SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 2617 2618 2619 2620 2621 2622 2623 2624 2625 2626 2627 2628 2629 2630 2631 2632 2633 2634 2635 2636 2637 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    525201 6otr:QC (3.12) BS01 rna ? GO:0003676 ... P80372 31501867
    525202 6otr:QD (3.12) BS01 rna ? GO:0003723 ... P80373 31501867
    525203 6otr:QD (3.12) BS02 SF4 ? GO:0003723 ... P80373 31501867
    525204 6otr:QE (3.12) BS01 rna ? GO:0003723 ... Q5SHQ5 31501867
    525205 6otr:QF (3.12) BS01 rna ? GO:0003735 ... Q5SLP8 31501867
    525206 6otr:QG (3.12) BS01 rna ? GO:0000049 ... P17291 31501867
    525207 6otr:QG (3.12) BS02 rna ? GO:0000049 ... P17291 31501867
    525208 6otr:QH (3.12) BS01 rna ? GO:0003735 ... P0DOY9 31501867
    525209 6otr:QI (3.12) BS01 rna ? GO:0000049 ... P80374 31501867
    525210 6otr:QI (3.12) BS02 rna ? GO:0000049 ... P80374 31501867
    525211 6otr:QJ (3.12) BS01 rna ? GO:0000049 ... Q5SHN7 31501867
    525212 6otr:QK (3.12) BS01 rna ? GO:0003735 ... P80376 31501867
    525213 6otr:QL (3.12) BS01 rna ? GO:0000049 ... Q5SHN3 31501867
    525214 6otr:QM (3.12) BS01 rna ? GO:0000049 ... P80377 31501867
    525215 6otr:QN (3.12) BS01 rna ? GO:0003735 ... P0DOY6 31501867
    525216 6otr:QN (3.12) BS02 ZN ? GO:0003735 ... P0DOY6 31501867
    525217 6otr:QO (3.12) BS01 rna ? GO:0003735 ... Q5SJ76 31501867
    525218 6otr:QO (3.12) BS02 rna ? GO:0003735 ... Q5SJ76 31501867
    525219 6otr:QP (3.12) BS01 rna ? GO:0003735 ... Q5SJH3 31501867
    525220 6otr:QQ (3.12) BS01 rna ? GO:0003735 ... P0DOY7 31501867
    525221 6otr:QR (3.12) BS01 rna ? GO:0003735 ... Q5SLQ0 31501867
    525222 6otr:QS (3.12) BS01 rna ? GO:0000028 ... Q5SHP2 31501867
    525223 6otr:QT (3.12) BS01 rna ? GO:0003723 ... P80380 31501867
    525224 6otr:QY (3.12) BS01 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    525225 6otr:QY (3.12) BS02 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    525226 6otr:QY (3.12) BS03 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    525227 6otr:QY (3.12) BS04 A3P 3.1.-.- GO:0004519 ... J7QFC0 31501867
    525228 6otr:QZ (3.12) BS01 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    525229 6otr:R0 (3.12) BS01 rna ? GO:0003735 ... P60493 31501867
    525230 6otr:R0 (3.12) BS02 rna ? GO:0003735 ... P60493 31501867
    525231 6otr:R0 (3.12) BS03 rna ? GO:0003735 ... P60493 31501867
    525232 6otr:R1 (3.12) BS01 rna ? GO:0003735 ... P60494 31501867
    525233 6otr:R2 (3.12) BS01 rna ? GO:0003735 ... Q5SHP6 31501867
    525234 6otr:R3 (3.12) BS01 rna ? GO:0003735 ... Q5SHQ6 31501867
    525235 6otr:R3 (3.12) BS02 rna ? GO:0003735 ... Q5SHQ6 31501867
    525236 6otr:R4 (3.12) BS01 rna ? GO:0003735 ... Q5SJE1 31501867
    525237 6otr:R5 (3.12) BS01 rna ? GO:0003735 ... P80339 31501867
    525238 6otr:R6 (3.12) BS01 rna ? GO:0000049 ... P35871 31501867
