SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    534001 6q8y:AQ (3.1) BS01 rna ? GO:0002181 ... P05748 30911188
    534002 6q8y:AQ (3.1) BS02 rna ? GO:0002181 ... P05748 30911188
    534003 6q8y:AR (3.1) BS01 rna ? GO:0002181 ... P02406 30911188
    534004 6q8y:AT (3.1) BS01 rna ? GO:0002181 ... P0CX25 30911188
    534005 6q8y:AT (3.1) BS02 ZN ? GO:0002181 ... P0CX25 30911188
    534006 6q8y:AU (3.1) BS01 rna ? GO:0000470 ... P26784 30911188
    534007 6q8y:AV (3.1) BS01 rna ? GO:0002181 ... P05747 30911188
    534008 6q8y:AW (3.1) BS01 rna ? GO:0002181 ... P0CX45 30911188
    534009 6q8y:AW (3.1) BS02 rna ? GO:0002181 ... P0CX45 30911188
    534010 6q8y:AX (3.1) BS01 rna ? GO:0000448 ... P05740 30911188
    534011 6q8y:AX (3.1) BS02 rna ? GO:0000448 ... P05740 30911188
    534012 6q8y:AY (3.1) BS01 rna ? GO:0002181 ... P14120 30911188
    534013 6q8y:B (3.1) BS01 rna ? GO:0003723 ... A0A1L4AA68 30911188
    534014 6q8y:B (3.1) BS02 rna ? GO:0003723 ... A0A1L4AA68 30911188
    534015 6q8y:B (3.1) BS03 rna ? GO:0003723 ... A0A1L4AA68 30911188
    534016 6q8y:BA (3.1) BS01 rna ? GO:0000027 ... P14126 30911188
    534017 6q8y:BB (3.1) BS01 rna ? GO:0002181 ... P0CX49 30911188
    534018 6q8y:BC (3.1) BS01 rna ? GO:0002181 ... P0C2H8 30911188
    534019 6q8y:BD (3.1) BS01 rna ? GO:0000027 ... P41805 30911188
    534020 6q8y:BD (3.1) BS02 rna ? GO:0000027 ... P41805 30911188
    534021 6q8y:BE (3.1) BS01 rna ? GO:0002181 ... P10664 30911188
    534022 6q8y:BE (3.1) BS02 rna ? GO:0002181 ... P10664 30911188
    534023 6q8y:BF (3.1) BS01 rna ? GO:0002181 ... P0CX82 30911188
    534024 6q8y:BF (3.1) BS02 rna ? GO:0002181 ... P0CX82 30911188
    534025 6q8y:BG (3.1) BS01 rna ? GO:0002181 ... P38061 30911188
    534026 6q8y:BH (3.1) BS01 rna ? GO:0002181 ... P0CX23 30911188
    534027 6q8y:BH (3.1) BS02 rna ? GO:0002181 ... P0CX23 30911188
    534028 6q8y:BI (3.1) BS01 rna ? GO:0000027 ... P26321 30911188
    534029 6q8y:BI (3.1) BS02 rna ? GO:0000027 ... P26321 30911188
    534030 6q8y:BJ (3.1) BS01 rna ? GO:0002181 ... Q02753 30911188
    534031 6q8y:BJ (3.1) BS02 rna ? GO:0002181 ... Q02753 30911188
    534032 6q8y:BK (3.1) BS01 rna ? GO:0000027 ... P05744 30911188
    534033 6q8y:BL (3.1) BS01 rna ? GO:0003735 ... P05749 30911188
    534034 6q8y:BM (3.1) BS01 rna ? GO:0000027 ... Q02326 30911188
    534035 6q8y:BN (3.1) BS01 rna ? GO:0002181 ... P87262 30911188
    534036 6q8y:BN (3.1) BS02 ZN ? GO:0002181 ... P87262 30911188
    534037 6q8y:BO (3.1) BS01 rna ? GO:0000463 ... P05737 30911188
    534038 6q8y:BO (3.1) BS02 rna ? GO:0000463 ... P05737 30911188
    534039 6q8y:BP (3.1) BS01 rna ? GO:0000463 ... P0CX84 30911188
    534040 6q8y:BP (3.1) BS02 rna ? GO:0000463 ... P0CX84 30911188
    534041 6q8y:C (3.1) BS01 rna ? GO:0000054 ... Q08745 30911188
