 GO:0004067 ... P0A962 31363102
    518156 6nxd:A (1.9) BS01 ASN 3.5.1.1 GO:0004067 ... P0A962 31363102
    518157 6nxd:B (1.9) BS01 ASN 3.5.1.1 GO:0004067 ... P0A962 31363102
    518158 6nxd:C (1.9) BS01 ASN 3.5.1.1 GO:0004067 ... P0A962 31363102
    518159 6nxd:D (1.9) BS01 ASN 3.5.1.1 GO:0004067 ... P0A962 31363102
    518160 6nxg:A (1.6) BS01 MG 2.3.1.97 GO:0004379 ... A5K1A2 31850752
    518161 6nxg:A (1.6) BS02 L7Y 2.3.1.97 GO:0004379 ... A5K1A2 31850752
    518162 6nxg:A (1.6) BS03 MYA 2.3.1.97 GO:0004379 ... A5K1A2 31850752
    518163 6nxg:B (1.6) BS01 MG 2.3.1.97 GO:0004379 ... A5K1A2 31850752
    518164 6nxg:B (1.6) BS02 L7Y 2.3.1.97 GO:0004379 ... A5K1A2 31850752
    518165 6nxg:B (1.6) BS03 MYA 2.3.1.97 GO:0004379 ... A5K1A2 31850752
    518166 6nxg:C (1.6) BS01 MYA 2.3.1.97 GO:0004379 ... A5K1A2 31850752
    518167 6nxg:C (1.6) BS02 MG 2.3.1.97 GO:0004379 ... A5K1A2 31850752
    518168 6nxi:A (1.61) BS01 FAD 2.7.1.180 GO:0005886 ... A5F5Y3 31350338
    518169 6nxi:A (1.61) BS02 MG 2.7.1.180 GO:0005886 ... A5F5Y3 31350338
    518170 6nxi:A (1.61) BS03 MG 2.7.1.180 GO:0005886 ... A5F5Y3 31350338
    518171 6nxj:A (1.92) BS01 FAD 2.7.1.180 GO:0005886 ... A5F5Y3 31350338
    518172 6nxj:A (1.92) BS02 MG 2.7.1.180 GO:0005886 ... A5F5Y3 31350338
    518173 6nxj:A (1.92) BS03 MG 2.7.1.180 GO:0005886 ... A5F5Y3 31350338
    518174 6nxj:B (1.92) BS01 FAD 2.7.1.180 GO:0005886 ... A5F5Y3 31350338
    518175 6nxj:B (1.92) BS02 MG 2.7.1.180 GO:0005886 ... A5F5Y3 31350338
    518176 6nxj:B (1.92) BS03 MG 2.7.1.180 GO:0005886 ... A5F5Y3 31350338
    518177 6nxz:A (1.75) BS01 D49 1.5.1.3 GO:0004146 ... P00383 31460098 MOAD: Ki=3.5uM
    518178 6ny0:A (1.4) BS01 LBA 1.5.1.3 GO:0004146 ... P00383 31460098 MOAD: Ki=4uM
    518179 6ny1:Y (4.2) BS01 dna ? N/A A0A357BT59 30718774
    518180 6ny1:Y (4.2) BS02 rna ? N/A A0A357BT59 30718774
    518181 6ny1:Y (4.2) BS03 dna ? N/A A0A357BT59 30718774
    518182 6ny2:Y (3.2) BS01 dna ? N/A A0A357BT59 30718774
    518183 6ny2:Y (3.2) BS02 dna ? N/A A0A357BT59 30718774
    518184 6ny2:Y (3.2) BS03 rna ? N/A A0A357BT59 30718774
    518185 6ny3:Y (3.7) BS01 dna ? N/A A0A357BT59 30718774
    518186 6ny3:Y (3.7) BS02 dna ? N/A A0A357BT59 30718774
    518187 6ny3:Y (3.7) BS03 rna ? N/A A0A357BT59 30718774
    518188 6ny4:A (2.33) BS01 Z3A 2.7.10.2 GO:0004672 ... P52333 30891131 MOAD: ic50~3nM
    BindingDB: IC50=3.0nM
    518189 6ny5:A (3.002) BS01 rna ? GO:0003723 ... O60059 31294800
    518190 6ny5:B (3.002) BS01 rna ? GO:0003723 ... O60059 31294800
    518191 6ny6:B (3.74) BS01 rna ? GO:0003735 ... P80371 31501867
    518192 6ny6:B (3.74) BS02 MG ? GO:0003735 ... P80371 31501867
    518193 6ny6:C (3.74) BS01 rna ? GO:0003676 ... P80372 31501867
    518194 6ny6:D (3.74) BS01 rna ? GO:0003723 ... P80373 31501867
    518195 6ny6:D (3.74) BS02 SF4 ? GO:0003723 ... P80373 31501867
    518196 6ny6:E (3.74) BS01 rna ? GO:0003723 ... Q5SHQ5 31501867
    518197 6ny6:F (3.74) BS01 rna ? GO:0003735 ... Q5SLP8 31501867
    518198 6ny6:G (3.74) BS01 rna ? GO:0000049 ... P17291 31501867
    518199 6ny6:H (3.74) BS01 rna ? GO:0003735 ... P0DOY9 31501867
    518200 6ny6:I (3.74) BS01 rna ? GO:0000049 ... P80374 31501867

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).