    525239 6otr:R6 (3.12) BS02 ZN ? GO:0000049 ... P35871 31501867
    525240 6otr:R7 (3.12) BS01 rna ? GO:0003735 ... P80340 31501867
    525241 6otr:R8 (3.12) BS01 rna ? GO:0003735 ... Q5SKU1 31501867
    525242 6otr:R9 (3.12) BS01 rna ? GO:0003735 ... Q5SHR2 31501867
    525243 6otr:R9 (3.12) BS02 ZN ? GO:0003735 ... Q5SHR2 31501867
    525244 6otr:RD (3.12) BS01 rna ? GO:0002181 ... P60405 31501867
    525245 6otr:RD (3.12) BS02 rna ? GO:0002181 ... P60405 31501867
    525246 6otr:RD (3.12) BS03 MG ? GO:0002181 ... P60405 31501867
    525247 6otr:RD (3.12) BS04 MG ? GO:0002181 ... P60405 31501867
    525248 6otr:RE (3.12) BS01 rna ? GO:0003735 ... Q5SHN8 31501867
    525249 6otr:RF (3.12) BS01 rna ? GO:0003735 ... Q5SHN9 31501867
    525250 6otr:RG (3.12) BS01 rna ? GO:0000049 ... Q5SHQ0 31501867
    525251 6otr:RG (3.12) BS02 rna ? GO:0000049 ... Q5SHQ0 31501867
    525252 6otr:RG (3.12) BS03 rna ? GO:0000049 ... Q5SHQ0 31501867
    525253 6otr:RH (3.12) BS01 rna ? GO:0002181 ... P0DOY8 31501867
    525254 6otr:RI (3.12) BS01 rna ? GO:0003735 ... Q5SLQ1 31501867
    525255 6otr:RN (3.12) BS01 rna ? GO:0003729 ... P60488 31501867
    525256 6otr:RO (3.12) BS01 rna ? GO:0003735 ... Q5SHP8 31501867
    525257 6otr:RO (3.12) BS02 rna ? GO:0003735 ... Q5SHP8 31501867
    525258 6otr:RO (3.12) BS03 MG ? GO:0003735 ... Q5SHP8 31501867
    525259 6otr:RP (3.12) BS01 rna ? GO:0003735 ... Q5SHQ7 31501867
    525260 6otr:RQ (3.12) BS01 rna ? GO:0000049 ... P60489 31501867
    525261 6otr:RQ (3.12) BS02 rna ? GO:0000049 ... P60489 31501867
    525262 6otr:RQ (3.12) BS03 rna ? GO:0000049 ... P60489 31501867
    525263 6otr:RR (3.12) BS01 rna ? GO:0003735 ... Q9Z9H5 31501867
    525264 6otr:RS (3.12) BS01 rna ? GO:0003735 ... Q5SHQ4 31501867
    525265 6otr:RS (3.12) BS02 rna ? GO:0003735 ... Q5SHQ4 31501867
    525266 6otr:RT (3.12) BS01 rna ? GO:0003735 ... P60490 31501867
    525267 6otr:RT (3.12) BS02 rna ? GO:0003735 ... P60490 31501867
    525268 6otr:RU (3.12) BS01 rna ? GO:0000027 ... P60491 31501867
    525269 6otr:RV (3.12) BS01 rna ? GO:0003723 ... P60492 31501867
    525270 6otr:RW (3.12) BS01 rna ? GO:0003735 ... Q5SHP3 31501867
    525271 6otr:RX (3.12) BS01 rna ? GO:0003735 ... Q5SHP0 31501867
    525272 6otr:RY (3.12) BS01 rna ? GO:0003723 ... Q5SHP9 31501867
    525273 6otr:RZ (3.12) BS01 rna ? GO:0003723 ... Q5SHZ1 31501867
    525274 6otr:RZ (3.12) BS02 rna ? GO:0003723 ... Q5SHZ1 31501867
    525275 6otr:XB (3.12) BS01 rna ? GO:0003735 ... P80371 31501867
    525276 6otr:XC (3.12) BS01 rna ? GO:0003676 ... P80372 31501867
    525277 6otr:XD (3.12) BS01 rna ? GO:0003723 ... P80373 31501867
    525278 6otr:XD (3.12) BS02 SF4 ? GO:0003723 ... P80373 31501867
    525279 6otr:XD (3.12) BS03 MG ? GO:0003723 ... P80373 31501867
    525280 6otr:XE (3.12) BS01 rna ? GO:0003723 ... Q5SHQ5 31501867
    525281 6otr:XF (3.12) BS01 rna ? GO:0003735 ... Q5SLP8 31501867