    534042 6q8y:D (3.1) BS01 rna ? GO:0003735 ... P48589 30911188
    534043 6q8y:E (3.1) BS01 rna ? GO:0003723 ... Q01855 30911188
    534044 6q8y:F (3.1) BS01 rna ? GO:0000462 ... P0CX51 30911188
    534045 6q8y:G (3.1) BS01 rna ? GO:0000028 ... P02407 30911188
    534046 6q8y:H (3.1) BS01 rna ? GO:0000054 ... P0CX55 30911188
    534047 6q8y:H (3.1) BS02 rna ? GO:0000054 ... P0CX55 30911188
    534048 6q8y:I (3.1) BS01 rna ? GO:0000028 ... P07280 30911188
    534049 6q8y:J (3.1) BS01 rna ? GO:0003723 ... P38701 30911188
    534050 6q8y:K (3.1) BS01 rna ? N/A Q3E792 30911188
    534051 6q8y:L (3.1) BS01 rna ? GO:0000028 ... Q3E7X9 30911188
    534052 6q8y:M (3.1) BS01 rna ? GO:0002181 ... P41057 30911188
    534053 6q8y:M (3.1) BS02 ZN ? GO:0002181 ... P41057 30911188
    534054 6q8y:N (3.1) BS01 rna ? GO:0003735 ... P05759 30911188
    534055 6q8y:N (3.1) BS02 ZN ? GO:0003735 ... P05759 30911188
    534056 6q8y:O (3.1) BS01 rna ? GO:0001965 ... P38011 30911188
    534057 6q8y:P (3.1) BS01 rna ? GO:0003735 ... P32905 30911188
    534058 6q8y:Q (3.1) BS01 rna ? GO:0003735 ... P33442 30911188
    534059 6q8y:R (3.1) BS01 rna ? GO:0003723 ... P25443 30911188
    534060 6q8y:S (3.1) BS01 rna ? GO:0002181 ... P0CX35 30911188
    534061 6q8y:T (3.1) BS01 rna ? GO:0000462 ... P0CX37 30911188
    534062 6q8y:U (3.1) BS01 rna ? GO:0002181 ... P26786 30911188
    534063 6q8y:V (3.1) BS01 rna ? GO:0000462 ... P0CX39 30911188
    534064 6q8y:V (3.1) BS02 rna ? GO:0000462 ... P0CX39 30911188
    534065 6q8y:W (3.1) BS01 rna ? GO:0000462 ... O13516 30911188
    534066 6q8y:X (3.1) BS01 rna ? GO:0000028 ... P0CX47 30911188
    534067 6q8y:Y (3.1) BS01 rna ? GO:0000462 ... P05756 30911188
    534068 6q8y:Z (3.1) BS01 rna ? GO:0000028 ... P39516 30911188
    534069 6q8y:a (3.1) BS01 rna ? GO:0000447 ... P0C0V8 30911188
    534070 6q8y:b (3.1) BS01 rna ? GO:0002181 ... P0C0W1 30911188
    534071 6q8y:c (3.1) BS01 rna ? GO:0000462 ... P0CX29 30911188
    534072 6q8y:d (3.1) BS01 rna ? GO:0000462 ... P0CX31 30911188
    534073 6q8y:e (3.1) BS01 rna ? GO:0003735 ... P39939 30911188
    534074 6q8y:e (3.1) BS02 rna ? GO:0003735 ... P39939 30911188
    534075 6q8y:e (3.1) BS03 ZN ? GO:0003735 ... P39939 30911188
    534076 6q8y:f (3.1) BS01 rna ? GO:0000028 ... P35997 30911188
    534077 6q8y:g (3.1) BS01 rna ? GO:0002181 ... P0CX33 30911188
    534078 6q8y:z (3.1) BS01 rna 3.1.13.- GO:0003676 ... P22147 30911188
    534079 6q8y:z (3.1) BS02 rna 3.1.13.- GO:0003676 ... P22147 30911188
    534080 6q8y:z (3.1) BS03 rna 3.1.13.- GO:0003676 ... P22147 30911188
    534081 6q8y:z (3.1) BS04 MG 3.1.13.- GO:0003676 ... P22147 30911188
    534082 6q8y:z (3.1) BS05 MG 3.1.13.- GO:0003676 ... P22147 30911188
