SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    532001 6pt5:D (2.304) BS01 1S7 3.5.2.6 GO:0005886 ... Q6XEC0 31872762
    532002 6pt6:A (2.25) BS01 G4S N/A N/A N/A 31886414
    532003 6pt6:A (2.25) BS02 DGS N/A N/A N/A 31886414
    532004 6pt6:A (2.25) BS03 CA N/A N/A N/A 31886414
    532005 6pt6:B (2.25) BS01 G4S N/A N/A N/A 31886414
    532006 6pt6:B (2.25) BS02 DGS N/A N/A N/A 31886414
    532007 6pt6:B (2.25) BS03 CA N/A N/A N/A 31886414
    532008 6pt7:A (2.15) BS01 NAP ? GO:0000166 ... A0A031LXI5 N/A
    532009 6pt7:A (2.15) BS02 HEM ? GO:0000166 ... A0A031LXI5 N/A
    532010 6pt8:A (1.4) BS01 AAM ? GO:0008939 ... Q58993 36229494
    532011 6pt8:A (1.4) BS02 NIO ? GO:0008939 ... Q58993 36229494
    532012 6pt8:A (1.4) BS03 PO4 ? GO:0008939 ... Q58993 36229494
    532013 6pt8:B (1.4) BS01 NIO ? GO:0008939 ... Q58993 36229494
    532014 6pt8:B (1.4) BS02 AAM ? GO:0008939 ... Q58993 36229494
    532015 6pt8:B (1.4) BS03 PO4 ? GO:0008939 ... Q58993 36229494
    532016 6pt9:A (1.66) BS01 G4S N/A N/A N/A 31886414
    532017 6pt9:A (1.66) BS02 9RN N/A N/A N/A 31886414
    532018 6pt9:A (1.66) BS03 CA N/A N/A N/A 31886414
    532019 6pt9:B (1.66) BS01 9RN N/A N/A N/A 31886414
    532020 6pt9:B (1.66) BS02 CA N/A N/A N/A 31886414
    532021 6pta:A (2.5) BS01 GDP ? GO:0003924 ... P22274 N/A
    532022 6pta:B (2.5) BS01 GDP ? GO:0003924 ... P22274 N/A
    532023 6pta:C (2.5) BS01 GDP ? GO:0003924 ... P22274 N/A
    532024 6pta:D (2.5) BS01 GDP ? GO:0003924 ... P22274 N/A
    532025 6ptb:A (2.15) BS01 peptide ? N/A P04439 31555277
    532026 6ptb:D (2.15) BS01 peptide ? N/A P04439 31555277
    532027 6pte:A (1.901) BS01 peptide ? N/A P04439 31555277
    532028 6pte:E (1.901) BS01 peptide ? N/A P04439 31555277
    532029 6pte:H (1.901) BS01 peptide ? N/A P04439 31555277
    532030 6pte:K (1.901) BS01 peptide ? N/A P04439 31555277
    532031 6pth:A (3.05) BS01 peptide ? GO:0003677 ... Q9I7C4 N/A
    532032 6pti:A (1.7) BS01 PO4 ? GO:0004867 ... P00974 2448484
    532033 6ptk:A (1.75) BS01 G4S N/A N/A N/A 31886414
    532034 6ptk:A (1.75) BS02 CA N/A N/A N/A 31886414
    532035 6ptk:A (1.75) BS03 CA N/A N/A N/A 31886414
    532036 6ptk:A (1.75) BS04 CA N/A N/A N/A 31886414
    532037 6ptk:B (1.75) BS01 CA N/A N/A N/A 31886414
    532038 6ptk:B (1.75) BS02 CA N/A N/A N/A 31886414
    532039 6ptk:B (1.75) BS03 CA N/A N/A N/A 31886414
    532040 6ptk:B (1.75) BS04 9RN N/A N/A N/A 31886414
    532041 6ptk:B (1.75) BS05 G4S N/A N/A N/A 31886414
    532042 6ptk:C (1.75) BS01 CA N/A N/A N/A 31886414
    532043 6ptk:C (1.75) BS02 CA N/A N/A N/A 31886414
    532044 6ptk:C (1.75) BS03 CA N/A N/A N/A 31886414
    532045 6ptk:C (1.75) BS04 9RN N/A N/A N/A 31886414
    532046 6ptk:C (1.75) BS05 G4S N/A N/A N/A 31886414
