SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    5001 1bl5:A (2.5) BS01 AKG 1.1.1.42 GO:0000287 ... P08200 9783749
    5002 1bl5:A (2.5) BS02 NAP 1.1.1.42 GO:0000287 ... P08200 9783749
    5003 1bl6:A (2.5) BS01 SB6 2.7.11.24 GO:0000165 ... Q16539 9753691 BindingDB: IC50=160nM
    5004 1bl7:A (2.5) BS01 SB4 2.7.11.24 GO:0000165 ... Q16539 9753691 BindingDB: IC50=19nM
    5005 1bl9:A (2.9) BS01 HEC 1.7.2.1
    1.7.99.1
    GO:0009055 ... P24474 9760233
    5006 1bl9:A (2.9) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P24474 9760233
    5007 1bl9:B (2.9) BS01 HEC 1.7.2.1
    1.7.99.1
    GO:0009055 ... P24474 9760233
    5008 1bl9:B (2.9) BS02 DHE 1.7.2.1
    1.7.99.1
    GO:0009055 ... P24474 9760233
    5009 1blc:A (2.2) BS01 CEM 3.5.2.6 GO:0008800 ... P00807 1569569
    5010 1blc:A (2.2) BS02 TEM 3.5.2.6 GO:0008800 ... P00807 1569569
    5011 1blf:A (2.8) BS01 MAN 3.4.21.- GO:0001817 ... P24627 9398529
    5012 1blf:A (2.8) BS02 FE 3.4.21.- GO:0001817 ... P24627 9398529
    5013 1blf:A (2.8) BS03 FE 3.4.21.- GO:0001817 ... P24627 9398529
    5014 1blf:A (2.8) BS04 CO3 3.4.21.- GO:0001817 ... P24627 9398529
    5015 1blf:A (2.8) BS05 CO3 3.4.21.- GO:0001817 ... P24627 9398529
    5016 1blh:A (2.3) BS01 FOS 3.5.2.6 GO:0008800 ... P00807 8230196
    5017 1bli:A (1.9) BS01 CA 3.2.1.1 GO:0004553 ... P06278 9551551
    5018 1bli:A (1.9) BS02 CA 3.2.1.1 GO:0004553 ... P06278 9551551
    5019 1bli:A (1.9) BS03 CA 3.2.1.1 GO:0004553 ... P06278 9551551
    5020 1bli:A (1.9) BS04 NA 3.2.1.1 GO:0004553 ... P06278 9551551
    5021 1bll:E (2.4) BS01 peptide 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 8357796
    5022 1bll:E (2.4) BS02 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 8357796
    5023 1bll:E (2.4) BS03 ZN 3.4.11.1
    3.4.11.5
    3.4.13.23
    GO:0004177 ... P00727 8357796
    5024 1bls:A (2.3) BS01 IPP 3.5.2.6 GO:0008800 ... P05364 8204611
    5025 1bls:B (2.3) BS01 IPP 3.5.2.6 GO:0008800 ... P05364 8204611
    5026 1blu:A (2.1) BS01 SF4 ? GO:0005737 ... P00208 8880900
    5027 1blu:A (2.1) BS02 SF4 ? GO:0005737 ... P00208 8880900
    5028 1blv:A (-1.00) BS01 HEM ? GO:0020037 ... P00173 9836603
    5029 1blx:A (1.9) BS01 CA 2.7.11.22 GO:0000082 ... Q00534 9751051
    5030 1blz:A (1.45) BS01 FE 1.21.3.1 GO:0005506 ... P05326 9194566
    5031 1blz:A (1.45) BS02 ACV 1.21.3.1 GO:0005506 ... P05326 9194566
    5032 1blz:A (1.45) BS03 NO 1.21.3.1 GO:0005506 ... P05326 9194566
    5033 1bm1:A (3.5) BS01 RET ? GO:0005216 ... P02945 10393291
    5034 1bm2:A (2.1) BS01 peptide ? N/A P62993 10090780
    5035 1bm6:A (-1.00) BS01 ZN 3.4.24.17 GO:0004222 ... P08254 9760240
    5036 1bm6:A (-1.00) BS02 ZN 3.4.24.17 GO:0004222 ... P08254 9760240
    5037 1bm6:A (-1.00) BS03 CA 3.4.24.17 GO:0004222 ... P08254 9760240
    5038 1bm6:A (-1.00) BS04 CA 3.4.24.17 GO:0004222 ... P08254 9760240
    5039 1bm6:A (-1.00) BS05 HAV 3.4.24.17 GO:0004222 ... P08254 9760240
    5040 1bm6:A (-1.00) BS06 MSB 3.4.24.17 GO:0004222 ... P08254 9760240
    5041 1bm7:A (2.0) BS01 FLF ? GO:0001523 ... P02766 9789022 MOAD: Kd=30nM
    BindingDB: IC50=2900nM
    5042 1bm7:B (2.0) BS01 FLF ? GO:0001523 ... P02766 9789022 MOAD: Kd=30nM
    BindingDB: IC50=2900nM
    5043 1bma:A (1.8) BS01 CA 3.4.21.36 GO:0004252 ... P00772 7604279
    5044 1bma:A (1.8) BS02 0QH 3.4.21.36 GO:0004252 ... P00772 7604279 MOAD: Ki=26uM
    5045 1bmb:A (1.8) BS01 peptide ? N/A P62993 10090780
    5046 1bmc:A (2.5) BS01 ZN 3.5.2.6 GO:0008270 ... P04190 7588620
    5047 1bmd:A (1.9) BS01 NAD 1.1.1.37 GO:0003824 ... P10584 8471603
    5048 1bmd:B (1.9) BS01 NAD 1.1.1.37 GO:0003824 ... P10584 8471603
    5049 1bmf:A (2.85) BS01 ANP 3.6.1.34 GO:0005515 ... P19483 8065448
