SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    519401 6o6v:A (2.35) BS02 rna ? N/A B6YWC3 31326273
    519402 6o6v:B (2.35) BS01 rna ? N/A B6YWC3 31326273
    519403 6o6v:B (2.35) BS02 rna ? N/A B6YWC3 31326273
    519404 6o6x:A (2.11) BS01 rna ? N/A B6YWC3 31326273
    519405 6o6x:A (2.11) BS02 rna ? N/A B6YWC3 31326273
    519406 6o6x:B (2.11) BS01 rna ? N/A B6YWC3 31326273
    519407 6o6x:B (2.11) BS02 rna ? N/A B6YWC3 31326273
    519408 6o6y:A (1.96) BS01 ACK ? N/A B6YWC3 31326273
    519409 6o6y:A (1.96) BS02 LQJ ? N/A B6YWC3 31326273
    519410 6o6y:A (1.96) BS03 LQJ ? N/A B6YWC3 31326273
    519411 6o6y:B (1.96) BS01 LQJ ? N/A B6YWC3 31326273
    519412 6o6y:B (1.96) BS02 ACK ? N/A B6YWC3 31326273
    519413 6o6y:B (1.96) BS03 LQJ ? N/A B6YWC3 31326273
    519414 6o6z:A (2.1) BS01 LQJ ? N/A B6YWC3 31326273
    519415 6o6z:A (2.1) BS02 LQJ ? N/A B6YWC3 31326273
    519416 6o6z:B (2.1) BS01 LQJ ? N/A B6YWC3 31326273
    519417 6o6z:B (2.1) BS02 LQJ ? N/A B6YWC3 31326273
    519418 6o70:A (2.3) BS01 ACK ? N/A B6YWC3 31326273
    519419 6o70:A (2.3) BS02 LQJ ? N/A B6YWC3 31326273
    519420 6o70:A (2.3) BS03 LQJ ? N/A B6YWC3 31326273
    519421 6o70:B (2.3) BS01 LQJ ? N/A B6YWC3 31326273
    519422 6o70:B (2.3) BS02 ACK ? N/A B6YWC3 31326273
    519423 6o70:B (2.3) BS03 LQJ ? N/A B6YWC3 31326273
    519424 6o71:A (2.55) BS01 dna ? N/A B6YWC3 31326273
    519425 6o71:A (2.55) BS02 dna ? N/A B6YWC3 31326273
    519426 6o71:B (2.55) BS01 dna ? N/A B6YWC3 31326273
    519427 6o71:B (2.55) BS02 dna ? N/A B6YWC3 31326273
    519428 6o72:A (3.0) BS01 Y01 N/A GO:0005216 ... N/A 31488702
    519429 6o72:A (3.0) BS02 T14 N/A GO:0005216 ... N/A 31488702
    519430 6o72:B (3.0) BS01 Y01 N/A GO:0005216 ... N/A 31488702
    519431 6o72:B (3.0) BS02 T14 N/A GO:0005216 ... N/A 31488702
    519432 6o72:C (3.0) BS01 Y01 N/A GO:0005216 ... N/A 31488702
    519433 6o72:C (3.0) BS02 T14 N/A GO:0005216 ... N/A 31488702
    519434 6o72:D (3.0) BS01 Y01 N/A GO:0005216 ... N/A 31488702
    519435 6o72:D (3.0) BS02 T14 N/A GO:0005216 ... N/A 31488702
    519436 6o74:A (2.71) BS01 ANP 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519437 6o74:A (2.71) BS02 ANP 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519438 6o74:A (2.71) BS03 MN 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519439 6o74:A (2.71) BS04 MN 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519440 6o74:A (2.71) BS05 MN 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519441 6o75:A (2.6) BS01 rna 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519442 6o75:A (2.6) BS02 rna 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519443 6o75:A (2.6) BS03 MN 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519444 6o75:A (2.6) BS04 MN 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519445 6o77:A (3.2) BS01 CA N/A GO:0005216 ... N/A 31488702
    519446 6o77:A (3.2) BS02 Y01 N/A GO:0005216 ... N/A 31488702
    519447 6o77:A (3.2) BS03 Y01 N/A GO:0005216 ... N/A 31488702
    519448 6o77:A (3.2) BS04 Y01 N/A GO:0005216 ... N/A 31488702
    519449 6o77:B (3.2) BS01 CA N/A GO:0005216 ... N/A 31488702
    519450 6o77:B (3.2) BS02 Y01 N/A GO:0005216 ... N/A 31488702
    519451 6o77:B (3.2) BS03 Y01 N/A GO:0005216 ... N/A 31488702
    519452 6o77:B (3.2) BS04 Y01 N/A GO:0005216 ... N/A 31488702
    519453 6o77:C (3.2) BS01 CA N/A GO:0005216 ... N/A 31488702
    519454 6o77:C (3.2) BS02 Y01 N/A GO:0005216 ... N/A 31488702
    519455 6o77:C (3.2) BS03 Y01 N/A GO:0005216 ... N/A 31488702
