SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    518401 6o0m:A (1.75) BS01 LBM ? GO:0042981 ... P10415
    Q07817
    31160589 MOAD: Ki=0.46nM
    518402 6o0n:A (3.03) BS01 DNA 2.2.1.9 GO:0000287 ... P9WK11 32029475
    518403 6o0n:B (3.03) BS01 DNA 2.2.1.9 GO:0000287 ... P9WK11 32029475
    518404 6o0n:C (3.03) BS01 DNA 2.2.1.9 GO:0000287 ... P9WK11 32029475
    518405 6o0n:D (3.03) BS01 DNA 2.2.1.9 GO:0000287 ... P9WK11 32029475
    518406 6o0o:A (1.998) BS01 F3Q ? GO:0042981 ... P10415
    Q07817
    31160589 MOAD: Ki=5.3nM
    518407 6o0o:C (1.998) BS01 F3Q ? GO:0042981 ... P10415
    Q07817
    31160589 MOAD: Ki=5.3nM
    518408 6o0p:A (1.8) BS01 LBM ? GO:0042981 ... P10415
    Q07817
    31160589 MOAD: Ki=0.11nM
    518409 6o0q:A (1.8) BS01 BDR 3.2.2.-
    3.2.2.6
    GO:0003953 ... Q6SZW1 31439792
    518410 6o0q:B (1.8) BS01 BDR 3.2.2.-
    3.2.2.6
    GO:0003953 ... Q6SZW1 31439792
    518411 6o0w:A (1.75) BS01 A2P 3.2.2.-
    3.2.2.6
    GO:0007165 ... V9M398 31439792
    518412 6o0x:A (3.28) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 31285607
    518413 6o0x:A (3.28) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 31285607
    518414 6o0x:A (3.28) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 31285607
    518415 6o0x:A (3.28) BS04 dna 3.1.-.- GO:0003676 ... Q99ZW2 31285607
    518416 6o0y:A (3.37) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 31285607
    518417 6o0y:A (3.37) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 31285607
    518418 6o0y:A (3.37) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 31285607
    518419 6o0y:A (3.37) BS04 dna 3.1.-.- GO:0003676 ... Q99ZW2 31285607
    518420 6o0z:A (3.3) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 31285607
    518421 6o0z:A (3.3) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 31285607
    518422 6o0z:A (3.3) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 31285607
    518423 6o10:A (2.0) BS01 PLP 2.8.1.7
    3.13.1.-
    4.4.1.16
    GO:0001887 ... P77444 31248989
    518424 6o11:A (1.84) BS01 C6P 2.8.1.7
    3.13.1.-
    4.4.1.16
    GO:0001887 ... P77444 31248989
    518425 6o12:A (2.05) BS01 PLP 2.8.1.7
    3.13.1.-
    4.4.1.16
    GO:0001887 ... P77444 31248989
    518426 6o13:A (2.203) BS01 CKT 2.8.1.7
    3.13.1.-
    4.4.1.16
    GO:0001887 ... P77444 31248989
    518427 6o15:A (1.35) BS01 NAD 4.2.1.- GO:0000166 ... P39353 31697432
    518428 6o15:B (1.35) BS01 NAD 4.2.1.- GO:0000166 ... P39353 31697432
    518429 6o16:A (2.875) BS01 rna 3.6.4.13 GO:0003676 ... Q6NZL1 30910870
    518430 6o16:B (2.875) BS01 rna 3.6.4.13 GO:0003676 ... Q6NZL1 30910870
    518431 6o19:A (1.596) BS01 dna ? GO:0000981 ... O13658 31010807
    518432 6o19:A (1.596) BS02 dna ? GO:0000981 ... O13658 31010807
    518433 6o19:A (1.596) BS03 ZN ? GO:0000981 ... O13658 31010807
    518434 6o19:A (1.596) BS04 ZN ? GO:0000981 ... O13658 31010807
    518435 6o1a:A (2.6) BS01 FUL ? GO:0004553 ... A0A422MHI3 33277506
    518436 6o1a:B (2.6) BS01 FUL ? GO:0004553 ... A0A422MHI3 33277506
    518437 6o1a:C (2.6) BS01 FUL ? GO:0004553 ... A0A422MHI3 33277506
    518438 6o1a:D (2.6) BS01 FUL ? GO:0004553 ... A0A422MHI3 33277506
    518439 6o1c:A (2.6) BS01 JFZ 3.2.1.51 GO:0004553 ... A0A422MHI3 33277506
    518440 6o1c:B (2.6) BS01 JFZ 3.2.1.51 GO:0004553 ... A0A422MHI3 33277506
    518441 6o1c:C (2.6) BS01 JFZ 3.2.1.51 GO:0004553 ... A0A422MHI3 33277506
    518442 6o1c:D (2.6) BS01 JFZ 3.2.1.51 GO:0004553 ... A0A422MHI3 33277506
    518443 6o1c:E (2.6) BS01 JFZ 3.2.1.51 GO:0004553 ... A0A422MHI3 33277506
