SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    524401 6ord:RD (3.1) BS06 MG ? GO:0002181 ... P60405 32601241
    524402 6ord:RE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 32601241
    524403 6ord:RE (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 32601241
    524404 6ord:RE (3.1) BS03 MG ? GO:0003735 ... Q5SHN8 32601241
    524405 6ord:RF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 32601241
    524406 6ord:RF (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 32601241
    524407 6ord:RF (3.1) BS03 MG ? GO:0003735 ... Q5SHN9 32601241
    524408 6ord:RF (3.1) BS04 MG ? GO:0003735 ... Q5SHN9 32601241
    524409 6ord:RG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 32601241
    524410 6ord:RG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 32601241
    524411 6ord:RG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 32601241
    524412 6ord:RG (3.1) BS04 MG ? GO:0000049 ... Q5SHQ0 32601241
    524413 6ord:RG (3.1) BS05 MG ? GO:0000049 ... Q5SHQ0 32601241
    524414 6ord:RH (3.1) BS01 rna ? GO:0002181 ... P0DOY8 32601241
    524415 6ord:RI (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 32601241
    524416 6ord:RN (3.1) BS01 rna ? GO:0003729 ... P60488 32601241
    524417 6ord:RO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 32601241
    524418 6ord:RO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 32601241
    524419 6ord:RP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 32601241
    524420 6ord:RQ (3.1) BS01 rna ? GO:0000049 ... P60489 32601241
    524421 6ord:RQ (3.1) BS02 rna ? GO:0000049 ... P60489 32601241
    524422 6ord:RQ (3.1) BS03 MG ? GO:0000049 ... P60489 32601241
    524423 6ord:RQ (3.1) BS04 MG ? GO:0000049 ... P60489 32601241
    524424 6ord:RR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 32601241
    524425 6ord:RS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 32601241
    524426 6ord:RS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 32601241
    524427 6ord:RT (3.1) BS01 rna ? GO:0003735 ... P60490 32601241
    524428 6ord:RT (3.1) BS02 rna ? GO:0003735 ... P60490 32601241
    524429 6ord:RU (3.1) BS01 rna ? GO:0000027 ... P60491 32601241
    524430 6ord:RU (3.1) BS02 MG ? GO:0000027 ... P60491 32601241
    524431 6ord:RU (3.1) BS03 MG ? GO:0000027 ... P60491 32601241
    524432 6ord:RV (3.1) BS01 rna ? GO:0003723 ... P60492 32601241
    524433 6ord:RV (3.1) BS02 MG ? GO:0003723 ... P60492 32601241
    524434 6ord:RV (3.1) BS03 MG ? GO:0003723 ... P60492 32601241
    524435 6ord:RV (3.1) BS04 MG ? GO:0003723 ... P60492 32601241
    524436 6ord:RW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 32601241
    524437 6ord:RW (3.1) BS02 MG ? GO:0003735 ... Q5SHP3 32601241
