SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    520201 6o97:2F (2.75) BS04 MG ? GO:0003735 ... Q5SHN9 30793894
    520202 6o97:2G (2.75) BS01 rna ? GO:0000049 ... Q5SHQ0 30793894
    520203 6o97:2G (2.75) BS02 rna ? GO:0000049 ... Q5SHQ0 30793894
    520204 6o97:2G (2.75) BS03 rna ? GO:0000049 ... Q5SHQ0 30793894
    520205 6o97:2H (2.75) BS01 rna ? GO:0002181 ... P0DOY8 30793894
    520206 6o97:2I (2.75) BS01 rna ? GO:0003735 ... Q5SLQ1 30793894
    520207 6o97:2N (2.75) BS01 rna ? GO:0003729 ... P60488 30793894
    520208 6o97:2O (2.75) BS01 rna ? GO:0003735 ... Q5SHP8 30793894
    520209 6o97:2O (2.75) BS02 rna ? GO:0003735 ... Q5SHP8 30793894
    520210 6o97:2P (2.75) BS01 rna ? GO:0003735 ... Q5SHQ7 30793894
    520211 6o97:2Q (2.75) BS01 rna ? GO:0000049 ... P60489 30793894
    520212 6o97:2Q (2.75) BS02 rna ? GO:0000049 ... P60489 30793894
    520213 6o97:2Q (2.75) BS03 rna ? GO:0000049 ... P60489 30793894
    520214 6o97:2Q (2.75) BS04 MG ? GO:0000049 ... P60489 30793894
    520215 6o97:2Q (2.75) BS05 MG ? GO:0000049 ... P60489 30793894
    520216 6o97:2Q (2.75) BS06 MG ? GO:0000049 ... P60489 30793894
    520217 6o97:2R (2.75) BS01 rna ? GO:0003735 ... Q9Z9H5 30793894
    520218 6o97:2S (2.75) BS01 rna ? GO:0003735 ... Q5SHQ4 30793894
    520219 6o97:2S (2.75) BS02 rna ? GO:0003735 ... Q5SHQ4 30793894
    520220 6o97:2T (2.75) BS01 rna ? GO:0003735 ... P60490 30793894
    520221 6o97:2T (2.75) BS02 rna ? GO:0003735 ... P60490 30793894
    520222 6o97:2T (2.75) BS03 MG ? GO:0003735 ... P60490 30793894
    520223 6o97:2U (2.75) BS01 rna ? GO:0000027 ... P60491 30793894
    520224 6o97:2U (2.75) BS02 MG ? GO:0000027 ... P60491 30793894
    520225 6o97:2V (2.75) BS01 rna ? GO:0003723 ... P60492 30793894
    520226 6o97:2V (2.75) BS02 MG ? GO:0003723 ... P60492 30793894
    520227 6o97:2V (2.75) BS03 MG ? GO:0003723 ... P60492 30793894
    520228 6o97:2W (2.75) BS01 rna ? GO:0003735 ... Q5SHP3 30793894
    520229 6o97:2W (2.75) BS02 MG ? GO:0003735 ... Q5SHP3 30793894
    520230 6o97:2X (2.75) BS01 rna ? GO:0003735 ... Q5SHP0 30793894
    520231 6o97:2Y (2.75) BS01 rna ? GO:0003723 ... Q5SHP9 30793894
    520232 6o97:2Y (2.75) BS02 ZN ? GO:0003723 ... Q5SHP9 30793894
    520233 6o97:2Z (2.75) BS01 rna ? GO:0003723 ... Q5SHZ1 30793894
    520234 6o97:2Z (2.75) BS02 rna ? GO:0003723 ... Q5SHZ1 30793894
    520235 6o97:2b (2.75) BS01 rna ? GO:0003735 ... P80371 30793894
    520236 6o97:2c (2.75) BS01 rna ? GO:0003676 ... P80372 30793894
    520237 6o97:2d (2.75) BS01 rna ? GO:0003723 ... P80373 30793894
    520238 6o97:2d (2.75) BS02 MG ? GO:0003723 ... P80373 30793894
    520239 6o97:2d (2.75) BS03 SF4 ? GO:0003723 ... P80373 30793894
    520240 6o97:2e (2.75) BS01 rna ? GO:0003723 ... Q5SHQ5 30793894
    520241 6o97:2e (2.75) BS02 MG ? GO:0003723 ... Q5SHQ5 30793894