    518444 6o1c:F (2.6) BS01 JFZ 3.2.1.51 GO:0004553 ... A0A422MHI3 33277506
    518445 6o1c:G (2.6) BS01 JFZ 3.2.1.51 GO:0004553 ... A0A422MHI3 33277506
    518446 6o1c:H (2.6) BS01 JFZ 3.2.1.51 GO:0004553 ... A0A422MHI3 33277506
    518447 6o1d:A (3.395) BS01 dna ? GO:0000132 ... P49450 31127102
    518448 6o1d:A (3.395) BS02 dna ? GO:0000132 ... P49450 31127102
    518449 6o1d:B (3.395) BS01 dna ? GO:0000781 ... P62805 31127102
    518450 6o1d:B (3.395) BS02 dna ? GO:0000781 ... P62805 31127102
    518451 6o1d:C (3.395) BS01 dna ? GO:0000786 ... P04908 31127102
    518452 6o1d:C (3.395) BS02 dna ? GO:0000786 ... P04908 31127102
    518453 6o1d:D (3.395) BS01 dna ? GO:0000786 ... P06899 31127102
    518454 6o1d:D (3.395) BS02 dna ? GO:0000786 ... P06899 31127102
    518455 6o1d:E (3.395) BS01 dna ? GO:0000132 ... P49450 31127102
    518456 6o1d:E (3.395) BS02 dna ? GO:0000132 ... P49450 31127102
    518457 6o1d:F (3.395) BS01 dna ? GO:0000781 ... P62805 31127102
    518458 6o1d:F (3.395) BS02 dna ? GO:0000781 ... P62805 31127102
    518459 6o1d:G (3.395) BS01 dna ? GO:0000786 ... P04908 31127102
    518460 6o1d:G (3.395) BS02 dna ? GO:0000786 ... P04908 31127102
    518461 6o1d:H (3.395) BS01 dna ? GO:0000786 ... P06899 31127102
    518462 6o1d:H (3.395) BS02 dna ? GO:0000786 ... P06899 31127102
    518463 6o1e:A (2.41) BS01 ZN ? GO:0008270 ... Q14149 30850548
    518464 6o1e:A (2.41) BS02 ANP ? GO:0008270 ... Q14149 30850548
    518465 6o1g:A (2.2) BS01 7SD 3.4.21.34 GO:0004252 ... P03952 30876891 MOAD: ic50=0.001uM
    BindingDB: IC50=0.2nM
    518466 6o1h:A (1.64) BS01 F9F 4.2.1.20 GO:0000162 ... P00929 N/A
    518467 6o1h:B (1.64) BS01 HVK 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    518468 6o1h:B (1.64) BS02 1D0 4.2.1.20 GO:0000162 ... P0A2K1 N/A
    518469 6o1j:A (2.0) BS01 FUL 3.2.1.51 GO:0004553 ... A0A422MHI3 33277506
    518470 6o1j:B (2.0) BS01 FUL 3.2.1.51 GO:0004553 ... A0A422MHI3 33277506
    518471 6o1j:C (2.0) BS01 FUL 3.2.1.51 GO:0004553 ... A0A422MHI3 33277506
    518472 6o1j:D (2.0) BS01 FUL 3.2.1.51 GO:0004553 ... A0A422MHI3 33277506
    518473 6o1j:E (2.0) BS01 FUL 3.2.1.51 GO:0004553 ... A0A422MHI3 33277506
    518474 6o1j:F (2.0) BS01 FUL 3.2.1.51 GO:0004553 ... A0A422MHI3 33277506
    518475 6o1j:G (2.0) BS01 FUL 3.2.1.51 GO:0004553 ... A0A422MHI3 33277506
    518476 6o1j:H (2.0) BS01 FUL 3.2.1.51 GO:0004553 ... A0A422MHI3 33277506
    518477 6o1k:A (3.13) BS01 rna 3.1.11.2 GO:0003824 ... Q51380 30758287
    518478 6o1k:A (3.13) BS02 rna 3.1.11.2 GO:0003824 ... Q51380 30758287
    518479 6o1k:B (3.13) BS01 rna 3.1.11.2 GO:0003824 ... Q51380 30758287
    518480 6o1k:B (3.13) BS02 rna 3.1.11.2 GO:0003824 ... Q51380 30758287
    518481 6o1k:C (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518482 6o1k:D (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518483 6o1k:E (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518484 6o1k:F (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518485 6o1k:G (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518486 6o1k:H (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518487 6o1k:I (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518488 6o1k:J (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518489 6o1k:K (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518490 6o1k:L (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518491 6o1k:M (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518492 6o1k:N (3.13) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518493 6o1l:A (3.37) BS01 rna 3.1.11.2 GO:0003824 ... Q51380 30758287
