SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    525801 6oxa:XO (3.25) BS02 rna ? GO:0003735 ... Q5SJ76 31501867
    525802 6oxa:XP (3.25) BS01 rna ? GO:0003735 ... Q5SJH3 31501867
    525803 6oxa:XQ (3.25) BS01 rna ? GO:0003735 ... P0DOY7 31501867
    525804 6oxa:XR (3.25) BS01 rna ? GO:0003735 ... Q5SLQ0 31501867
    525805 6oxa:XS (3.25) BS01 rna ? GO:0000028 ... Q5SHP2 31501867
    525806 6oxa:XT (3.25) BS01 rna ? GO:0003723 ... P80380 31501867
    525807 6oxa:XY (3.25) BS01 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    525808 6oxa:XY (3.25) BS02 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    525809 6oxa:XY (3.25) BS03 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    525810 6oxa:Y0 (3.25) BS01 rna ? GO:0003735 ... P60493 31501867
    525811 6oxa:Y0 (3.25) BS02 rna ? GO:0003735 ... P60493 31501867
    525812 6oxa:Y0 (3.25) BS03 rna ? GO:0003735 ... P60493 31501867
    525813 6oxa:Y1 (3.25) BS01 rna ? GO:0003735 ... P60494 31501867
    525814 6oxa:Y2 (3.25) BS01 rna ? GO:0003735 ... Q5SHP6 31501867
    525815 6oxa:Y3 (3.25) BS01 rna ? GO:0003735 ... Q5SHQ6 31501867
    525816 6oxa:Y3 (3.25) BS02 rna ? GO:0003735 ... Q5SHQ6 31501867
    525817 6oxa:Y4 (3.25) BS01 rna ? GO:0003735 ... Q5SJE1 31501867
    525818 6oxa:Y4 (3.25) BS02 ZN ? GO:0003735 ... Q5SJE1 31501867
    525819 6oxa:Y5 (3.25) BS01 rna ? GO:0003735 ... P80339 31501867
    525820 6oxa:Y6 (3.25) BS01 rna ? GO:0000049 ... P35871 31501867
    525821 6oxa:Y6 (3.25) BS02 ZN ? GO:0000049 ... P35871 31501867
    525822 6oxa:Y7 (3.25) BS01 rna ? GO:0003735 ... P80340 31501867
    525823 6oxa:Y8 (3.25) BS01 rna ? GO:0003735 ... Q5SKU1 31501867
    525824 6oxa:Y9 (3.25) BS01 rna ? GO:0003735 ... Q5SHR2 31501867
    525825 6oxa:Y9 (3.25) BS02 MG ? GO:0003735 ... Q5SHR2 31501867
    525826 6oxa:YD (3.25) BS01 rna ? GO:0002181 ... P60405 31501867
    525827 6oxa:YD (3.25) BS02 MG ? GO:0002181 ... P60405 31501867
    525828 6oxa:YD (3.25) BS03 MG ? GO:0002181 ... P60405 31501867
    525829 6oxa:YD (3.25) BS04 MG ? GO:0002181 ... P60405 31501867
    525830 6oxa:YE (3.25) BS01 rna ? GO:0003735 ... Q5SHN8 31501867
    525831 6oxa:YE (3.25) BS02 MG ? GO:0003735 ... Q5SHN8 31501867
    525832 6oxa:YF (3.25) BS01 rna ? GO:0003735 ... Q5SHN9 31501867
    525833 6oxa:YF (3.25) BS02 MG ? GO:0003735 ... Q5SHN9 31501867
    525834 6oxa:YG (3.25) BS01 rna ? GO:0000049 ... Q5SHQ0 31501867
    525835 6oxa:YG (3.25) BS02 rna ? GO:0000049 ... Q5SHQ0 31501867
    525836 6oxa:YG (3.25) BS03 rna ? GO:0000049 ... Q5SHQ0 31501867
    525837 6oxa:YH (3.25) BS01 rna ? GO:0002181 ... P0DOY8 31501867
    525838 6oxa:YI (3.25) BS01 rna ? GO:0003735 ... Q5SLQ1 31501867
    525839 6oxa:YI (3.25) BS02 rna ? GO:0003735 ... Q5SLQ1 31501867
    525840 6oxa:YN (3.25) BS01 rna ? GO:0003729 ... P60488 31501867