    520242 6o97:2f (2.75) BS01 rna ? GO:0003735 ... Q5SLP8 30793894
    520243 6o97:2f (2.75) BS02 MG ? GO:0003735 ... Q5SLP8 30793894
    520244 6o97:2g (2.75) BS01 rna ? GO:0000049 ... P17291 30793894
    520245 6o97:2g (2.75) BS02 rna ? GO:0000049 ... P17291 30793894
    520246 6o97:2h (2.75) BS01 rna ? GO:0003735 ... P0DOY9 30793894
    520247 6o97:2i (2.75) BS01 rna ? GO:0000049 ... P80374 30793894
    520248 6o97:2i (2.75) BS02 rna ? GO:0000049 ... P80374 30793894
    520249 6o97:2j (2.75) BS01 rna ? GO:0000049 ... Q5SHN7 30793894
    520250 6o97:2k (2.75) BS01 rna ? GO:0003735 ... P80376 30793894
    520251 6o97:2k (2.75) BS02 MG ? GO:0003735 ... P80376 30793894
    520252 6o97:2l (2.75) BS01 rna ? GO:0000049 ... Q5SHN3 30793894
    520253 6o97:2l (2.75) BS02 rna ? GO:0000049 ... Q5SHN3 30793894
    520254 6o97:2m (2.75) BS01 rna ? GO:0000049 ... P80377 30793894
    520255 6o97:2m (2.75) BS02 rna ? GO:0000049 ... P80377 30793894
    520256 6o97:2n (2.75) BS01 rna ? GO:0003735 ... P0DOY6 30793894
    520257 6o97:2n (2.75) BS02 ZN ? GO:0003735 ... P0DOY6 30793894
    520258 6o97:2o (2.75) BS01 rna ? GO:0003735 ... Q5SJ76 30793894
    520259 6o97:2o (2.75) BS02 rna ? GO:0003735 ... Q5SJ76 30793894
    520260 6o97:2p (2.75) BS01 rna ? GO:0003735 ... Q5SJH3 30793894
    520261 6o97:2q (2.75) BS01 rna ? GO:0003735 ... P0DOY7 30793894
    520262 6o97:2q (2.75) BS02 MG ? GO:0003735 ... P0DOY7 30793894
    520263 6o97:2q (2.75) BS03 MG ? GO:0003735 ... P0DOY7 30793894
    520264 6o97:2r (2.75) BS01 rna ? GO:0003735 ... Q5SLQ0 30793894
    520265 6o97:2r (2.75) BS02 MG ? GO:0003735 ... Q5SLQ0 30793894
    520266 6o97:2s (2.75) BS01 rna ? GO:0000028 ... Q5SHP2 30793894
    520267 6o97:2t (2.75) BS01 rna ? GO:0003723 ... P80380 30793894
    520268 6o98:A (2.29) BS01 L8A ? GO:0003677 ... P51449 30891142 BindingDB: EC50=55nM
    520269 6o98:B (2.29) BS01 L8A ? GO:0003677 ... P51449 30891142 BindingDB: EC50=55nM
    520270 6o9a:A (2.326) BS01 3HB 4.2.1.151 GO:0009234 ... Q9RXE3 30855131
    520271 6o9a:B (2.326) BS01 3HB 4.2.1.151 GO:0009234 ... Q9RXE3 30855131
    520272 6o9b:A (2.2) BS01 peptide ? N/A P04439 31690625
    520273 6o9c:A (2.45) BS01 peptide ? N/A P04439 31690625
    520274 6o9d:A (2.51) BS01 LTY 2.7.11.1 GO:0000287 ... Q9NWZ3 31082230 BindingDB: IC50=41nM, Ki=2.0nM
    520275 6o9d:B (2.51) BS01 LTY 2.7.11.1 GO:0000287 ... Q9NWZ3 31082230 BindingDB: IC50=41nM, Ki=2.0nM
    520276 6o9d:C (2.51) BS01 LTY 2.7.11.1 GO:0000287 ... Q9NWZ3 31082230 BindingDB: IC50=41nM, Ki=2.0nM
    520277 6o9d:D (2.51) BS01 LTY 2.7.11.1 GO:0000287 ... Q9NWZ3 31082230 BindingDB: IC50=41nM, Ki=2.0nM
    520278 6o9e:A (2.4) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 31603676
    520279 6o9e:A (2.4) BS02 IY1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 31603676