    524438 6ord:RX (3.1) BS01 rna ? GO:0003735 ... Q5SHP0 32601241
    524439 6ord:RY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 32601241
    524440 6ord:RY (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 32601241
    524441 6ord:RZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 32601241
    524442 6ord:RZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 32601241
    524443 6ord:XB (3.1) BS01 rna ? GO:0003735 ... P80371 32601241
    524444 6ord:XC (3.1) BS01 rna ? GO:0003676 ... P80372 32601241
    524445 6ord:XD (3.1) BS01 rna ? GO:0003723 ... P80373 32601241
    524446 6ord:XD (3.1) BS02 SF4 ? GO:0003723 ... P80373 32601241
    524447 6ord:XE (3.1) BS01 rna ? GO:0003723 ... Q5SHQ5 32601241
    524448 6ord:XF (3.1) BS01 rna ? GO:0003735 ... Q5SLP8 32601241
    524449 6ord:XF (3.1) BS02 MG ? GO:0003735 ... Q5SLP8 32601241
    524450 6ord:XG (3.1) BS01 rna ? GO:0000049 ... P17291 32601241
    524451 6ord:XH (3.1) BS01 rna ? GO:0003735 ... P0DOY9 32601241
    524452 6ord:XI (3.1) BS01 rna ? GO:0000049 ... P80374 32601241
    524453 6ord:XJ (3.1) BS01 rna ? GO:0000049 ... Q5SHN7 32601241
    524454 6ord:XK (3.1) BS01 rna ? GO:0003735 ... P80376 32601241
    524455 6ord:XK (3.1) BS02 MG ? GO:0003735 ... P80376 32601241
    524456 6ord:XL (3.1) BS01 rna ? GO:0000049 ... Q5SHN3 32601241
    524457 6ord:XL (3.1) BS02 MG ? GO:0000049 ... Q5SHN3 32601241
    524458 6ord:XM (3.1) BS01 rna ? GO:0000049 ... P80377 32601241
    524459 6ord:XM (3.1) BS02 rna ? GO:0000049 ... P80377 32601241
    524460 6ord:XN (3.1) BS01 rna ? GO:0003735 ... P0DOY6 32601241
    524461 6ord:XN (3.1) BS02 ZN ? GO:0003735 ... P0DOY6 32601241
    524462 6ord:XO (3.1) BS01 rna ? GO:0003735 ... Q5SJ76 32601241
    524463 6ord:XO (3.1) BS02 rna ? GO:0003735 ... Q5SJ76 32601241
    524464 6ord:XP (3.1) BS01 rna ? GO:0003735 ... Q5SJH3 32601241
    524465 6ord:XQ (3.1) BS01 rna ? GO:0003735 ... P0DOY7 32601241
    524466 6ord:XR (3.1) BS01 rna ? GO:0003735 ... Q5SLQ0 32601241
    524467 6ord:XS (3.1) BS01 rna ? GO:0000028 ... Q5SHP2 32601241
    524468 6ord:XT (3.1) BS01 rna ? GO:0003723 ... P80380 32601241
    524469 6ord:Y0 (3.1) BS01 rna ? GO:0003735 ... P60493 32601241
    524470 6ord:Y0 (3.1) BS02 rna ? GO:0003735 ... P60493 32601241
    524471 6ord:Y0 (3.1) BS03 rna ? GO:0003735 ... P60493 32601241
    524472 6ord:Y1 (3.1) BS01 rna ? GO:0003735 ... P60494 32601241
    524473 6ord:Y2 (3.1) BS01 rna ? GO:0003735 ... Q5SHP6 32601241
    524474 6ord:Y3 (3.1) BS01 rna ? GO:0003735 ... Q5SHQ6 32601241
    524475 6ord:Y3 (3.1) BS02 rna ? GO:0003735 ... Q5SHQ6 32601241
    524476 6ord:Y4 (3.1) BS01 rna ? GO:0003735 ... Q5SJE1 32601241
    524477 6ord:Y4 (3.1) BS02 ZN ? GO:0003735 ... Q5SJE1 32601241
    524478 6ord:Y5 (3.1) BS01 rna ? GO:0003735 ... P80339 32601241