    532047 6ptk:D (1.75) BS01 CA N/A N/A N/A 31886414
    532048 6ptk:D (1.75) BS02 CA N/A N/A N/A 31886414
    532049 6ptk:D (1.75) BS03 CA N/A N/A N/A 31886414
    532050 6ptk:D (1.75) BS04 9RN N/A N/A N/A 31886414
    532051 6ptk:D (1.75) BS05 G4S N/A N/A N/A 31886414
    532052 6ptn:2 (5.8) BS01 ATP 3.6.4.12 GO:0000727 ... P29469 31589141
    532053 6ptn:2 (5.8) BS02 ATP 3.6.4.12 GO:0000727 ... P29469 31589141
    532054 6ptn:3 (5.8) BS01 ATP 3.6.4.12 GO:0000727 ... P24279 31589141
    532055 6ptn:5 (5.8) BS01 ATP 3.6.4.12 GO:0000727 ... P29496 31589141
    532056 6ptn:5 (5.8) BS02 ATP 3.6.4.12 GO:0000727 ... P29496 31589141
    532057 6ptn:6 (5.8) BS01 ATP 3.6.4.12 GO:0000727 ... P53091 31589141
    532058 6ptn:i (5.8) BS01 ATP 3.6.4.12 GO:0000727 ... P29469 31589141
    532059 6ptn:i (5.8) BS02 ATP 3.6.4.12 GO:0000727 ... P29469 31589141
    532060 6ptn:j (5.8) BS01 ATP 3.6.4.12 GO:0000727 ... P24279 31589141
    532061 6ptn:l (5.8) BS01 ATP 3.6.4.12 GO:0000727 ... P29496 31589141
    532062 6ptn:l (5.8) BS02 ATP 3.6.4.12 GO:0000727 ... P29496 31589141
    532063 6ptn:m (5.8) BS01 ATP 3.6.4.12 GO:0000727 ... P53091 31589141
    532064 6pto:2 (7.0) BS01 ATP 3.6.4.12 GO:0000727 ... P29469 31589141
    532065 6pto:2 (7.0) BS02 ATP 3.6.4.12 GO:0000727 ... P29469 31589141
    532066 6pto:3 (7.0) BS01 ATP 3.6.4.12 GO:0000727 ... P24279 31589141
    532067 6pto:5 (7.0) BS01 ATP 3.6.4.12 GO:0000727 ... P29496 31589141
    532068 6pto:5 (7.0) BS02 ATP 3.6.4.12 GO:0000727 ... P29496 31589141
    532069 6pto:6 (7.0) BS01 ATP 3.6.4.12 GO:0000727 ... P53091 31589141
    532070 6pto:h (7.0) BS01 ATP 3.6.4.12 GO:0000727 ... P29469 31589141
    532071 6pto:h (7.0) BS02 ATP 3.6.4.12 GO:0000727 ... P29469 31589141
    532072 6pto:i (7.0) BS01 ATP 3.6.4.12 GO:0000727 ... P24279 31589141
    532073 6pto:k (7.0) BS01 ATP 3.6.4.12 GO:0000727 ... P29496 31589141
    532074 6pto:k (7.0) BS02 ATP 3.6.4.12 GO:0000727 ... P29496 31589141
    532075 6pto:l (7.0) BS01 ATP 3.6.4.12 GO:0000727 ... P53091 31589141
    532076 6ptp:A (1.85) BS01 KVS ? GO:0004190 ... Q7SSI0 32478251
    532077 6ptp:B (1.85) BS01 KVS ? GO:0004190 ... Q7SSI0 32478251
    532078 6ptq:A (2.1) BS01 EL5 2.7.13.3 GO:0006355 ... Q09E27 31559319
    532079 6ptq:B (2.1) BS01 EL5 2.7.13.3 GO:0006355 ... Q09E27 31559319
    532080 6ptr:A (1.75) BS01 peptide ? GO:0003677 ... J1IY24 N/A
    532081 6ptr:B (1.75) BS01 peptide ? GO:0003677 ... J1IY24 N/A
    532082 6pts:B (-1.00) BS01 17F 3.6.5.2 GO:0000139 ... P01116 32414921
    532083 6pts:B (-1.00) BS02 GNP 3.6.5.2 GO:0000139 ... P01116 32414921
    532084 6pts:B (-1.00) BS03 MG 3.6.5.2 GO:0000139 ... P01116 32414921
    532085 6pts:D (-1.00) BS01 ZN 2.7.11.1 GO:0007165 ... P04049 32414921
    532086 6pts:D (-1.00) BS02 ZN 2.7.11.1 GO:0007165 ... P04049 32414921