    534083 6q8z:A (2.4) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    534084 6q8z:A (2.4) BS02 HFK 2.7.1.6 GO:0004335 ... P51570 N/A
    534085 6q8z:A (2.4) BS03 HR5 2.7.1.6 GO:0004335 ... P51570 N/A
    534086 6q8z:B (2.4) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    534087 6q8z:B (2.4) BS02 HFK 2.7.1.6 GO:0004335 ... P51570 N/A
    534088 6q8z:C (2.4) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    534089 6q8z:C (2.4) BS02 HFK 2.7.1.6 GO:0004335 ... P51570 N/A
    534090 6q8z:C (2.4) BS03 HR5 2.7.1.6 GO:0004335 ... P51570 N/A
    534091 6q90:A (2.4) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    534092 6q90:A (2.4) BS02 HFK 2.7.1.6 GO:0004335 ... P51570 N/A
    534093 6q90:B (2.4) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    534094 6q90:B (2.4) BS02 HFK 2.7.1.6 GO:0004335 ... P51570 N/A
    534095 6q90:C (2.4) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    534096 6q90:C (2.4) BS02 HFK 2.7.1.6 GO:0004335 ... P51570 N/A
    534097 6q90:C (2.4) BS03 JHJ 2.7.1.6 GO:0004335 ... P51570 N/A
    534098 6q90:D (2.4) BS01 JHJ 2.7.1.6 GO:0004335 ... P51570 N/A
    534099 6q91:A (2.4) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    534100 6q91:A (2.4) BS02 HFK 2.7.1.6 GO:0004335 ... P51570 N/A
    534101 6q91:A (2.4) BS03 HR8 2.7.1.6 GO:0004335 ... P51570 N/A
    534102 6q91:B (2.4) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    534103 6q91:B (2.4) BS02 HFK 2.7.1.6 GO:0004335 ... P51570 N/A
    534104 6q91:B (2.4) BS03 HR8 2.7.1.6 GO:0004335 ... P51570 N/A
    534105 6q91:C (2.4) BS01 GAL 2.7.1.6 GO:0004335 ... P51570 N/A
    534106 6q91:C (2.4) BS02 HFK 2.7.1.6 GO:0004335 ... P51570 N/A
    534107 6q91:C (2.4) BS03 HR8 2.7.1.6 GO:0004335 ... P51570 N/A
    534108 6q91:D (2.4) BS01 HR8 2.7.1.6 GO:0004335 ... P51570 N/A
    534109 6q92:A (1.5) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32647818
    534110 6q92:A (1.5) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32647818
    534111 6q92:A (1.5) BS03 ABH 3.5.3.1 GO:0000050 ... P05089 32647818
    534112 6q92:A (1.5) BS04 NA 3.5.3.1 GO:0000050 ... P05089 32647818
    534113 6q92:B (1.5) BS01 MN 3.5.3.1 GO:0000050 ... P05089 32647818
    534114 6q92:B (1.5) BS02 MN 3.5.3.1 GO:0000050 ... P05089 32647818
    534115 6q92:B (1.5) BS03 ABH 3.5.3.1 GO:0000050 ... P05089 32647818
    534116 6q92:B (1.5) BS04 NA 3.5.3.1 GO:0000050 ... P05089 32647818
    534117 6q93:A (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... C1DI30 30141094
    534118 6q93:A (2.2) BS02 ADP 1.18.6.1 GO:0005524 ... C1DI30 30141094
    534119 6q93:B (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... C1DI30 30141094
    534120 6q93:B (2.2) BS02 ADP 1.18.6.1 GO:0005524 ... C1DI30 30141094
    534121 6q93:C (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... C1DI30 30141094