    525282 6otr:XG (3.12) BS01 rna ? GO:0000049 ... P17291 31501867
    525283 6otr:XG (3.12) BS02 rna ? GO:0000049 ... P17291 31501867
    525284 6otr:XH (3.12) BS01 rna ? GO:0003735 ... P0DOY9 31501867
    525285 6otr:XI (3.12) BS01 rna ? GO:0000049 ... P80374 31501867
    525286 6otr:XJ (3.12) BS01 rna ? GO:0000049 ... Q5SHN7 31501867
    525287 6otr:XK (3.12) BS01 rna ? GO:0003735 ... P80376 31501867
    525288 6otr:XK (3.12) BS02 MG ? GO:0003735 ... P80376 31501867
    525289 6otr:XL (3.12) BS01 rna ? GO:0000049 ... Q5SHN3 31501867
    525290 6otr:XL (3.12) BS02 MG ? GO:0000049 ... Q5SHN3 31501867
    525291 6otr:XM (3.12) BS01 rna ? GO:0000049 ... P80377 31501867
    525292 6otr:XM (3.12) BS02 MG ? GO:0000049 ... P80377 31501867
    525293 6otr:XN (3.12) BS01 rna ? GO:0003735 ... P0DOY6 31501867
    525294 6otr:XN (3.12) BS02 ZN ? GO:0003735 ... P0DOY6 31501867
    525295 6otr:XO (3.12) BS01 rna ? GO:0003735 ... Q5SJ76 31501867
    525296 6otr:XO (3.12) BS02 rna ? GO:0003735 ... Q5SJ76 31501867
    525297 6otr:XP (3.12) BS01 rna ? GO:0003735 ... Q5SJH3 31501867
    525298 6otr:XQ (3.12) BS01 rna ? GO:0003735 ... P0DOY7 31501867
    525299 6otr:XR (3.12) BS01 rna ? GO:0003735 ... Q5SLQ0 31501867
    525300 6otr:XS (3.12) BS01 rna ? GO:0000028 ... Q5SHP2 31501867
    525301 6otr:XT (3.12) BS01 rna ? GO:0003723 ... P80380 31501867
    525302 6otr:XY (3.12) BS01 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    525303 6otr:XY (3.12) BS02 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    525304 6otr:XY (3.12) BS03 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    525305 6otr:XY (3.12) BS04 A3P 3.1.-.- GO:0004519 ... J7QFC0 31501867
    525306 6otr:Y0 (3.12) BS01 rna ? GO:0003735 ... P60493 31501867
    525307 6otr:Y0 (3.12) BS02 rna ? GO:0003735 ... P60493 31501867
    525308 6otr:Y0 (3.12) BS03 rna ? GO:0003735 ... P60493 31501867
    525309 6otr:Y1 (3.12) BS01 rna ? GO:0003735 ... P60494 31501867
    525310 6otr:Y1 (3.12) BS02 rna ? GO:0003735 ... P60494 31501867
    525311 6otr:Y2 (3.12) BS01 rna ? GO:0003735 ... Q5SHP6 31501867
    525312 6otr:Y3 (3.12) BS01 rna ? GO:0003735 ... Q5SHQ6 31501867
    525313 6otr:Y3 (3.12) BS02 rna ? GO:0003735 ... Q5SHQ6 31501867
    525314 6otr:Y4 (3.12) BS01 rna ? GO:0003735 ... Q5SJE1 31501867
    525315 6otr:Y5 (3.12) BS01 rna ? GO:0003735 ... P80339 31501867
    525316 6otr:Y6 (3.12) BS01 rna ? GO:0000049 ... P35871 31501867
    525317 6otr:Y6 (3.12) BS02 ZN ? GO:0000049 ... P35871 31501867
    525318 6otr:Y7 (3.12) BS01 rna ? GO:0003735 ... P80340 31501867
    525319 6otr:Y8 (3.12) BS01 rna ? GO:0003735 ... Q5SKU1 31501867
    525320 6otr:Y9 (3.12) BS01 rna ? GO:0003735 ... Q5SHR2 31501867
    525321 6otr:Y9 (3.12) BS02 MG ? GO:0003735 ... Q5SHR2 31501867
    525322 6otr:YD (3.12) BS01 rna ? GO:0002181 ... P60405 31501867
    525323 6otr:YD (3.12) BS02 MG ? GO:0002181 ... P60405 31501867