    519456 6o77:C (3.2) BS04 Y01 N/A GO:0005216 ... N/A 31488702
    519457 6o77:D (3.2) BS01 Y01 N/A GO:0005216 ... N/A 31488702
    519458 6o77:D (3.2) BS02 CA N/A GO:0005216 ... N/A 31488702
    519459 6o77:D (3.2) BS03 Y01 N/A GO:0005216 ... N/A 31488702
    519460 6o77:D (3.2) BS04 Y01 N/A GO:0005216 ... N/A 31488702
    519461 6o78:A (2.8) BS01 rna 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519462 6o78:A (2.8) BS02 MN 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519463 6o78:A (2.8) BS03 MN 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519464 6o78:B (2.8) BS01 rna ? GO:0003723 ... B6YWC1 31326272
    519465 6o79:A (3.0) BS01 rna 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519466 6o7b:A (2.4) BS01 rna 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519467 6o7b:A (2.4) BS02 rna 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519468 6o7b:B (2.4) BS01 rna ? GO:0003723 ... B6YWC1 31326272
    519469 6o7c:A (1.85) BS01 CA ? GO:0006811 ... Q5H8A6 31420535
    519470 6o7c:A (1.85) BS02 CA ? GO:0006811 ... Q5H8A6 31420535
    519471 6o7c:A (1.85) BS03 CA ? GO:0006811 ... Q5H8A6 31420535
    519472 6o7d:A (2.81) BS01 ATP 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519473 6o7d:A (2.81) BS02 MN 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519474 6o7d:A (2.81) BS03 MN 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519475 6o7e:A (3.2) BS01 rna 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519476 6o7e:A (3.2) BS02 ZN 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519477 6o7e:A (3.2) BS03 ANP 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519478 6o7e:A (3.2) BS04 ANP 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519479 6o7e:A (3.2) BS05 MN 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519480 6o7e:A (3.2) BS06 MN 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519481 6o7e:B (3.2) BS01 rna ? GO:0003723 ... B6YWB9 31326272
    519482 6o7e:C (3.2) BS01 rna ? GO:0003723 ... B6YWC0 31326272
    519483 6o7e:C (3.2) BS02 rna ? GO:0003723 ... B6YWC0 31326272
    519484 6o7e:C (3.2) BS03 ZN ? GO:0003723 ... B6YWC0 31326272
    519485 6o7e:D (3.2) BS01 rna ? GO:0003723 ... B6YWC0 31326272
    519486 6o7e:D (3.2) BS02 rna ? GO:0003723 ... B6YWC0 31326272
    519487 6o7e:D (3.2) BS03 ZN ? GO:0003723 ... B6YWC0 31326272
    519488 6o7e:E (3.2) BS01 rna ? GO:0003723 ... B6YWC1 31326272
    519489 6o7e:E (3.2) BS02 rna ? GO:0003723 ... B6YWC1 31326272
    519490 6o7e:E (3.2) BS03 ANP ? GO:0003723 ... B6YWC1 31326272
    519491 6o7e:Y (3.2) BS01 rna ? GO:0003723 ... B6YWC2 31326272
    519492 6o7e:Y (3.2) BS02 rna ? GO:0003723 ... B6YWC2 31326272
    519493 6o7f:A (2.303) BS01 NKV 1.4.1.1 GO:0000166 ... P9WQB1 N/A
    519494 6o7g:B (-1.00) BS01 peptide 2.1.1.364 N/A O14686 31127101
    519495 6o7g:B (-1.00) BS02 ZN 2.1.1.364 N/A O14686 31127101
    519496 6o7g:B (-1.00) BS03 ZN 2.1.1.364 N/A O14686 31127101
    519497 6o7h:A (2.9) BS01 rna 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519498 6o7h:A (2.9) BS02 ZN 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519499 6o7h:A (2.9) BS03 G 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519500 6o7h:B (2.9) BS01 rna ? GO:0003723 ... B6YWB9 31326272
    519501 6o7h:C (2.9) BS01 rna ? GO:0003723 ... B6YWC0 31326272
    519502 6o7h:C (2.9) BS02 rna ? GO:0003723 ... B6YWC0 31326272
    519503 6o7h:C (2.9) BS03 ZN ? GO:0003723 ... B6YWC0 31326272
    519504 6o7h:D (2.9) BS01 rna ? GO:0003723 ... B6YWC0 31326272