    534122 6q93:C (2.2) BS02 ADP 1.18.6.1 GO:0005524 ... C1DI30 30141094
    534123 6q93:D (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... C1DI30 30141094
    534124 6q93:D (2.2) BS02 ADP 1.18.6.1 GO:0005524 ... C1DI30 30141094
    534125 6q93:E (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... C1DI30 30141094
    534126 6q93:E (2.2) BS02 ADP 1.18.6.1 GO:0005524 ... C1DI30 30141094
    534127 6q93:F (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... C1DI30 30141094
    534128 6q93:F (2.2) BS02 ADP 1.18.6.1 GO:0005524 ... C1DI30 30141094
    534129 6q93:G (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... C1DI30 30141094
    534130 6q93:G (2.2) BS02 ADP 1.18.6.1 GO:0005524 ... C1DI30 30141094
    534131 6q93:H (2.2) BS01 SF4 1.18.6.1 GO:0005524 ... C1DI30 30141094
    534132 6q93:H (2.2) BS02 ADP 1.18.6.1 GO:0005524 ... C1DI30 30141094
    534133 6q94:A (2.8) BS01 NAP 4.2.1.47 GO:0005515 ... O60547 30984471
    534134 6q94:A (2.8) BS02 NAP 4.2.1.47 GO:0005515 ... O60547 30984471
    534135 6q94:A (2.8) BS03 GDD 4.2.1.47 GO:0005515 ... O60547 30984471
    534136 6q94:B (2.8) BS01 NAP 4.2.1.47 GO:0005515 ... O60547 30984471
    534137 6q94:B (2.8) BS02 GDD 4.2.1.47 GO:0005515 ... O60547 30984471
    534138 6q94:B (2.8) BS03 NAP 4.2.1.47 GO:0005515 ... O60547 30984471
    534139 6q94:C (2.8) BS01 NAP 4.2.1.47 GO:0005515 ... O60547 30984471
    534140 6q94:C (2.8) BS02 GDD 4.2.1.47 GO:0005515 ... O60547 30984471
    534141 6q94:C (2.8) BS03 NAP 4.2.1.47 GO:0005515 ... O60547 30984471
    534142 6q94:D (2.8) BS01 NAP 4.2.1.47 GO:0005515 ... O60547 30984471
    534143 6q94:D (2.8) BS02 GDD 4.2.1.47 GO:0005515 ... O60547 30984471
    534144 6q94:E (2.8) BS01 NAP 4.2.1.47 GO:0005515 ... O60547 30984471
    534145 6q94:E (2.8) BS02 NAP 4.2.1.47 GO:0005515 ... O60547 30984471
    534146 6q94:E (2.8) BS03 GDD 4.2.1.47 GO:0005515 ... O60547 30984471
    534147 6q94:F (2.8) BS01 NAP 4.2.1.47 GO:0005515 ... O60547 30984471
    534148 6q94:F (2.8) BS02 GDD 4.2.1.47 GO:0005515 ... O60547 30984471
    534149 6q94:F (2.8) BS03 NAP 4.2.1.47 GO:0005515 ... O60547 30984471
    534150 6q94:G (2.8) BS01 NAP 4.2.1.47 GO:0005515 ... O60547 30984471
    534151 6q94:G (2.8) BS02 GDD 4.2.1.47 GO:0005515 ... O60547 30984471
    534152 6q94:G (2.8) BS03 NAP 4.2.1.47 GO:0005515 ... O60547 30984471
    534153 6q94:H (2.8) BS01 NAP 4.2.1.47 GO:0005515 ... O60547 30984471
    534154 6q94:H (2.8) BS02 NAP 4.2.1.47 GO:0005515 ... O60547 30984471
    534155 6q94:H (2.8) BS03 GDD 4.2.1.47 GO:0005515 ... O60547 30984471
    534156 6q95:5 (3.7) BS01 rna ? GO:0003723 ... Q8RR57 30765567
    534157 6q95:5 (3.7) BS02 rna ? GO:0003723 ... Q8RR57 30765567
    534158 6q95:5 (3.7) BS03 rna ? GO:0003723 ... Q8RR57 30765567