    5050 1bmf:B (2.85) BS01 ANP 3.6.1.34 GO:0005515 ... P19483 8065448
    5051 1bmf:B (2.85) BS02 ANP 3.6.1.34 GO:0005515 ... P19483 8065448
    5052 1bmf:C (2.85) BS01 ANP 3.6.1.34 GO:0005515 ... P19483 8065448
    5053 1bmf:C (2.85) BS02 ADP 3.6.1.34 GO:0005515 ... P19483 8065448
    5054 1bmf:D (2.85) BS01 ADP 7.1.2.2 GO:0005515 ... P00829 8065448
    5055 1bmf:F (2.85) BS01 ANP 7.1.2.2 GO:0005515 ... P00829 8065448
    5056 1bmk:A (2.4) BS01 SB5 2.7.11.24 GO:0000165 ... Q16539 9753691 BindingDB: IC50=25nM
    5057 1bmm:H (2.6) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 8745399
    5058 1bmm:H (2.6) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 8745399
    5059 1bmm:H (2.6) BS03 BM2 3.4.21.5 GO:0004252 ... P00734 8745399 BindingDB: IC50=390nM
    5060 1bmn:H (2.8) BS01 peptide 3.4.21.5 GO:0004252 ... P00734 8745399
    5061 1bmn:H (2.8) BS02 peptide 3.4.21.5 GO:0004252 ... P00734 8745399
    5062 1bmn:H (2.8) BS03 BM9 3.4.21.5 GO:0004252 ... P00734 8745399 BindingDB: IC50=16nM, Ki=3.6nM
    5063 1bmo:A (3.1) BS01 CA ? GO:0005509 ... P09486 9233787
    5064 1bmo:A (3.1) BS02 CA ? GO:0005509 ... P09486 9233787
    5065 1bmo:B (3.1) BS01 CA ? GO:0005509 ... P09486 9233787
    5066 1bmo:B (3.1) BS02 CA ? GO:0005509 ... P09486 9233787
    5067 1bmq:A (2.5) BS01 MNO 3.4.22.36 GO:0004197 ... P29466 9987822
    5068 1bmq:B (2.5) BS01 MNO 3.4.22.36 GO:0004197 ... P29466 9987822
    5069 1bmt:A (3.0) BS01 COB 2.1.1.13 GO:0031419 ... P13009 7992050
    5070 1bmt:B (3.0) BS01 COB 2.1.1.13 GO:0031419 ... P13009 7992050
    5071 1bmv:2 (3.0) BS01 rna ? GO:0005198 ... P23009 2749253
    5072 1bn1:A (2.1) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 9865942
    5073 1bn1:A (2.1) BS02 AL5 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 9865942 MOAD: Kd=0.46nM
    BindingDB: Kd=0.46nM
    5074 1bn3:A (2.2) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 9865942
    5075 1bn3:A (2.2) BS02 AL6 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 9865942 MOAD: Kd=0.13nM
    BindingDB: Kd=0.13nM
    5076 1bn4:A (2.1) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 9865942
    5077 1bn4:A (2.1) BS02 AL9 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 9865942 MOAD: Kd=0.49nM
    BindingDB: Kd=0.49nM
    5078 1bn5:A (1.8) BS01 CO 3.4.11.18 GO:0003723 ... P50579 9812898
    5079 1bn5:A (1.8) BS02 CO 3.4.11.18 GO:0003723 ... P50579 9812898
    5080 1bn8:A (1.8) BS01 CA 4.2.2.2 GO:0030570 ... P39116 7634076
    5081 1bnk:A (2.7) BS01 dna 3.2.2.21 GO:0003677 ... P29372 9790531
    5082 1bnk:A (2.7) BS02 dna 3.2.2.21 GO:0003677 ... P29372 9790531
    5083 1bnl:A (2.9) BS01 ZN ? N/A P39060 9724722
    5084 1bnl:B (2.9) BS01 ZN ? N/A P39060 9724722
    5085 1bnl:C (2.9) BS01 ZN ? N/A P39060 9724722
    5086 1bnl:D (2.9) BS01 ZN ? N/A P39060 9724722
    5087 1bnm:A (2.6) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 9865942
    5088 1bnm:A (2.6) BS02 AL8 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 9865942 BindingDB: Kd=0.1nM
    5089 1bnn:A (2.3) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 9865942
    5090 1bnn:A (2.3) BS02 AL1 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 9865942 MOAD: Kd=0.1nM
    BindingDB: Kd=0.1nM
    5091 1bnq:A (2.4) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 9865942
    5092 1bnq:A (2.4) BS02 AL4 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 9865942 MOAD: Kd=0.32nM
    BindingDB: Kd=0.32nM
    5093 1bnt:A (2.15) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 9865942
    5094 1bnt:A (2.15) BS02 AL2 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 9865942 MOAD: Kd=0.16nM
    BindingDB: Kd=0.16nM