    532087 6ptt:A (1.84) BS01 CUA 7.1.1.9 GO:0004129 ... Q5SJ80 31897463
    532088 6ptt:B (1.84) BS01 CUA 7.1.1.9 GO:0004129 ... Q5SJ80 31897463
    532089 6ptu:A (2.004) BS01 ID1 3.5.2.6 GO:0005886 ... Q6XEC0 31872762
    532090 6ptu:B (2.004) BS01 ID1 3.5.2.6 GO:0005886 ... Q6XEC0 31872762
    532091 6ptu:C (2.004) BS01 ID1 3.5.2.6 GO:0005886 ... Q6XEC0 31872762
    532092 6ptu:D (2.004) BS01 ID1 3.5.2.6 GO:0005886 ... Q6XEC0 31872762
    532093 6ptv:B (1.85) BS01 peptide ? GO:0003677 ... A0A0H3AWV3 N/A
    532094 6ptv:C (1.85) BS01 peptide ? GO:0003677 ... A0A0H3AWV3 N/A
    532095 6ptw:B (-1.00) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 32414921
    532096 6ptw:B (-1.00) BS02 MG 3.6.5.2 GO:0000139 ... P01116 32414921
    532097 6ptw:D (-1.00) BS01 ZN 2.7.11.1 GO:0007165 ... P04049 32414921
    532098 6ptw:D (-1.00) BS02 ZN 2.7.11.1 GO:0007165 ... P04049 32414921
    532099 6ptx:A (1.65) BS01 EL5 2.7.13.3 GO:0006355 ... Q09E27 31559319
    532100 6ptx:B (1.65) BS01 EL5 2.7.13.3 GO:0006355 ... Q09E27 31559319
    532101 6pty:A (1.98) BS01 CUA 7.1.1.9 GO:0004129 ... Q5SJ80 31897463
    532102 6pty:B (1.98) BS01 CUA 7.1.1.9 GO:0004129 ... Q5SJ80 31897463
    532103 6ptz:A (1.793) BS01 FAD ? GO:0000166 ... A0A2I0LZR8 31484780
    532104 6pu0:A (1.8979) BS01 FAD ? GO:0000166 ... A0A2I0LZR8 31484780
    532105 6pu1:A (2.28) BS01 peptide ? GO:0016032 ... P12493 N/A
    532106 6pu2:A (2.2) BS01 EL5 2.7.13.3 GO:0006355 ... Q09E27 31559319
    532107 6pu2:B (2.2) BS01 EL5 2.7.13.3 GO:0006355 ... Q09E27 31559319
    532108 6pu3:A (1.8) BS01 peptide N/A GO:0043190 ... N/A 31358613
    532109 6pu4:A (2.1) BS01 CA 3.4.21.64 GO:0004252 ... P06873 31576224
    532110 6pu4:A (2.1) BS02 CA 3.4.21.64 GO:0004252 ... P06873 31576224
    532111 6pu4:A (2.1) BS03 CA 3.4.21.64 GO:0004252 ... P06873 31576224
    532112 6pu5:A (2.7) BS01 CA 3.4.21.64 GO:0004252 ... P06873 31576224
    532113 6pu6:A (2.293) BS01 NCN ? GO:0008939 ... Q58993 36229494
    532114 6pu6:B (2.293) BS01 RBZ ? GO:0008939 ... Q58993 36229494
    532115 6pu6:B (2.293) BS02 NIO ? GO:0008939 ... Q58993 36229494
    532116 6pu7:A (2.43) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 31749906
    532117 6pu7:A (2.43) BS02 OY4 1.13.11.52 GO:0002376 ... P14902 31749906 MOAD: ic50=35nM
    BindingDB: IC50=409nM
    532118 6pu7:B (2.43) BS01 HEM 1.13.11.52 GO:0002376 ... P14902 31749906
    532119 6pu7:B (2.43) BS02 OY4 1.13.11.52 GO:0002376 ... P14902 31749906 MOAD: ic50=35nM
    BindingDB: IC50=409nM
    532120 6pu8:A (1.8) BS01 P3V ? GO:0004190 ... Q7SSI0 32478251
    532121 6pu8:B (1.8) BS01 P3V ? GO:0004190 ... Q7SSI0 32478251
    532122 6pub:A (2.43) BS01 CVI 2.3.1.28 GO:0016740 ... Q9KMN1 N/A