    520280 6o9e:B (2.4) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003964 ... P03366 31603676
    520281 6o9e:B (2.4) BS02 GLC 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003964 ... P03366 31603676
    520282 6o9e:C (2.4) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 31603676
    520283 6o9e:C (2.4) BS02 IY1 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P03366 31603676
    520284 6o9e:D (2.4) BS01 FRU 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003964 ... P03366 31603676
    520285 6o9f:A (2.48) BS01 OCA 3.1.1.3 GO:0006629 ... O59952 N/A
    520286 6o9f:A (2.48) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    520287 6o9f:A (2.48) BS03 LTV 3.1.1.3 GO:0006629 ... O59952 N/A
    520288 6o9f:B (2.48) BS01 OCA 3.1.1.3 GO:0006629 ... O59952 N/A
    520289 6o9f:B (2.48) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    520290 6o9f:B (2.48) BS03 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    520291 6o9f:B (2.48) BS04 LTV 3.1.1.3 GO:0006629 ... O59952 N/A
    520292 6o9f:C (2.48) BS01 OCA 3.1.1.3 GO:0006629 ... O59952 N/A
    520293 6o9f:C (2.48) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    520294 6o9f:C (2.48) BS03 LTV 3.1.1.3 GO:0006629 ... O59952 N/A
    520295 6o9f:D (2.48) BS01 OCA 3.1.1.3 GO:0006629 ... O59952 N/A
    520296 6o9f:D (2.48) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    520297 6o9f:D (2.48) BS03 LTV 3.1.1.3 GO:0006629 ... O59952 N/A
    520298 6o9f:E (2.48) BS01 OCA 3.1.1.3 GO:0006629 ... O59952 N/A
    520299 6o9f:E (2.48) BS02 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    520300 6o9f:E (2.48) BS03 LTV 3.1.1.3 GO:0006629 ... O59952 N/A
    520301 6o9f:F (2.48) BS01 LTV 3.1.1.3 GO:0006629 ... O59952 N/A
    520302 6o9f:F (2.48) BS02 OCA 3.1.1.3 GO:0006629 ... O59952 N/A
    520303 6o9f:F (2.48) BS03 CA 3.1.1.3 GO:0006629 ... O59952 N/A
    520304 6o9f:F (2.48) BS04 LTV 3.1.1.3 GO:0006629 ... O59952 N/A
    520305 6o9g:A (4.8) BS01 GLU ? GO:0000149 ... P19491
    Q9Y698
    30122377
    520306 6o9g:A (4.8) BS02 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    520307 6o9g:B (4.8) BS01 GLU ? GO:0000149 ... P19491
    Q9Y698
    30122377
    520308 6o9g:B (4.8) BS02 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    520309 6o9g:B (4.8) BS03 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    520310 6o9g:B (4.8) BS04 LU7 ? GO:0000149 ... P19491
    Q9Y698
    30122377
    520311 6o9g:C (4.8) BS01 GLU ? GO:0000149 ... P19491
    Q9Y698
    30122377
    520312 6o9g:C (4.8) BS02 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    520313 6o9g:C (4.8) BS03 LU7 ? GO:0000149 ... P19491
    Q9Y698
    30122377
    520314 6o9g:D (4.8) BS01 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    520315 6o9g:D (4.8) BS02 GLU ? GO:0000149 ... P19491
    Q9Y698
    30122377