    518494 6o1l:A (3.37) BS02 rna 3.1.11.2 GO:0003824 ... Q51380 30758287
    518495 6o1l:B (3.37) BS01 rna 3.1.11.2 GO:0003824 ... Q51380 30758287
    518496 6o1l:B (3.37) BS02 rna 3.1.11.2 GO:0003824 ... Q51380 30758287
    518497 6o1l:C (3.37) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518498 6o1l:D (3.37) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518499 6o1l:E (3.37) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518500 6o1l:F (3.37) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518501 6o1l:G (3.37) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518502 6o1l:H (3.37) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518503 6o1l:I (3.37) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518504 6o1l:J (3.37) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518505 6o1l:K (3.37) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518506 6o1l:L (3.37) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518507 6o1l:M (3.37) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518508 6o1l:N (3.37) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518509 6o1l:R (3.37) BS01 rna 3.1.11.2 GO:0003824 ... Q51380 30758287
    518510 6o1m:A (3.15) BS01 rna 3.1.11.2 GO:0003824 ... Q51380 30758287
    518511 6o1m:A (3.15) BS02 rna 3.1.11.2 GO:0003824 ... Q51380 30758287
    518512 6o1m:B (3.15) BS01 rna 3.1.11.2 GO:0003824 ... Q51380 30758287
    518513 6o1m:B (3.15) BS02 rna 3.1.11.2 GO:0003824 ... Q51380 30758287
    518514 6o1m:C (3.15) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518515 6o1m:D (3.15) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518516 6o1m:E (3.15) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518517 6o1m:F (3.15) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518518 6o1m:G (3.15) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518519 6o1m:H (3.15) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518520 6o1m:I (3.15) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518521 6o1m:J (3.15) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518522 6o1m:K (3.15) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518523 6o1m:L (3.15) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518524 6o1m:M (3.15) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518525 6o1m:N (3.15) BS01 rna ? GO:0003723 ... Q9HUM0 30758287
    518526 6o1m:R (3.15) BS01 rna 3.1.11.2 GO:0003824 ... Q51380 30758287
    518527 6o1m:S (3.15) BS01 rna 3.1.11.2 GO:0003824 ... Q51380 30758287
    518528 6o1o:B (3.8) BS01 rna N/A N/A N/A 31278272
    518529 6o1o:C (3.8) BS01 rna N/A N/A N/A 31278272
    518530 6o1o:C (3.8) BS02 rna N/A N/A N/A 31278272
    518531 6o1o:D (3.8) BS01 rna N/A N/A N/A 31278272
    518532 6o1o:D (3.8) BS02 rna N/A N/A N/A 31278272
    518533 6o1o:E (3.8) BS01 rna N/A N/A N/A 31278272
    518534 6o1o:E (3.8) BS02 rna N/A N/A N/A 31278272
    518535 6o1o:F (3.8) BS01 rna N/A N/A N/A 31278272
    518536 6o1o:F (3.8) BS02 rna N/A N/A N/A 31278272
    518537 6o1o:G (3.8) BS01 rna N/A N/A N/A 31278272
    518538 6o1o:G (3.8) BS02 rna N/A N/A N/A 31278272
    518539 6o1o:H (3.8) BS01 rna N/A N/A N/A 31278272
    518540 6o1o:H (3.8) BS02 rna N/A N/A N/A 31278272
    518541 6o1o:I (3.8) BS01 rna N/A N/A N/A 31278272
    518542 6o1o:J (3.8) BS01 rna N/A N/A N/A 31278272
    518543 6o1o:K (3.8) BS01 rna N/A N/A N/A 31278272
    518544 6o1s:E (1.7) BS01 7SD 3.4.21.34 GO:0004252 ... P03952 30876891 BindingDB: IC50=0.2nM