    519505 6o7h:D (2.9) BS02 rna ? GO:0003723 ... B6YWC0 31326272
    519506 6o7h:D (2.9) BS03 ZN ? GO:0003723 ... B6YWC0 31326272
    519507 6o7h:E (2.9) BS01 rna ? GO:0003723 ... B6YWC1 31326272
    519508 6o7h:E (2.9) BS02 rna ? GO:0003723 ... B6YWC1 31326272
    519509 6o7h:E (2.9) BS03 rna ? GO:0003723 ... B6YWC1 31326272
    519510 6o7h:F (2.9) BS01 rna ? GO:0003723 ... B6YWC2 31326272
    519511 6o7h:F (2.9) BS02 rna ? GO:0003723 ... B6YWC2 31326272
    519512 6o7i:A (3.2) BS01 rna 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519513 6o7i:A (3.2) BS02 rna 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519514 6o7i:A (3.2) BS03 ZN 2.7.7.-
    3.1.-.-
    GO:0004519 ... B6YWB8 31326272
    519515 6o7i:B (3.2) BS01 rna ? GO:0003723 ... B6YWB9 31326272
    519516 6o7i:C (3.2) BS01 rna ? GO:0003723 ... B6YWC0 31326272
    519517 6o7i:C (3.2) BS02 rna ? GO:0003723 ... B6YWC0 31326272
    519518 6o7i:C (3.2) BS03 ZN ? GO:0003723 ... B6YWC0 31326272
    519519 6o7i:D (3.2) BS01 rna ? GO:0003723 ... B6YWC0 31326272
    519520 6o7i:D (3.2) BS02 rna ? GO:0003723 ... B6YWC0 31326272
    519521 6o7i:D (3.2) BS03 ZN ? GO:0003723 ... B6YWC0 31326272
    519522 6o7i:E (3.2) BS01 rna ? GO:0003723 ... B6YWC1 31326272
    519523 6o7i:E (3.2) BS02 rna ? GO:0003723 ... B6YWC1 31326272
    519524 6o7i:F (3.2) BS01 rna ? GO:0003723 ... B6YWC2 31326272
    519525 6o7i:K (3.2) BS01 rna ? GO:0003723 ... B6YWC0 31326272
    519526 6o7i:K (3.2) BS02 rna ? GO:0003723 ... B6YWC0 31326272
    519527 6o7i:K (3.2) BS03 ZN ? GO:0003723 ... B6YWC0 31326272
    519528 6o7k:1 (4.2) BS01 rna ? GO:0003735 ... P0A7T7 31108498
    519529 6o7k:2 (4.2) BS01 rna ? GO:0003735 ... P68679 31108498
    519530 6o7k:3 (4.2) BS01 rna ? GO:0000028 ... P0A7U7 31108498
    519531 6o7k:5 (4.2) BS01 rna ? GO:0003723 ... Q5SHR1 31108498
    519532 6o7k:P (4.2) BS01 rna ? GO:0000028 ... P0AG63 31108498
    519533 6o7k:f (4.2) BS01 rna ? GO:0003743 ... P0A705 31108498
    519534 6o7k:f (4.2) BS02 rna ? GO:0003743 ... P0A705 31108498
    519535 6o7k:h (4.2) BS01 rna ? GO:0003676 ... P0A7V3 31108498
    519536 6o7k:j (4.2) BS01 rna ? GO:0000028 ... P0A7V0 31108498
    519537 6o7k:k (4.2) BS01 rna ? GO:0000028 ... P0A7W1 31108498
    519538 6o7k:l (4.2) BS01 rna ? GO:0000028 ... P0A7V8 31108498
    519539 6o7k:m (4.2) BS01 rna ? GO:0003723 ... P02359 31108498
    519540 6o7k:n (4.2) BS01 rna ? GO:0003735 ... P02358 31108498
    519541 6o7k:o (4.2) BS01 rna ? GO:0000049 ... P0A7X3 31108498
    519542 6o7k:o (4.2) BS02 rna ? GO:0000049 ... P0A7X3 31108498
    519543 6o7k:p (4.2) BS01 rna ? GO:0000028 ... P0A7W7 31108498
    519544 6o7k:q (4.2) BS01 rna ? GO:0002181 ... P0A7R9 31108498
    519545 6o7k:r (4.2) BS01 rna ? GO:0000049 ... P0A7R5 31108498
    519546 6o7k:s (4.2) BS01 rna ? GO:0000049 ... P0A7S9 31108498
    519547 6o7k:t (4.2) BS01 rna ? GO:0000049 ... P0A7S3 31108498
    519548 6o7k:u (4.2) BS01 rna ? GO:0000028 ... P0ADZ4 31108498
    519549 6o7k:w (4.2) BS01 rna ? GO:0000028 ... P0AG59 31108498
    519550 6o7k:y (4.2) BS01 rna ? GO:0000028 ... P0A7T3 31108498
    519551 6o7k:z (4.2) BS01 rna ? GO:0003723 ... P0A7U3 31108498
    519552 6o7l:A (2.26) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 31146522
    519553 6o7l:A (2.26) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 31146522
    519554 6o7l:B (2.26) BS01 CLF 1.18.6.1 GO:0005524 ... P07329 31146522
    519555 6o7l:B (2.26) BS02 FE 1.18.6.1 GO:0005524 ... P07329 31146522
    519556 6o7l:B (2.26) BS03 FE 1.18.6.1 GO:0005524 ... P07329 31146522