    520316 6o9g:D (4.8) BS03 CYZ ? GO:0000149 ... P19491
    Q9Y698
    30122377
    520317 6o9g:D (4.8) BS04 LU7 ? GO:0000149 ... P19491
    Q9Y698
    30122377
    520318 6o9j:1 (3.9) BS01 rna ? GO:0000027 ... P0A7N4 31108498
    520319 6o9j:2 (3.9) BS01 rna ? GO:0000027 ... P0A7N9 31108498
    520320 6o9j:3 (3.9) BS01 rna ? GO:0002181 ... P0A7P5 31108498
    520321 6o9j:4 (3.9) BS01 rna ? GO:0002181 ... P0A7Q1 31108498
    520322 6o9j:5 (3.9) BS01 rna ? GO:0002181 ... P0A7Q6 31108498
    520323 6o9j:6 (3.9) BS01 rna ? GO:0000027 ... P0A7J7 31108498
    520324 6o9j:7 (3.9) BS01 rna ? GO:0000028 ... P0A7V0 31108498
    520325 6o9j:C (3.9) BS01 rna ? GO:0000027 ... P60422 31108498
    520326 6o9j:D (3.9) BS01 rna ? GO:0000027 ... P60438 31108498
    520327 6o9j:E (3.9) BS01 rna ? GO:0001070 ... P60723 31108498
    520328 6o9j:F (3.9) BS01 rna ? GO:0000027 ... P62399 31108498
    520329 6o9j:F (3.9) BS02 rna ? GO:0000027 ... P62399 31108498
    520330 6o9j:F (3.9) BS03 rna ? GO:0000027 ... P62399 31108498
    520331 6o9j:G (3.9) BS01 rna ? GO:0000027 ... P0AG55 31108498
    520332 6o9j:H (3.9) BS01 rna ? GO:0002181 ... P0A7R1 31108498
    520333 6o9j:J (3.9) BS01 rna ? GO:0002181 ... P0AA10 31108498
    520334 6o9j:K (3.9) BS01 rna ? GO:0002181 ... P0ADY3 31108498
    520335 6o9j:K (3.9) BS02 rna ? GO:0002181 ... P0ADY3 31108498
    520336 6o9j:L (3.9) BS01 rna ? GO:0002181 ... P02413 31108498
    520337 6o9j:M (3.9) BS01 rna ? GO:0000027 ... P0ADY7 31108498
    520338 6o9j:M (3.9) BS02 rna ? GO:0000027 ... P0ADY7 31108498
    520339 6o9j:N (3.9) BS01 rna ? GO:0000027 ... P0AG44 31108498
    520340 6o9j:O (3.9) BS01 rna ? GO:0002181 ... P0C018 31108498
    520341 6o9j:O (3.9) BS02 rna ? GO:0002181 ... P0C018 31108498
    520342 6o9j:P (3.9) BS01 rna ? GO:0000027 ... P0A7K6 31108498
    520343 6o9j:P (3.9) BS02 rna ? GO:0000027 ... P0A7K6 31108498
    520344 6o9j:Q (3.9) BS01 rna ? GO:0000027 ... P0A7L3 31108498
    520345 6o9j:R (3.9) BS01 rna ? GO:0002181 ... P0AG48 31108498
    520346 6o9j:S (3.9) BS01 rna ? GO:0002181 ... P61175 31108498
    520347 6o9j:T (3.9) BS01 rna ? GO:0000027 ... P0ADZ0 31108498
    520348 6o9j:U (3.9) BS01 rna ? GO:0000027 ... P60624 31108498
    520349 6o9j:V (3.9) BS01 rna ? GO:0000027 ... P68919 31108498
    520350 6o9j:V (3.9) BS02 rna ? GO:0000027 ... P68919 31108498
    520351 6o9j:W (3.9) BS01 rna ? GO:0000027 ... P0A7L8 31108498
    520352 6o9j:W (3.9) BS02 rna ? GO:0000027 ... P0A7L8 31108498
    520353 6o9j:X (3.9) BS01 rna ? GO:0000027 ... P0A7M6 31108498
    520354 6o9j:Y (3.9) BS01 rna ? GO:0000027 ... P0AG51 31108498
    520355 6o9j:Y (3.9) BS02 rna ? GO:0000027 ... P0AG51 31108498
    520356 6o9j:Z (3.9) BS01 rna ? GO:0002181 ... P0A7M9 31108498
    520357 6o9j:c (3.9) BS01 rna ? GO:0003676 ... P0A7V3 31108498
    520358 6o9j:d (3.9) BS01 rna ? GO:0000028 ... P0A7V8 31108498