    532123 6puc:A (1.85) BS01 Q87 ? N/A Q95460 32123373
    532124 6puc:C (1.85) BS01 Q87 ? N/A Q95460 32123373
    532125 6pud:A (1.8) BS01 OYD ? N/A Q95460 32123373
    532126 6pud:C (1.8) BS01 OYD ? N/A Q95460 32123373
    532127 6pue:A (1.9) BS01 Q7J ? N/A Q95460 32123373
    532128 6pue:C (1.9) BS01 Q7J ? N/A Q95460 32123373
    532129 6pue:E (1.9) BS01 Q7J N/A N/A N/A 32123373
    532130 6pue:H (1.9) BS01 Q7J N/A N/A N/A 32123373
    532131 6puf:A (1.92) BS01 2LJ ? N/A Q95460 32123373
    532132 6puf:C (1.92) BS01 2LJ ? N/A Q95460 32123373
    532133 6pug:A (1.8) BS01 OZD ? N/A Q95460 32123373
    532134 6pug:C (1.8) BS01 OZD ? N/A Q95460 32123373
    532135 6puh:A (1.88) BS01 OYG ? N/A Q95460 32123373
    532136 6puh:C (1.88) BS01 OYG ? N/A Q95460 32123373
    532137 6pui:A (1.96) BS01 Q7P ? N/A Q95460 32123373
    532138 6pui:C (1.96) BS01 Q7P ? N/A Q95460 32123373
    532139 6puj:A (1.92) BS01 Q7S ? N/A Q95460 32123373
    532140 6puj:C (1.92) BS01 Q7S ? N/A Q95460 32123373
    532141 6puk:A (2.08) BS01 OYV ? N/A Q95460 32123373
    532142 6puk:C (2.08) BS01 OYV ? N/A Q95460 32123373
    532143 6pul:A (1.84) BS01 Q81 ? N/A Q95460 32123373
    532144 6pul:C (1.84) BS01 Q81 ? N/A Q95460 32123373
    532145 6pum:A (1.96) BS01 Q84 ? N/A Q95460 32123373
    532146 6pum:C (1.96) BS01 Q84 ? N/A Q95460 32123373
    532147 6pun:A (2.099) BS01 rna ? GO:0003723 ... Q09312 31397673
    532148 6pun:A (2.099) BS02 peptide ? GO:0003723 ... Q09312 31397673
    532149 6pun:C (2.099) BS01 rna ? GO:0003723 ... Q09312 31397673
    532150 6pun:C (2.099) BS02 peptide ? GO:0003723 ... Q09312 31397673
    532151 6pup:A (1.89) BS01 MN 4.1.3.44 GO:0008033 ... B6K6D6 35693892
    532152 6pup:A (1.89) BS02 MN 4.1.3.44 GO:0008033 ... B6K6D6 35693892
    532153 6pup:A (1.89) BS03 FMN 4.1.3.44 GO:0008033 ... B6K6D6 35693892
    532154 6puq:A (1.56) BS01 FMN 4.1.3.44 GO:0008033 ... B6K6D6 35693892
    532155 6puq:A (1.56) BS02 MG 4.1.3.44 GO:0008033 ... B6K6D6 35693892
    532156 6puq:A (1.56) BS03 MG 4.1.3.44 GO:0008033 ... B6K6D6 35693892
    532157 6puq:A (1.56) BS04 MG 4.1.3.44 GO:0008033 ... B6K6D6 35693892
    532158 6puq:A (1.56) BS05 MG 4.1.3.44 GO:0008033 ... B6K6D6 35693892
    532159 6puq:A (1.56) BS06 MG 4.1.3.44 GO:0008033 ... B6K6D6 35693892
    532160 6pur:A (4.4) BS01 APR ? GO:0001659 ... O94759 31513012
    532161 6pur:A (4.4) BS02 APR ? GO:0001659 ... O94759 31513012
    532162 6pur:B (4.4) BS01 APR ? GO:0001659 ... O94759 31513012
    532163 6pur:B (4.4) BS02 APR ? GO:0001659 ... O94759 31513012
    532164 6pur:C (4.4) BS01 APR ? GO:0001659 ... O94759 31513012
    532165 6pur:C (4.4) BS02 APR ? GO:0001659 ... O94759 31513012
    532166 6pur:D (4.4) BS01 APR ? GO:0001659 ... O94759 31513012
    532167 6pur:D (4.4) BS02 APR ? GO:0001659 ... O94759 31513012