    525841 6oxa:YO (3.25) BS01 rna ? GO:0003735 ... Q5SHP8 31501867
    525842 6oxa:YO (3.25) BS02 rna ? GO:0003735 ... Q5SHP8 31501867
    525843 6oxa:YP (3.25) BS01 rna ? GO:0003735 ... Q5SHQ7 31501867
    525844 6oxa:YQ (3.25) BS01 rna ? GO:0000049 ... P60489 31501867
    525845 6oxa:YQ (3.25) BS02 rna ? GO:0000049 ... P60489 31501867
    525846 6oxa:YQ (3.25) BS03 MG ? GO:0000049 ... P60489 31501867
    525847 6oxa:YR (3.25) BS01 rna ? GO:0003735 ... Q9Z9H5 31501867
    525848 6oxa:YS (3.25) BS01 rna ? GO:0003735 ... Q5SHQ4 31501867
    525849 6oxa:YS (3.25) BS02 rna ? GO:0003735 ... Q5SHQ4 31501867
    525850 6oxa:YT (3.25) BS01 rna ? GO:0003735 ... P60490 31501867
    525851 6oxa:YT (3.25) BS02 rna ? GO:0003735 ... P60490 31501867
    525852 6oxa:YU (3.25) BS01 rna ? GO:0000027 ... P60491 31501867
    525853 6oxa:YV (3.25) BS01 rna ? GO:0003723 ... P60492 31501867
    525854 6oxa:YW (3.25) BS01 rna ? GO:0003735 ... Q5SHP3 31501867
    525855 6oxa:YX (3.25) BS01 rna ? GO:0003735 ... Q5SHP0 31501867
    525856 6oxa:YY (3.25) BS01 rna ? GO:0003723 ... Q5SHP9 31501867
    525857 6oxa:YZ (3.25) BS01 rna ? GO:0003723 ... Q5SHZ1 31501867
    525858 6oxa:YZ (3.25) BS02 rna ? GO:0003723 ... Q5SHZ1 31501867
    525859 6oxc:A (1.9) BS01 B12 5.4.99.2 GO:0003824 ... P9WJK5 31672889
    525860 6oxd:A (2.0) BS01 B12 5.4.99.2 GO:0003824 ... P9WJK5 31672889
    525861 6oxd:A (2.0) BS02 NJS 5.4.99.2 GO:0003824 ... P9WJK5 31672889
    525862 6oxh:A (1.92) BS01 FE2 1.14.11.38 GO:0005575 ... Q4WAW9 31117657
    525863 6oxh:A (1.92) BS02 AKG 1.14.11.38 GO:0005575 ... Q4WAW9 31117657
    525864 6oxh:B (1.92) BS01 FE2 1.14.11.38 GO:0005575 ... Q4WAW9 31117657
    525865 6oxh:B (1.92) BS02 AKG 1.14.11.38 GO:0005575 ... Q4WAW9 31117657
    525866 6oxi:QB (3.495) BS01 rna ? GO:0003735 ... P80371 31501867
    525867 6oxi:QC (3.495) BS01 rna ? GO:0003676 ... P80372 31501867
    525868 6oxi:QD (3.495) BS01 rna ? GO:0003723 ... P80373 31501867
    525869 6oxi:QD (3.495) BS02 SF4 ? GO:0003723 ... P80373 31501867
    525870 6oxi:QE (3.495) BS01 rna ? GO:0003723 ... Q5SHQ5 31501867
    525871 6oxi:QF (3.495) BS01 rna ? GO:0003735 ... Q5SLP8 31501867
    525872 6oxi:QG (3.495) BS01 rna ? GO:0000049 ... P17291 31501867
    525873 6oxi:QH (3.495) BS01 rna ? GO:0003735 ... P0DOY9 31501867
    525874 6oxi:QI (3.495) BS01 rna ? GO:0000049 ... P80374 31501867
    525875 6oxi:QI (3.495) BS02 rna ? GO:0000049 ... P80374 31501867
    525876 6oxi:QJ (3.495) BS01 rna ? GO:0000049 ... Q5SHN7 31501867
    525877 6oxi:QK (3.495) BS01 rna ? GO:0003735 ... P80376 31501867
    525878 6oxi:QK (3.495) BS02 MG ? GO:0003735 ... P80376 31501867
    525879 6oxi:QL (3.495) BS01 rna ? GO:0000049 ... Q5SHN3 31501867
    525880 6oxi:QM (3.495) BS01 rna ? GO:0000049 ... P80377 31501867