    520359 6o9j:e (3.9) BS01 rna ? GO:0000028 ... P0A7W1 31108498
    520360 6o9j:f (3.9) BS01 rna ? GO:0003735 ... P02358 31108498
    520361 6o9j:g (3.9) BS01 rna ? GO:0003723 ... P02359 31108498
    520362 6o9j:h (3.9) BS01 rna ? GO:0000028 ... P0A7W7 31108498
    520363 6o9j:i (3.9) BS01 rna ? GO:0000049 ... P0A7X3 31108498
    520364 6o9j:j (3.9) BS01 rna ? GO:0000049 ... P0A7R5 31108498
    520365 6o9j:k (3.9) BS01 rna ? GO:0002181 ... P0A7R9 31108498
    520366 6o9j:l (3.9) BS01 rna ? GO:0000049 ... P0A7S3 31108498
    520367 6o9j:m (3.9) BS01 rna ? GO:0000049 ... P0A7S9 31108498
    520368 6o9j:n (3.9) BS01 rna ? GO:0000028 ... P0AG59 31108498
    520369 6o9j:o (3.9) BS01 rna ? GO:0000028 ... P0ADZ4 31108498
    520370 6o9j:o (3.9) BS02 rna ? GO:0000028 ... P0ADZ4 31108498
    520371 6o9j:p (3.9) BS01 rna ? GO:0000028 ... P0A7T3 31108498
    520372 6o9j:q (3.9) BS01 rna ? GO:0000028 ... P0AG63 31108498
    520373 6o9j:r (3.9) BS01 rna ? GO:0003735 ... P0A7T7 31108498
    520374 6o9j:s (3.9) BS01 rna ? GO:0003723 ... P0A7U3 31108498
    520375 6o9j:t (3.9) BS01 rna ? GO:0000028 ... P0A7U7 31108498
    520376 6o9j:u (3.9) BS01 rna ? GO:0003735 ... P68679 31108498
    520377 6o9k:0 (4.0) BS01 rna ? GO:0000027 ... P0A7L8 31108498
    520378 6o9k:0 (4.0) BS02 rna ? GO:0000027 ... P0A7L8 31108498
    520379 6o9k:1 (4.0) BS01 rna ? GO:0000027 ... P0A7M2 31108498
    520380 6o9k:2 (4.0) BS01 rna ? GO:0000027 ... P0A7M6 31108498
    520381 6o9k:3 (4.0) BS01 rna ? GO:0000027 ... P0AG51 31108498
    520382 6o9k:3 (4.0) BS02 rna ? GO:0000027 ... P0AG51 31108498
    520383 6o9k:4 (4.0) BS01 rna ? GO:0000027 ... P60438 31108498
    520384 6o9k:5 (4.0) BS01 rna ? GO:0000027 ... P0A7N4 31108498
    520385 6o9k:6 (4.0) BS01 rna ? GO:0000027 ... P0A7N9 31108498
    520386 6o9k:7 (4.0) BS01 rna ? GO:0002181 ... P0A7P5 31108498
    520387 6o9k:8 (4.0) BS01 rna ? GO:0002181 ... P0A7Q1 31108498
    520388 6o9k:9 (4.0) BS01 rna ? GO:0000027 ... P60422 31108498
    520389 6o9k:E (4.0) BS01 rna ? GO:0001070 ... P60723 31108498
    520390 6o9k:F (4.0) BS01 rna ? GO:0000027 ... P62399 31108498
    520391 6o9k:F (4.0) BS02 rna ? GO:0000027 ... P62399 31108498
    520392 6o9k:F (4.0) BS03 rna ? GO:0000027 ... P62399 31108498
    520393 6o9k:G (4.0) BS01 rna ? GO:0003735 ... P0A7J3 31108498
    520394 6o9k:H (4.0) BS01 rna ? GO:0000027 ... P0AG55 31108498
    520395 6o9k:I (4.0) BS01 rna ? GO:0000027 ... P0A7J7 31108498
    520396 6o9k:J (4.0) BS01 rna ? GO:0002181 ... P0AA10 31108498
    520397 6o9k:K (4.0) BS01 rna ? GO:0002181 ... P0ADY3 31108498
    520398 6o9k:K (4.0) BS02 rna ? GO:0002181 ... P0ADY3 31108498
    520399 6o9k:L (4.0) BS01 rna ? GO:0002181 ... P02413 31108498
    520400 6o9k:M (4.0) BS01 rna ? GO:0000027 ... P0ADY7 31108498

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).