    532168 6pus:A (3.7) BS01 APR ? GO:0001659 ... O94759 31513012
    532169 6pus:A (3.7) BS02 APR ? GO:0001659 ... O94759 31513012
    532170 6pus:A (3.7) BS03 CA ? GO:0001659 ... O94759 31513012
    532171 6pus:B (3.7) BS01 APR ? GO:0001659 ... O94759 31513012
    532172 6pus:B (3.7) BS02 APR ? GO:0001659 ... O94759 31513012
    532173 6pus:B (3.7) BS03 CA ? GO:0001659 ... O94759 31513012
    532174 6pus:C (3.7) BS01 APR ? GO:0001659 ... O94759 31513012
    532175 6pus:C (3.7) BS02 APR ? GO:0001659 ... O94759 31513012
    532176 6pus:C (3.7) BS03 CA ? GO:0001659 ... O94759 31513012
    532177 6pus:D (3.7) BS01 APR ? GO:0001659 ... O94759 31513012
    532178 6pus:D (3.7) BS02 APR ? GO:0001659 ... O94759 31513012
    532179 6pus:D (3.7) BS03 CA ? GO:0001659 ... O94759 31513012
    532180 6put:A (2.9) BS01 dna ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P39476
    32001521
    532181 6put:A (2.9) BS02 dna ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P39476
    32001521
    532182 6put:A (2.9) BS03 CA ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P39476
    32001521
    532183 6put:A (2.9) BS04 CA ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P39476
    32001521
    532184 6put:A (2.9) BS05 ZN ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P39476
    32001521
    532185 6put:B (2.9) BS01 ZN ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P39476
    32001521
    532186 6put:C (2.9) BS01 dna ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P39476
    32001521
    532187 6put:D (2.9) BS01 dna ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P39476
    32001521
    532188 6puu:A (3.7) BS01 CV1 ? GO:0001659 ... O94759 31513012
    532189 6puu:A (3.7) BS02 CA ? GO:0001659 ... O94759 31513012
    532190 6puu:B (3.7) BS01 CV1 ? GO:0001659 ... O94759 31513012
    532191 6puu:B (3.7) BS02 CA ? GO:0001659 ... O94759 31513012
    532192 6puu:C (3.7) BS01 CV1 ? GO:0001659 ... O94759 31513012
    532193 6puu:C (3.7) BS02 CA ? GO:0001659 ... O94759 31513012
    532194 6puu:D (3.7) BS01 CV1 ? GO:0001659 ... O94759 31513012
    532195 6puu:D (3.7) BS02 CA ? GO:0001659 ... O94759 31513012
    532196 6puv:A (1.2) BS01 CA ? N/A Q8IUN9 33724805
    532197 6puw:A (2.9) BS01 dna ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P39476
    32001521
    532198 6puw:A (2.9) BS02 dna ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P39476
    32001521
    532199 6puw:A (2.9) BS03 MG ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P39476
    32001521
    532200 6puw:A (2.9) BS04 MG ?
    2.7.7.-
    2.7.7.49
    2.7.7.7
    3.1.-.-
    3.1.13.2
    3.1.26.13
    3.4.23.16
    GO:0003676 ... P12497
    P39476
    32001521

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).