    5095 1bnu:A (2.15) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 9865942
    5096 1bnu:A (2.15) BS02 AL3 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 9865942 MOAD: Kd=0.2nM
    BindingDB: Kd=0.2nM
    5097 1bnv:A (2.4) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 9865942
    5098 1bnv:A (2.4) BS02 AL7 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 9865942 MOAD: Kd=1.7nM
    BindingDB: Kd=1.7nM
    5099 1bnw:A (2.25) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 9865942
    5100 1bnw:A (2.25) BS02 TPD 4.2.1.1
    4.2.1.69
    GO:0004064 ... P00918 9865942 MOAD: Kd=0.83nM
    BindingDB: Kd=0.83nM
    5101 1bnz:A (2.0) BS01 dna ? GO:0003677 ... P39476 9731772
    5102 1bnz:A (2.0) BS02 dna ? GO:0003677 ... P39476 9731772
    5103 1bo4:A (2.3) BS01 COA ? GO:0016747 ... Q53396 9727487
    5104 1bo4:B (2.3) BS01 COA ? GO:0016747 ... Q53396 9727487
    5105 1bo5:O (3.2) BS01 FBP 2.7.1.30 GO:0004370 ... P0A6F3 9843423
    5106 1bo5:O (3.2) BS02 GOL 2.7.1.30 GO:0004370 ... P0A6F3 9843423
    5107 1bo5:Z (3.2) BS01 GOL 2.7.1.30 GO:0004370 ... P0A6F3 9843423
    5108 1bo6:A (2.1) BS01 VO4 2.8.2.4 GO:0004062 ... P49891 9765259
    5109 1bo6:A (2.1) BS02 A3P 2.8.2.4 GO:0004062 ... P49891 9765259
    5110 1bo6:B (2.1) BS01 VO4 2.8.2.4 GO:0004062 ... P49891 9765259
    5111 1bo6:B (2.1) BS02 A3P 2.8.2.4 GO:0004062 ... P49891 9765259
    5112 1bo7:A (2.4) BS01 U 2.1.1.45 GO:0004799 ... P00469 10653645
    5113 1bo8:A (2.4) BS01 U 2.1.1.45 GO:0004799 ... P00469 10653645
    5114 1boa:A (1.8) BS01 CO 3.4.11.18 GO:0003723 ... P50579 9812898
    5115 1boa:A (1.8) BS02 CO 3.4.11.18 GO:0003723 ... P50579 9812898
    5116 1boa:A (1.8) BS03 FUG 3.4.11.18 GO:0003723 ... P50579 9812898
    5117 1bob:A (2.3) BS01 ACO 2.3.1.48 GO:0004402 ... Q12341 9727486
    5118 1bof:A (2.2) BS01 MG ? GO:0000287 ... P10824 9772163
    5119 1bof:A (2.2) BS02 GDP ? GO:0000287 ... P10824 9772163
    5120 1bog:A (2.6) BS01 peptide N/A N/A N/A 9413990
    5121 1bog:B (2.6) BS01 peptide ? N/A P01864 9413990
    5122 1boo:A (2.8) BS01 SAH 2.1.1.113 GO:0003677 ... P11409 9207015
    5123 1bor:A (-1.00) BS01 ZN 2.3.2.- N/A P29590 7729428
    5124 1bor:A (-1.00) BS02 ZN 2.3.2.- N/A P29590 7729428
    5125 1bos:A (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    5126 1bos:A (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    5127 1bos:A (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    5128 1bos:A (2.8) BS04 GAL ? GO:0005576 ... P69179 9485303
    5129 1bos:A (2.8) BS05 GLA ? GO:0005576 ... P69179 9485303
    5130 1bos:A (2.8) BS06 GLA ? GO:0005576 ... P69179 9485303
    5131 1bos:B (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    5132 1bos:B (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    5133 1bos:B (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    5134 1bos:B (2.8) BS04 GAL ? GO:0005576 ... P69179 9485303
    5135 1bos:B (2.8) BS05 GLA ? GO:0005576 ... P69179 9485303
    5136 1bos:C (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    5137 1bos:C (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    5138 1bos:C (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    5139 1bos:C (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    5140 1bos:C (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    5141 1bos:D (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    5142 1bos:D (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    5143 1bos:D (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    5144 1bos:D (2.8) BS04 GAL ? GO:0005576 ... P69179 9485303
    5145 1bos:D (2.8) BS05 GLA ? GO:0005576 ... P69179 9485303