    525324 6otr:YE (3.12) BS01 rna ? GO:0003735 ... Q5SHN8 31501867
    525325 6otr:YF (3.12) BS01 rna ? GO:0003735 ... Q5SHN9 31501867
    525326 6otr:YF (3.12) BS02 MG ? GO:0003735 ... Q5SHN9 31501867
    525327 6otr:YG (3.12) BS01 rna ? GO:0000049 ... Q5SHQ0 31501867
    525328 6otr:YG (3.12) BS02 rna ? GO:0000049 ... Q5SHQ0 31501867
    525329 6otr:YG (3.12) BS03 rna ? GO:0000049 ... Q5SHQ0 31501867
    525330 6otr:YG (3.12) BS04 MG ? GO:0000049 ... Q5SHQ0 31501867
    525331 6otr:YH (3.12) BS01 rna ? GO:0002181 ... P0DOY8 31501867
    525332 6otr:YI (3.12) BS01 rna ? GO:0003735 ... Q5SLQ1 31501867
    525333 6otr:YI (3.12) BS02 rna ? GO:0003735 ... Q5SLQ1 31501867
    525334 6otr:YN (3.12) BS01 rna ? GO:0003729 ... P60488 31501867
    525335 6otr:YO (3.12) BS01 rna ? GO:0003735 ... Q5SHP8 31501867
    525336 6otr:YO (3.12) BS02 rna ? GO:0003735 ... Q5SHP8 31501867
    525337 6otr:YP (3.12) BS01 rna ? GO:0003735 ... Q5SHQ7 31501867
    525338 6otr:YQ (3.12) BS01 rna ? GO:0000049 ... P60489 31501867
    525339 6otr:YQ (3.12) BS02 rna ? GO:0000049 ... P60489 31501867
    525340 6otr:YR (3.12) BS01 rna ? GO:0003735 ... Q9Z9H5 31501867
    525341 6otr:YS (3.12) BS01 rna ? GO:0003735 ... Q5SHQ4 31501867
    525342 6otr:YS (3.12) BS02 rna ? GO:0003735 ... Q5SHQ4 31501867
    525343 6otr:YS (3.12) BS03 MG ? GO:0003735 ... Q5SHQ4 31501867
    525344 6otr:YT (3.12) BS01 rna ? GO:0003735 ... P60490 31501867
    525345 6otr:YT (3.12) BS02 rna ? GO:0003735 ... P60490 31501867
    525346 6otr:YU (3.12) BS01 rna ? GO:0000027 ... P60491 31501867
    525347 6otr:YV (3.12) BS01 rna ? GO:0003723 ... P60492 31501867
    525348 6otr:YW (3.12) BS01 rna ? GO:0003735 ... Q5SHP3 31501867
    525349 6otr:YX (3.12) BS01 rna ? GO:0003735 ... Q5SHP0 31501867
    525350 6otr:YY (3.12) BS01 rna ? GO:0003723 ... Q5SHP9 31501867
    525351 6otr:YZ (3.12) BS01 rna ? GO:0003723 ... Q5SHZ1 31501867
    525352 6otr:YZ (3.12) BS02 rna ? GO:0003723 ... Q5SHZ1 31501867
    525353 6ott:A (2.55) BS01 N7Y 2.4.2.14 GO:0000287 ... P0AG16 31695193
    525354 6ott:B (2.55) BS01 N7Y 2.4.2.14 GO:0000287 ... P0AG16 31695193
    525355 6otu:A (2.25) BS01 G6Q N/A GO:0004347 ... N/A N/A
    525356 6otw:A (2.447) BS01 HEM ? GO:0019825 ... P41261 32217352
    525357 6otw:B (2.447) BS01 HEM ? GO:0005344 ... P41262 32217352
    525358 6otx:A (2.539) BS01 HEM ? GO:0019825 ... P41261 32217352
    525359 6otx:B (2.539) BS01 HEM ? GO:0005344 ... P41262 32217352
    525360 6oty:A (2.598) BS01 HEM ? GO:0019825 ... P41261 32217352
    525361 6oty:B (2.598) BS01 HEM ? GO:0005344 ... P41262 32217352
    525362 6otz:A (2.857) BS01 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 31301259
    525363 6otz:A (2.857) BS02 dna 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 31301259
    525364 6otz:A (2.857) BS03 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 31301259