    524479 6ord:Y5 (3.1) BS02 ZN ? GO:0003735 ... P80339 32601241
    524480 6ord:Y6 (3.1) BS01 rna ? GO:0000049 ... P35871 32601241
    524481 6ord:Y6 (3.1) BS02 ZN ? GO:0000049 ... P35871 32601241
    524482 6ord:Y7 (3.1) BS01 rna ? GO:0003735 ... P80340 32601241
    524483 6ord:Y7 (3.1) BS02 MG ? GO:0003735 ... P80340 32601241
    524484 6ord:Y8 (3.1) BS01 rna ? GO:0003735 ... Q5SKU1 32601241
    524485 6ord:Y9 (3.1) BS01 rna ? GO:0003735 ... Q5SHR2 32601241
    524486 6ord:Y9 (3.1) BS02 ZN ? GO:0003735 ... Q5SHR2 32601241
    524487 6ord:YD (3.1) BS01 rna ? GO:0002181 ... P60405 32601241
    524488 6ord:YD (3.1) BS02 rna ? GO:0002181 ... P60405 32601241
    524489 6ord:YD (3.1) BS03 MG ? GO:0002181 ... P60405 32601241
    524490 6ord:YD (3.1) BS04 MG ? GO:0002181 ... P60405 32601241
    524491 6ord:YD (3.1) BS05 MG ? GO:0002181 ... P60405 32601241
    524492 6ord:YD (3.1) BS06 MG ? GO:0002181 ... P60405 32601241
    524493 6ord:YD (3.1) BS07 MG ? GO:0002181 ... P60405 32601241
    524494 6ord:YE (3.1) BS01 rna ? GO:0003735 ... Q5SHN8 32601241
    524495 6ord:YE (3.1) BS02 MG ? GO:0003735 ... Q5SHN8 32601241
    524496 6ord:YE (3.1) BS03 MG ? GO:0003735 ... Q5SHN8 32601241
    524497 6ord:YF (3.1) BS01 rna ? GO:0003735 ... Q5SHN9 32601241
    524498 6ord:YF (3.1) BS02 MG ? GO:0003735 ... Q5SHN9 32601241
    524499 6ord:YF (3.1) BS03 MG ? GO:0003735 ... Q5SHN9 32601241
    524500 6ord:YG (3.1) BS01 rna ? GO:0000049 ... Q5SHQ0 32601241
    524501 6ord:YG (3.1) BS02 rna ? GO:0000049 ... Q5SHQ0 32601241
    524502 6ord:YG (3.1) BS03 rna ? GO:0000049 ... Q5SHQ0 32601241
    524503 6ord:YG (3.1) BS04 MG ? GO:0000049 ... Q5SHQ0 32601241
    524504 6ord:YG (3.1) BS05 MG ? GO:0000049 ... Q5SHQ0 32601241
    524505 6ord:YH (3.1) BS01 rna ? GO:0002181 ... P0DOY8 32601241
    524506 6ord:YI (3.1) BS01 rna ? GO:0003735 ... Q5SLQ1 32601241
    524507 6ord:YI (3.1) BS02 rna ? GO:0003735 ... Q5SLQ1 32601241
    524508 6ord:YI (3.1) BS03 MG ? GO:0003735 ... Q5SLQ1 32601241
    524509 6ord:YN (3.1) BS01 rna ? GO:0003729 ... P60488 32601241
    524510 6ord:YO (3.1) BS01 rna ? GO:0003735 ... Q5SHP8 32601241
    524511 6ord:YO (3.1) BS02 rna ? GO:0003735 ... Q5SHP8 32601241
    524512 6ord:YP (3.1) BS01 rna ? GO:0003735 ... Q5SHQ7 32601241
    524513 6ord:YQ (3.1) BS01 rna ? GO:0000049 ... P60489 32601241
    524514 6ord:YQ (3.1) BS02 rna ? GO:0000049 ... P60489 32601241
    524515 6ord:YQ (3.1) BS03 rna ? GO:0000049 ... P60489 32601241
    524516 6ord:YQ (3.1) BS04 MG ? GO:0000049 ... P60489 32601241
    524517 6ord:YR (3.1) BS01 rna ? GO:0003735 ... Q9Z9H5 32601241
    524518 6ord:YS (3.1) BS01 rna ? GO:0003735 ... Q5SHQ4 32601241
    524519 6ord:YS (3.1) BS02 rna ? GO:0003735 ... Q5SHQ4 32601241