    525881 6oxi:QM (3.495) BS02 rna ? GO:0000049 ... P80377 31501867
    525882 6oxi:QN (3.495) BS01 rna ? GO:0003735 ... P0DOY6 31501867
    525883 6oxi:QN (3.495) BS02 ZN ? GO:0003735 ... P0DOY6 31501867
    525884 6oxi:QO (3.495) BS01 rna ? GO:0003735 ... Q5SJ76 31501867
    525885 6oxi:QO (3.495) BS02 rna ? GO:0003735 ... Q5SJ76 31501867
    525886 6oxi:QP (3.495) BS01 rna ? GO:0003735 ... Q5SJH3 31501867
    525887 6oxi:QQ (3.495) BS01 rna ? GO:0003735 ... P0DOY7 31501867
    525888 6oxi:QR (3.495) BS01 rna ? GO:0003735 ... Q5SLQ0 31501867
    525889 6oxi:QS (3.495) BS01 rna ? GO:0000028 ... Q5SHP2 31501867
    525890 6oxi:QT (3.495) BS01 rna ? GO:0003723 ... P80380 31501867
    525891 6oxi:QY (3.495) BS01 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    525892 6oxi:QY (3.495) BS02 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    525893 6oxi:QY (3.495) BS03 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    525894 6oxi:QZ (3.495) BS01 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    525895 6oxi:R0 (3.495) BS01 rna ? GO:0003735 ... P60493 31501867
    525896 6oxi:R0 (3.495) BS02 rna ? GO:0003735 ... P60493 31501867
    525897 6oxi:R0 (3.495) BS03 rna ? GO:0003735 ... P60493 31501867
    525898 6oxi:R1 (3.495) BS01 rna ? GO:0003735 ... P60494 31501867
    525899 6oxi:R2 (3.495) BS01 rna ? GO:0003735 ... Q5SHP6 31501867
    525900 6oxi:R3 (3.495) BS01 rna ? GO:0003735 ... Q5SHQ6 31501867
    525901 6oxi:R3 (3.495) BS02 rna ? GO:0003735 ... Q5SHQ6 31501867
    525902 6oxi:R4 (3.495) BS01 rna ? GO:0003735 ... Q5SJE1 31501867
    525903 6oxi:R5 (3.495) BS01 rna ? GO:0003735 ... P80339 31501867
    525904 6oxi:R5 (3.495) BS02 ZN ? GO:0003735 ... P80339 31501867
    525905 6oxi:R6 (3.495) BS01 rna ? GO:0000049 ... P35871 31501867
    525906 6oxi:R6 (3.495) BS02 ZN ? GO:0000049 ... P35871 31501867
    525907 6oxi:R7 (3.495) BS01 rna ? GO:0003735 ... P80340 31501867
    525908 6oxi:R8 (3.495) BS01 rna ? GO:0003735 ... Q5SKU1 31501867
    525909 6oxi:R9 (3.495) BS01 rna ? GO:0003735 ... Q5SHR2 31501867
    525910 6oxi:R9 (3.495) BS02 ZN ? GO:0003735 ... Q5SHR2 31501867
    525911 6oxi:RD (3.495) BS01 rna ? GO:0002181 ... P60405 31501867
    525912 6oxi:RD (3.495) BS02 rna ? GO:0002181 ... P60405 31501867
    525913 6oxi:RE (3.495) BS01 rna ? GO:0003735 ... Q5SHN8 31501867
    525914 6oxi:RF (3.495) BS01 rna ? GO:0003735 ... Q5SHN9 31501867
    525915 6oxi:RG (3.495) BS01 rna ? GO:0000049 ... Q5SHQ0 31501867
    525916 6oxi:RG (3.495) BS02 rna ? GO:0000049 ... Q5SHQ0 31501867
    525917 6oxi:RG (3.495) BS03 rna ? GO:0000049 ... Q5SHQ0 31501867
    525918 6oxi:RH (3.495) BS01 rna ? GO:0002181 ... P0DOY8 31501867
    525919 6oxi:RI (3.495) BS01 rna ? GO:0003735 ... Q5SLQ1 31501867
    525920 6oxi:RN (3.495) BS01 rna ? GO:0003729 ... P60488 31501867