    525365 6otz:A (2.857) BS04 MG 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 31301259
    525366 6otz:A (2.857) BS05 N8G 2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P04585 31301259
    525367 6ou1:A (1.878) BS01 CA ? N/A Q99972 31270212
    525368 6ou1:B (1.878) BS01 CA ? N/A Q99972 31270212
    525369 6oub:A (1.418) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    525370 6oub:A (1.418) BS02 N7M 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    525371 6oub:A (1.418) BS03 N7M 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    525372 6ouc:A (2.8) BS01 ZN ? GO:0030430 ... Q80RD6 31182604
    525373 6oud:A (1.256) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    525374 6oud:A (1.256) BS02 N7M 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    525375 6oud:A (1.256) BS03 N7M 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    525376 6oue:A (1.415) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    525377 6oue:A (1.415) BS02 N7A 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    525378 6oue:A (1.415) BS03 N7A 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    525379 6ouf:A (1.358) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    525380 6ouf:A (1.358) BS02 N7A 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    525381 6ouf:A (1.358) BS03 N7A 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    525382 6ouh:A (1.449) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    525383 6ouh:A (1.449) BS02 N7D 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    525384 6ouh:A (1.449) BS03 N7D 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    525385 6oui:A (1.528) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    525386 6oui:A (1.528) BS02 N7D 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    525387 6oui:A (1.528) BS03 N7D 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    525388 6ouj:A (1.466) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    525389 6ouj:A (1.466) BS02 N7V 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    525390 6ouk:A (1.498) BS01 ZN 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    525391 6ouk:A (1.498) BS02 N7J 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    525392 6ouk:A (1.498) BS03 N7J 4.2.1.1
    4.2.1.69
    GO:0002009 ... P00918 N/A
    525393 6oul:I (3.4) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 31841111
    525394 6oul:I (3.4) BS02 1N7 2.7.7.6 GO:0000345 ... P0A8V2 31841111
    525395 6oul:J (3.4) BS01 dna N/A GO:0003677 ... N/A 31841111
    525396 6oul:J (3.4) BS02 dna N/A GO:0003677 ... N/A 31841111
    525397 6oul:J (3.4) BS03 MG N/A GO:0003677 ... N/A 31841111
    525398 6oul:J (3.4) BS04 ZN N/A GO:0003677 ... N/A 31841111
    525399 6oul:J (3.4) BS05 ZN N/A GO:0003677 ... N/A 31841111
    525400 6oul:L (3.4) BS01 dna ? GO:0000345 ... P00579 31841111

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).