    524520 6ord:YT (3.1) BS01 rna ? GO:0003735 ... P60490 32601241
    524521 6ord:YT (3.1) BS02 rna ? GO:0003735 ... P60490 32601241
    524522 6ord:YU (3.1) BS01 rna ? GO:0000027 ... P60491 32601241
    524523 6ord:YU (3.1) BS02 MG ? GO:0000027 ... P60491 32601241
    524524 6ord:YV (3.1) BS01 rna ? GO:0003723 ... P60492 32601241
    524525 6ord:YV (3.1) BS02 MG ? GO:0003723 ... P60492 32601241
    524526 6ord:YV (3.1) BS03 MG ? GO:0003723 ... P60492 32601241
    524527 6ord:YW (3.1) BS01 rna ? GO:0003735 ... Q5SHP3 32601241
    524528 6ord:YW (3.1) BS02 MG ? GO:0003735 ... Q5SHP3 32601241
    524529 6ord:YX (3.1) BS01 rna ? GO:0003735 ... Q5SHP0 32601241
    524530 6ord:YY (3.1) BS01 rna ? GO:0003723 ... Q5SHP9 32601241
    524531 6ord:YY (3.1) BS02 ZN ? GO:0003723 ... Q5SHP9 32601241
    524532 6ord:YZ (3.1) BS01 rna ? GO:0003723 ... Q5SHZ1 32601241
    524533 6ord:YZ (3.1) BS02 rna ? GO:0003723 ... Q5SHZ1 32601241
    524534 6ore:B (2.9) BS01 rna ? GO:0000027 ... P60422 31189921
    524535 6ore:C (2.9) BS01 rna ? GO:0000027 ... P60438 31189921
    524536 6ore:D (2.9) BS01 rna ? GO:0001070 ... P60723 31189921
    524537 6ore:E (2.9) BS01 rna ? GO:0000027 ... P62399 31189921
    524538 6ore:E (2.9) BS02 rna ? GO:0000027 ... P62399 31189921
    524539 6ore:E (2.9) BS03 rna ? GO:0000027 ... P62399 31189921
    524540 6ore:F (2.9) BS01 rna ? GO:0000027 ... P0AG55 31189921
    524541 6ore:G (2.9) BS01 rna ? GO:0002181 ... P0A7R1 31189921
    524542 6ore:J (2.9) BS01 rna ? GO:0002181 ... P0AA10 31189921
    524543 6ore:K (2.9) BS01 rna ? GO:0002181 ... P0ADY3 31189921
    524544 6ore:K (2.9) BS02 rna ? GO:0002181 ... P0ADY3 31189921
    524545 6ore:L (2.9) BS01 rna ? GO:0002181 ... P02413 31189921
    524546 6ore:M (2.9) BS01 rna ? GO:0000027 ... P0ADY7 31189921
    524547 6ore:M (2.9) BS02 rna ? GO:0000027 ... P0ADY7 31189921
    524548 6ore:N (2.9) BS01 rna ? GO:0000027 ... P0AG44 31189921
    524549 6ore:O (2.9) BS01 rna ? GO:0002181 ... P0C018 31189921
    524550 6ore:O (2.9) BS02 rna ? GO:0002181 ... P0C018 31189921
    524551 6ore:P (2.9) BS01 rna ? GO:0000027 ... P0A7K6 31189921
    524552 6ore:P (2.9) BS02 rna ? GO:0000027 ... P0A7K6 31189921
    524553 6ore:Q (2.9) BS01 rna ? GO:0000027 ... P0A7L3 31189921
    524554 6ore:R (2.9) BS01 rna ? GO:0002181 ... P0AG48 31189921
    524555 6ore:S (2.9) BS01 rna ? GO:0002181 ... P61175 31189921
    524556 6ore:T (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 31189921
    524557 6ore:U (2.9) BS01 rna ? GO:0000027 ... P60624 31189921
    524558 6ore:V (2.9) BS01 rna ? GO:0000027 ... P68919 31189921
    524559 6ore:V (2.9) BS02 rna ? GO:0000027 ... P68919 31189921
    524560 6ore:W (2.9) BS01 rna ? GO:0003735 ... P0A7L8 31189921