    525921 6oxi:RO (3.495) BS01 rna ? GO:0003735 ... Q5SHP8 31501867
    525922 6oxi:RO (3.495) BS02 rna ? GO:0003735 ... Q5SHP8 31501867
    525923 6oxi:RP (3.495) BS01 rna ? GO:0003735 ... Q5SHQ7 31501867
    525924 6oxi:RQ (3.495) BS01 rna ? GO:0000049 ... P60489 31501867
    525925 6oxi:RQ (3.495) BS02 rna ? GO:0000049 ... P60489 31501867
    525926 6oxi:RQ (3.495) BS03 rna ? GO:0000049 ... P60489 31501867
    525927 6oxi:RQ (3.495) BS04 MG ? GO:0000049 ... P60489 31501867
    525928 6oxi:RQ (3.495) BS05 MG ? GO:0000049 ... P60489 31501867
    525929 6oxi:RR (3.495) BS01 rna ? GO:0003735 ... Q9Z9H5 31501867
    525930 6oxi:RS (3.495) BS01 rna ? GO:0003735 ... Q5SHQ4 31501867
    525931 6oxi:RS (3.495) BS02 rna ? GO:0003735 ... Q5SHQ4 31501867
    525932 6oxi:RT (3.495) BS01 rna ? GO:0003735 ... P60490 31501867
    525933 6oxi:RT (3.495) BS02 rna ? GO:0003735 ... P60490 31501867
    525934 6oxi:RU (3.495) BS01 rna ? GO:0000027 ... P60491 31501867
    525935 6oxi:RV (3.495) BS01 rna ? GO:0003723 ... P60492 31501867
    525936 6oxi:RW (3.495) BS01 rna ? GO:0003735 ... Q5SHP3 31501867
    525937 6oxi:RX (3.495) BS01 rna ? GO:0003735 ... Q5SHP0 31501867
    525938 6oxi:RY (3.495) BS01 rna ? GO:0003723 ... Q5SHP9 31501867
    525939 6oxi:RY (3.495) BS02 MG ? GO:0003723 ... Q5SHP9 31501867
    525940 6oxi:RZ (3.495) BS01 rna ? GO:0003723 ... Q5SHZ1 31501867
    525941 6oxi:RZ (3.495) BS02 rna ? GO:0003723 ... Q5SHZ1 31501867
    525942 6oxi:XB (3.495) BS01 rna ? GO:0003735 ... P80371 31501867
    525943 6oxi:XC (3.495) BS01 rna ? GO:0003676 ... P80372 31501867
    525944 6oxi:XD (3.495) BS01 rna ? GO:0003723 ... P80373 31501867
    525945 6oxi:XD (3.495) BS02 SF4 ? GO:0003723 ... P80373 31501867
    525946 6oxi:XE (3.495) BS01 rna ? GO:0003723 ... Q5SHQ5 31501867
    525947 6oxi:XF (3.495) BS01 rna ? GO:0003735 ... Q5SLP8 31501867
    525948 6oxi:XF (3.495) BS02 MG ? GO:0003735 ... Q5SLP8 31501867
    525949 6oxi:XG (3.495) BS01 rna ? GO:0000049 ... P17291 31501867
    525950 6oxi:XH (3.495) BS01 rna ? GO:0003735 ... P0DOY9 31501867
    525951 6oxi:XI (3.495) BS01 rna ? GO:0000049 ... P80374 31501867
    525952 6oxi:XJ (3.495) BS01 rna ? GO:0000049 ... Q5SHN7 31501867
    525953 6oxi:XK (3.495) BS01 rna ? GO:0003735 ... P80376 31501867
    525954 6oxi:XK (3.495) BS02 MG ? GO:0003735 ... P80376 31501867
    525955 6oxi:XL (3.495) BS01 rna ? GO:0000049 ... Q5SHN3 31501867
    525956 6oxi:XM (3.495) BS01 rna ? GO:0000049 ... P80377 31501867
    525957 6oxi:XM (3.495) BS02 rna ? GO:0000049 ... P80377 31501867
    525958 6oxi:XM (3.495) BS03 MG ? GO:0000049 ... P80377 31501867
    525959 6oxi:XN (3.495) BS01 rna ? GO:0003735 ... P0DOY6 31501867
    525960 6oxi:XN (3.495) BS02 ZN ? GO:0003735 ... P0DOY6 31501867
    525961 6oxi:XO (3.495) BS01 rna ? GO:0003735 ... Q5SJ76 31501867