    534159 6q95:5 (3.7) BS04 MG ? GO:0003723 ... Q8RR57 30765567
    534160 6q95:A (3.7) BS01 rna ? GO:0000049 ... Q5SLP7 30765567
    534161 6q95:A (3.7) BS02 rna ? GO:0000049 ... Q5SLP7 30765567
    534162 6q95:B (3.7) BS01 rna ? GO:0002181 ... P60405 30765567
    534163 6q95:B (3.7) BS02 rna ? GO:0002181 ... P60405 30765567
    534164 6q95:C (3.7) BS01 rna ? GO:0003735 ... Q5SHN8 30765567
    534165 6q95:D (3.7) BS01 rna ? GO:0003735 ... Q5SHN9 30765567
    534166 6q95:D (3.7) BS02 MG ? GO:0003735 ... Q5SHN9 30765567
    534167 6q95:E (3.7) BS01 rna ? GO:0000049 ... Q5SHQ0 30765567
    534168 6q95:E (3.7) BS02 rna ? GO:0000049 ... Q5SHQ0 30765567
    534169 6q95:E (3.7) BS03 rna ? GO:0000049 ... Q5SHQ0 30765567
    534170 6q95:F (3.7) BS01 rna ? GO:0003735 ... P0DOY8 30765567
    534171 6q95:G (3.7) BS01 rna ? GO:0003735 ... Q5SLQ1 30765567
    534172 6q95:H (3.7) BS01 rna N/A N/A N/A 30765567
    534173 6q95:I (3.7) BS01 rna N/A N/A N/A 30765567
    534174 6q95:J (3.7) BS01 rna ? GO:0003729 ... P60488 30765567
    534175 6q95:J (3.7) BS02 MG ? GO:0003729 ... P60488 30765567
    534176 6q95:K (3.7) BS01 rna ? GO:0003735 ... Q5SHP8 30765567
    534177 6q95:K (3.7) BS02 rna ? GO:0003735 ... Q5SHP8 30765567
    534178 6q95:L (3.7) BS01 rna ? GO:0003735 ... Q5SHQ7 30765567
    534179 6q95:M (3.7) BS01 rna ? GO:0000049 ... P60489 30765567
    534180 6q95:M (3.7) BS02 rna ? GO:0000049 ... P60489 30765567
    534181 6q95:M (3.7) BS03 rna ? GO:0000049 ... P60489 30765567
    534182 6q95:N (3.7) BS01 rna ? GO:0003735 ... Q9Z9H5 30765567
    534183 6q95:N (3.7) BS02 MG ? GO:0003735 ... Q9Z9H5 30765567
    534184 6q95:O (3.7) BS01 rna ? GO:0003735 ... Q5SHQ4 30765567
    534185 6q95:O (3.7) BS02 rna ? GO:0003735 ... Q5SHQ4 30765567
    534186 6q95:O (3.7) BS03 MG ? GO:0003735 ... Q5SHQ4 30765567
    534187 6q95:P (3.7) BS01 rna ? GO:0003735 ... P60490 30765567
    534188 6q95:P (3.7) BS02 rna ? GO:0003735 ... P60490 30765567
    534189 6q95:Q (3.7) BS01 rna ? GO:0000027 ... P60491 30765567
    534190 6q95:R (3.7) BS01 rna ? GO:0003723 ... P60492 30765567
    534191 6q95:S (3.7) BS01 rna ? GO:0003735 ... Q5SHP3 30765567
    534192 6q95:T (3.7) BS01 rna ? GO:0003735 ... Q5SHP0 30765567
    534193 6q95:U (3.7) BS01 rna ? GO:0003723 ... Q5SHP9 30765567
    534194 6q95:V (3.7) BS01 rna ? GO:0003735 ... Q5SHZ1 30765567
    534195 6q95:W (3.7) BS01 rna ? GO:0003735 ... P60493 30765567
    534196 6q95:W (3.7) BS02 rna ? GO:0003735 ... P60493 30765567
    534197 6q95:W (3.7) BS03 rna ? GO:0003735 ... P60493 30765567
    534198 6q95:X (3.7) BS01 rna ? GO:0005840 ... P60494 30765567
    534199 6q95:X (3.7) BS02 rna ? GO:0005840 ... P60494 30765567
    534200 6q95:Y (3.7) BS01 rna ? GO:0003735 ... Q5SHP6 30765567

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).