    518545 6o1t:A (2.3) BS01 CA ? GO:0001530 ... P79125 30978191
    518546 6o1t:A (2.3) BS02 OLA ? GO:0001530 ... P79125 30978191
    518547 6o1t:B (2.3) BS01 CA ? GO:0001530 ... P79125 30978191
    518548 6o1t:B (2.3) BS02 OLA ? GO:0001530 ... P79125 30978191
    518549 6o1v:A (3.2) BS01 peptide 5.6.1.6 GO:0005254 ... P13569 31221859
    518550 6o1v:A (3.2) BS02 LJP 5.6.1.6 GO:0005254 ... P13569 31221859
    518551 6o1v:A (3.2) BS03 MG 5.6.1.6 GO:0005254 ... P13569 31221859
    518552 6o1v:A (3.2) BS04 MG 5.6.1.6 GO:0005254 ... P13569 31221859
    518553 6o1v:A (3.2) BS05 ATP 5.6.1.6 GO:0005254 ... P13569 31221859
    518554 6o1v:A (3.2) BS06 ATP 5.6.1.6 GO:0005254 ... P13569 31221859
    518555 6o1w:A (2.2) BS01 BGC ? GO:0000166 ... Q1PLI0 N/A
    518556 6o1w:A (2.2) BS02 BGC ? GO:0000166 ... Q1PLI0 N/A
    518557 6o1w:B (2.2) BS01 BGC ? GO:0000166 ... Q1PLI0 N/A
    518558 6o1w:B (2.2) BS02 BGC ? GO:0000166 ... Q1PLI0 N/A
    518559 6o1x:A (2.46) BS01 BGC ? GO:0000166 ... Q1PLI0 N/A
    518560 6o1x:A (2.46) BS02 BGC ? GO:0000166 ... Q1PLI0 N/A
    518561 6o1x:A (2.46) BS03 AGS ? GO:0000166 ... Q1PLI0 N/A
    518562 6o1y:A (2.7) BS01 ATP ? GO:0000166 ... Q1PLI0 N/A
    518563 6o1y:A (2.7) BS02 BGC ? GO:0000166 ... Q1PLI0 N/A
    518564 6o20:F (3.3) BS01 peptide ? GO:0000922 ... P62157 30975749
    518565 6o20:F (3.3) BS02 CA ? GO:0000922 ... P62157 30975749
    518566 6o20:F (3.3) BS03 CA ? GO:0000922 ... P62157 30975749
    518567 6o20:F (3.3) BS04 CA ? GO:0000922 ... P62157 30975749
    518568 6o20:F (3.3) BS05 CA ? GO:0000922 ... P62157 30975749
    518569 6o21:A (1.15) BS01 peptide 3.4.21.- GO:0004252 ... Q9Y5K2 31058493
    518570 6o23:A (2.0) BS01 peptide N/A N/A N/A 32451496
    518571 6o23:B (2.0) BS01 peptide N/A N/A N/A 32451496
    518572 6o23:C (2.0) BS01 peptide N/A N/A N/A 32451496
    518573 6o23:D (2.0) BS01 peptide N/A N/A N/A 32451496
    518574 6o24:A (1.4) BS01 peptide N/A N/A N/A 32451496
    518575 6o24:B (1.4) BS01 peptide N/A N/A N/A 32451496
    518576 6o25:A (2.9) BS01 peptide N/A N/A N/A 32451496
    518577 6o25:E (2.9) BS01 peptide N/A N/A N/A 32451496
    518578 6o25:I (2.9) BS01 peptide N/A N/A N/A 32451496
    518579 6o25:J (2.9) BS01 peptide N/A N/A N/A 32451496
    518580 6o26:A (1.8) BS01 peptide N/A N/A N/A 32451496
    518581 6o26:B (1.8) BS01 peptide N/A N/A N/A 32451496
    518582 6o28:A (1.93) BS01 peptide N/A N/A N/A 32451496
    518583 6o28:B (1.93) BS01 peptide N/A N/A N/A 32451496
    518584 6o28:C (1.93) BS01 peptide N/A N/A N/A 32451496
    518585 6o28:D (1.93) BS01 peptide N/A N/A N/A 32451496
    518586 6o29:A (2.4) BS01 peptide N/A N/A N/A 32451496
    518587 6o29:B (2.4) BS01 peptide N/A N/A N/A 32451496
    518588 6o29:B (2.4) BS02 peptide N/A N/A N/A 32451496
    518589 6o29:H (2.4) BS01 peptide N/A N/A N/A 32451496
    518590 6o29:L (2.4) BS01 peptide N/A N/A N/A 32451496
    518591 6o29:L (2.4) BS02 peptide N/A N/A N/A 32451496
    518592 6o2a:A (2.15) BS01 peptide N/A N/A N/A 32451496
    518593 6o2a:C (2.15) BS01 peptide N/A N/A N/A 32451496
    518594 6o2a:D (2.15) BS01 peptide N/A N/A N/A 32451496
    518595 6o2a:H (2.15) BS01 peptide N/A N/A N/A 32451496
    518596 6o2a:I (2.15) BS01 peptide N/A N/A N/A 32451496
    518597 6o2a:O (2.15) BS01 peptide N/A N/A N/A 32451496
    518598 6o2a:P (2.15) BS01 peptide N/A N/A N/A 32451496
    518599 6o2b:A (2.1) BS01 peptide N/A N/A N/A 32451496
    518600 6o2b:B (2.1) BS01 peptide N/A N/A N/A 32451496

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).