    525962 6oxi:XO (3.495) BS02 rna ? GO:0003735 ... Q5SJ76 31501867
    525963 6oxi:XP (3.495) BS01 rna ? GO:0003735 ... Q5SJH3 31501867
    525964 6oxi:XQ (3.495) BS01 rna ? GO:0003735 ... P0DOY7 31501867
    525965 6oxi:XR (3.495) BS01 rna ? GO:0003735 ... Q5SLQ0 31501867
    525966 6oxi:XS (3.495) BS01 rna ? GO:0000028 ... Q5SHP2 31501867
    525967 6oxi:XT (3.495) BS01 rna ? GO:0003723 ... P80380 31501867
    525968 6oxi:XY (3.495) BS01 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    525969 6oxi:XY (3.495) BS02 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    525970 6oxi:XY (3.495) BS03 rna 3.1.-.- GO:0004519 ... J7QFC0 31501867
    525971 6oxi:Y0 (3.495) BS01 rna ? GO:0003735 ... P60493 31501867
    525972 6oxi:Y0 (3.495) BS02 rna ? GO:0003735 ... P60493 31501867
    525973 6oxi:Y0 (3.495) BS03 rna ? GO:0003735 ... P60493 31501867
    525974 6oxi:Y1 (3.495) BS01 rna ? GO:0003735 ... P60494 31501867
    525975 6oxi:Y2 (3.495) BS01 rna ? GO:0003735 ... Q5SHP6 31501867
    525976 6oxi:Y3 (3.495) BS01 rna ? GO:0003735 ... Q5SHQ6 31501867
    525977 6oxi:Y3 (3.495) BS02 rna ? GO:0003735 ... Q5SHQ6 31501867
    525978 6oxi:Y4 (3.495) BS01 rna ? GO:0003735 ... Q5SJE1 31501867
    525979 6oxi:Y5 (3.495) BS01 rna ? GO:0003735 ... P80339 31501867
    525980 6oxi:Y6 (3.495) BS01 rna ? GO:0000049 ... P35871 31501867
    525981 6oxi:Y6 (3.495) BS02 ZN ? GO:0000049 ... P35871 31501867
    525982 6oxi:Y7 (3.495) BS01 rna ? GO:0003735 ... P80340 31501867
    525983 6oxi:Y8 (3.495) BS01 rna ? GO:0003735 ... Q5SKU1 31501867
    525984 6oxi:Y9 (3.495) BS01 rna ? GO:0003735 ... Q5SHR2 31501867
    525985 6oxi:Y9 (3.495) BS02 MG ? GO:0003735 ... Q5SHR2 31501867
    525986 6oxi:YD (3.495) BS01 rna ? GO:0002181 ... P60405 31501867
    525987 6oxi:YD (3.495) BS02 MG ? GO:0002181 ... P60405 31501867
    525988 6oxi:YD (3.495) BS03 MG ? GO:0002181 ... P60405 31501867
    525989 6oxi:YE (3.495) BS01 rna ? GO:0003735 ... Q5SHN8 31501867
    525990 6oxi:YF (3.495) BS01 rna ? GO:0003735 ... Q5SHN9 31501867
    525991 6oxi:YG (3.495) BS01 rna ? GO:0000049 ... Q5SHQ0 31501867
    525992 6oxi:YG (3.495) BS02 rna ? GO:0000049 ... Q5SHQ0 31501867
    525993 6oxi:YG (3.495) BS03 rna ? GO:0000049 ... Q5SHQ0 31501867
    525994 6oxi:YG (3.495) BS04 MG ? GO:0000049 ... Q5SHQ0 31501867
    525995 6oxi:YH (3.495) BS01 rna ? GO:0002181 ... P0DOY8 31501867
    525996 6oxi:YI (3.495) BS01 rna ? GO:0003735 ... Q5SLQ1 31501867
    525997 6oxi:YI (3.495) BS02 rna ? GO:0003735 ... Q5SLQ1 31501867
    525998 6oxi:YN (3.495) BS01 rna ? GO:0003729 ... P60488 31501867
    525999 6oxi:YO (3.495) BS01 rna ? GO:0003735 ... Q5SHP8 31501867
    526000 6oxi:YO (3.495) BS02 rna ? GO:0003735 ... Q5SHP8 31501867

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).