    5146 1bos:E (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    5147 1bos:E (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    5148 1bos:E (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    5149 1bos:E (2.8) BS04 GAL ? GO:0005576 ... P69179 9485303
    5150 1bos:F (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    5151 1bos:F (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    5152 1bos:F (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    5153 1bos:F (2.8) BS04 GAL ? GO:0005576 ... P69179 9485303
    5154 1bos:F (2.8) BS05 GLA ? GO:0005576 ... P69179 9485303
    5155 1bos:G (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    5156 1bos:G (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    5157 1bos:G (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    5158 1bos:G (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    5159 1bos:G (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    5160 1bos:H (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    5161 1bos:H (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    5162 1bos:H (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    5163 1bos:H (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    5164 1bos:H (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    5165 1bos:H (2.8) BS06 GLA ? GO:0005576 ... P69179 9485303
    5166 1bos:I (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    5167 1bos:I (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    5168 1bos:I (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    5169 1bos:I (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    5170 1bos:I (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    5171 1bos:J (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    5172 1bos:J (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    5173 1bos:J (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    5174 1bos:J (2.8) BS04 GAL ? GO:0005576 ... P69179 9485303
    5175 1bos:K (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    5176 1bos:K (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    5177 1bos:K (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    5178 1bos:K (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    5179 1bos:K (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    5180 1bos:L (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    5181 1bos:L (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    5182 1bos:L (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    5183 1bos:L (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    5184 1bos:L (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    5185 1bos:M (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    5186 1bos:M (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    5187 1bos:M (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    5188 1bos:M (2.8) BS04 GAL ? GO:0005576 ... P69179 9485303
    5189 1bos:M (2.8) BS05 GLA ? GO:0005576 ... P69179 9485303
    5190 1bos:N (2.8) BS01 GLA ? GO:0005576 ... P69179 9485303
    5191 1bos:N (2.8) BS02 GAL ? GO:0005576 ... P69179 9485303
    5192 1bos:N (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    5193 1bos:N (2.8) BS04 GLA ? GO:0005576 ... P69179 9485303
    5194 1bos:N (2.8) BS05 GAL ? GO:0005576 ... P69179 9485303
    5195 1bos:O (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    5196 1bos:O (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303
    5197 1bos:O (2.8) BS03 GLA ? GO:0005576 ... P69179 9485303
    5198 1bos:O (2.8) BS04 GAL ? GO:0005576 ... P69179 9485303
    5199 1bos:P (2.8) BS01 GAL ? GO:0005576 ... P69179 9485303
    5200 1bos:P (2.8) BS02 GLA ? GO:0005576 ... P69179 9485303

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).