    519557 6o7l:C (2.26) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 31146522
    519558 6o7l:C (2.26) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 31146522
    519559 6o7l:D (2.26) BS01 FE 1.18.6.1 GO:0005524 ... P07329 31146522
    519560 6o7l:D (2.26) BS02 FE 1.18.6.1 GO:0005524 ... P07329 31146522
    519561 6o7l:D (2.26) BS03 CLF 1.18.6.1 GO:0005524 ... P07329 31146522
    519562 6o7m:A (1.4) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 31146522
    519563 6o7m:A (1.4) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 31146522
    519564 6o7m:B (1.4) BS01 CLF 1.18.6.1 GO:0005524 ... P07329 31146522
    519565 6o7m:B (1.4) BS02 FE 1.18.6.1 GO:0005524 ... P07329 31146522
    519566 6o7m:B (1.4) BS03 FE 1.18.6.1 GO:0005524 ... P07329 31146522
    519567 6o7m:C (1.4) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 31146522
    519568 6o7m:C (1.4) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 31146522
    519569 6o7m:D (1.4) BS01 FE 1.18.6.1 GO:0005524 ... P07329 31146522
    519570 6o7m:D (1.4) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 31146522
    519571 6o7m:D (1.4) BS03 FE 1.18.6.1 GO:0005524 ... P07329 31146522
    519572 6o7n:A (1.75) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 31146522
    519573 6o7n:A (1.75) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 31146522
    519574 6o7n:B (1.75) BS01 CLF 1.18.6.1 GO:0005524 ... P07329 31146522
    519575 6o7n:B (1.75) BS02 FE 1.18.6.1 GO:0005524 ... P07329 31146522
    519576 6o7n:B (1.75) BS03 FE 1.18.6.1 GO:0005524 ... P07329 31146522
    519577 6o7n:C (1.75) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 31146522
    519578 6o7n:C (1.75) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 31146522
    519579 6o7n:D (1.75) BS01 FE 1.18.6.1 GO:0005524 ... P07329 31146522
    519580 6o7n:D (1.75) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 31146522
    519581 6o7n:D (1.75) BS03 FE 1.18.6.1 GO:0005524 ... P07329 31146522
    519582 6o7o:A (1.89) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 31146522
    519583 6o7o:A (1.89) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 31146522
    519584 6o7o:B (1.89) BS01 CLF 1.18.6.1 GO:0005524 ... P07329 31146522
    519585 6o7o:B (1.89) BS02 FE 1.18.6.1 GO:0005524 ... P07329 31146522
    519586 6o7o:B (1.89) BS03 FE 1.18.6.1 GO:0005524 ... P07329 31146522
    519587 6o7o:C (1.89) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 31146522
    519588 6o7o:C (1.89) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 31146522
    519589 6o7o:D (1.89) BS01 FE 1.18.6.1 GO:0005524 ... P07329 31146522
    519590 6o7o:D (1.89) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 31146522
    519591 6o7o:D (1.89) BS03 FE 1.18.6.1 GO:0005524 ... P07329 31146522
    519592 6o7p:A (1.7) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 31146522
    519593 6o7p:A (1.7) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 31146522
    519594 6o7p:B (1.7) BS01 CLF 1.18.6.1 GO:0005524 ... P07329 31146522
    519595 6o7p:B (1.7) BS02 FE 1.18.6.1 GO:0005524 ... P07329 31146522
    519596 6o7p:B (1.7) BS03 FE 1.18.6.1 GO:0005524 ... P07329 31146522
    519597 6o7p:C (1.7) BS01 ICS 1.18.6.1 GO:0005524 ... P07328 31146522
    519598 6o7p:C (1.7) BS02 CLF 1.18.6.1 GO:0005524 ... P07328 31146522
    519599 6o7p:D (1.7) BS01 FE 1.18.6.1 GO:0005524 ... P07329 31146522
    519600 6o7p:D (1.7) BS02 CLF 1.18.6.1 GO:0005524 ... P07329 31146522

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).