    524561 6ore:W (2.9) BS02 rna ? GO:0003735 ... P0A7L8 31189921
    524562 6ore:X (2.9) BS01 rna ? GO:0000027 ... P0A7M2 31189921
    524563 6ore:Y (2.9) BS01 rna ? GO:0000027 ... P0A7M6 31189921
    524564 6ore:Z (2.9) BS01 rna ? GO:0000027 ... P0AG51 31189921
    524565 6ore:a (2.9) BS01 rna ? GO:0002181 ... P0A7M9 31189921
    524566 6ore:a (2.9) BS02 rna ? GO:0002181 ... P0A7M9 31189921
    524567 6ore:a (2.9) BS03 ZN ? GO:0002181 ... P0A7M9 31189921
    524568 6ore:b (2.9) BS01 rna ? GO:0000027 ... P0A7N4 31189921
    524569 6ore:c (2.9) BS01 rna ? GO:0000027 ... P0A7N9 31189921
    524570 6ore:d (2.9) BS01 rna ? GO:0002181 ... P0A7P5 31189921
    524571 6ore:e (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 31189921
    524572 6ore:f (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 31189921
    524573 6ore:f (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 31189921
    524574 6ore:g (2.9) BS01 rna ? GO:0000028 ... P0A7V0 31189921
    524575 6ore:h (2.9) BS01 rna ? GO:0003676 ... P0A7V3 31189921
    524576 6ore:i (2.9) BS01 rna ? GO:0000028 ... P0A7V8 31189921
    524577 6ore:i (2.9) BS02 MG ? GO:0000028 ... P0A7V8 31189921
    524578 6ore:j (2.9) BS01 rna ? GO:0000028 ... P0A7W1 31189921
    524579 6ore:k (2.9) BS01 rna ? GO:0003735 ... P02358 31189921
    524580 6ore:l (2.9) BS01 rna ? GO:0003723 ... P02359 31189921
    524581 6ore:m (2.9) BS01 rna ? GO:0000028 ... P0A7W7 31189921
    524582 6ore:n (2.9) BS01 rna ? GO:0000049 ... P0A7X3 31189921
    524583 6ore:n (2.9) BS02 rna ? GO:0000049 ... P0A7X3 31189921
    524584 6ore:o (2.9) BS01 rna ? GO:0000049 ... P0A7R5 31189921
    524585 6ore:p (2.9) BS01 rna ? GO:0002181 ... P0A7R9 31189921
    524586 6ore:q (2.9) BS01 rna ? GO:0000049 ... P0A7S3 31189921
    524587 6ore:r (2.9) BS01 rna ? GO:0000049 ... P0A7S9 31189921
    524588 6ore:r (2.9) BS02 rna ? GO:0000049 ... P0A7S9 31189921
    524589 6ore:r (2.9) BS03 MG ? GO:0000049 ... P0A7S9 31189921
    524590 6ore:s (2.9) BS01 rna ? GO:0000028 ... P0AG59 31189921
    524591 6ore:t (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 31189921
    524592 6ore:t (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 31189921
    524593 6ore:u (2.9) BS01 rna ? GO:0000028 ... P0A7T3 31189921
    524594 6ore:v (2.9) BS01 rna ? GO:0000028 ... P0AG63 31189921
    524595 6ore:w (2.9) BS01 rna ? GO:0003735 ... P0A7T7 31189921
    524596 6ore:x (2.9) BS01 rna ? GO:0000028 ... P0A7U3 31189921
    524597 6ore:y (2.9) BS01 rna ? GO:0000028 ... P0A7U7 31189921
    524598 6ore:z (2.9) BS01 rna ? GO:0000028 ... P68679 31189921
    524599 6orf:A (1.7) BS01 FUC ? GO:0004560 ... A0A0H2US78 31266803
    524600 6orf:A (1.7) BS02 GAL ? GO:0004560 ... A0A0H2US78 31266803

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).