SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    534201 6q95:Z (3.7) BS01 rna ? GO:0003735 ... Q5SHQ6 30765567
    534202 6q95:Z (3.7) BS02 rna ? GO:0003735 ... Q5SHQ6 30765567
    534203 6q95:a (3.7) BS01 rna ? GO:0003735 ... Q5SJE1 30765567
    534204 6q95:b (3.7) BS01 rna ? GO:0003735 ... P80339 30765567
    534205 6q95:c (3.7) BS01 rna ? GO:0003735 ... P35871 30765567
    534206 6q95:d (3.7) BS01 rna ? GO:0003735 ... P80340 30765567
    534207 6q95:e (3.7) BS01 rna ? GO:0003735 ... Q5SKU1 30765567
    534208 6q95:f (3.7) BS01 rna ? GO:0003735 ... Q5SHR2 30765567
    534209 6q95:f (3.7) BS02 ZN ? GO:0003735 ... Q5SHR2 30765567
    534210 6q95:g (3.7) BS01 rna ? GO:0003735 ... P80371 30765567
    534211 6q95:h (3.7) BS01 rna ? GO:0003676 ... P80372 30765567
    534212 6q95:h (3.7) BS02 rna ? GO:0003676 ... P80372 30765567
    534213 6q95:i (3.7) BS01 rna ? GO:0003723 ... P80373 30765567
    534214 6q95:j (3.7) BS01 rna ? GO:0003723 ... Q5SHQ5 30765567
    534215 6q95:k (3.7) BS01 rna ? GO:0003735 ... Q5SLP8 30765567
    534216 6q95:l (3.7) BS01 rna ? GO:0000049 ... P17291 30765567
    534217 6q95:l (3.7) BS02 rna ? GO:0000049 ... P17291 30765567
    534218 6q95:m (3.7) BS01 rna ? GO:0003735 ... P0DOY9 30765567
    534219 6q95:n (3.7) BS01 rna ? GO:0000049 ... P80374 30765567
    534220 6q95:o (3.7) BS01 rna ? GO:0000049 ... Q5SHN7 30765567
    534221 6q95:p (3.7) BS01 rna ? GO:0003735 ... P80376 30765567
    534222 6q95:q (3.7) BS01 rna ? GO:0000049 ... Q5SHN3 30765567
    534223 6q95:q (3.7) BS02 MG ? GO:0000049 ... Q5SHN3 30765567
    534224 6q95:r (3.7) BS01 rna ? GO:0000049 ... P80377 30765567
    534225 6q95:r (3.7) BS02 MG ? GO:0000049 ... P80377 30765567
    534226 6q95:s (3.7) BS01 rna ? GO:0003735 ... P0DOY6 30765567
    534227 6q95:s (3.7) BS02 ZN ? GO:0003735 ... P0DOY6 30765567
    534228 6q95:t (3.7) BS01 rna ? GO:0003735 ... Q5SJ76 30765567
    534229 6q95:t (3.7) BS02 rna ? GO:0003735 ... Q5SJ76 30765567
    534230 6q95:u (3.7) BS01 rna ? GO:0003735 ... Q5SJH3 30765567
    534231 6q95:v (3.7) BS01 rna ? GO:0003735 ... P0DOY7 30765567
    534232 6q95:w (3.7) BS01 rna ? GO:0003735 ... Q5SLQ0 30765567
    534233 6q95:x (3.7) BS01 rna ? GO:0003723 ... Q5SHP2 30765567
    534234 6q95:y (3.7) BS01 rna ? GO:0003723 ... P80380 30765567
    534235 6q96:A (1.8) BS01 HRE 2.3.2.27 GO:0005634 ... Q00987 31066983 MOAD: ic50=0.1nM
    BindingDB: IC50=0.166nM
    534236 6q96:B (1.8) BS01 HRE 2.3.2.27 GO:0005634 ... Q00987 31066983 MOAD: ic50=0.1nM
    BindingDB: IC50=0.166nM
    534237 6q96:B (1.8) BS02 HRE 2.3.2.27 GO:0005634 ... Q00987 31066983 MOAD: ic50=0.1nM
    BindingDB: IC50=0.166nM
    534238 6q97:5 (3.9) BS01 rna ? GO:0003723 ... P0A832 30765567
    534239 6q97:5 (3.9) BS02 rna ? GO:0003723 ... P0A832 30765567
    534240 6q97:5 (3.9) BS03 rna ? GO:0003723 ... P0A832 30765567
    534241 6q97:B (3.9) BS01 rna N/A GO:0003723 ... N/A 30765567
    534242 6q97:C (3.9) BS01 rna ? GO:0000027 ... P60438 30765567
    534243 6q97:D (3.9) BS01 rna ? GO:0001070 ... P60723 30765567
    534244 6q97:E (3.9) BS01 rna ? GO:0000027 ... P62399 30765567
    534245 6q97:E (3.9) BS02 rna ? GO:0000027 ... P62399 30765567
    534246 6q97:E (3.9) BS03 rna ? GO:0000027 ... P62399 30765567
    534247 6q97:F (3.9) BS01 rna ? GO:0000027 ... P0AG55 30765567
    534248 6q97:G (3.9) BS01 rna ? GO:0002181 ... P0A7R1 30765567
    534249 6q97:H (3.9) BS01 rna ? GO:0003735 ... P0A7J3 30765567
    534250 6q97:I (3.9) BS01 rna ? GO:0000027 ... P0A7J7 30765567
    534251 6q97:J (3.9) BS01 rna ? GO:0003729 ... A0A379XJZ2 30765567
    534252 6q97:K (3.9) BS01 rna ? GO:0002181 ... P0ADY3 30765567
    534253 6q97:K (3.9) BS02 rna ? GO:0002181 ... P0ADY3 30765567
    534254 6q97:L (3.9) BS01 rna ? GO:0002181 ... P02413 30765567
    534255 6q97:L (3.9) BS02 MG ? GO:0002181 ... P02413 30765567
    534256 6q97:M (3.9) BS01 rna ? GO:0000027 ... P0ADY7 30765567
    534257 6q97:N (3.9) BS01 rna ? GO:0000027 ... P0AG44 30765567
    534258 6q97:O (3.9) BS01 rna ? GO:0002181 ... P0C018 30765567
    534259 6q97:O (3.9) BS02 rna ? GO:0002181 ... P0C018 30765567
    534260 6q97:P (3.9) BS01 rna ? GO:0000027 ... P0A7K6 30765567
    534261 6q97:P (3.9) BS02 rna ? GO:0000027 ... P0A7K6 30765567
    534262 6q97:Q (3.9) BS01 rna ? GO:0000027 ... P0A7L3 30765567
    534263 6q97:R (3.9) BS01 rna ? GO:0002181 ... P0AG48 30765567
    534264 6q97:S (3.9) BS01 rna N/A GO:0003735 ... N/A 30765567
    534265 6q97:T (3.9) BS01 rna ? GO:0000027 ... P0ADZ0 30765567
    534266 6q97:U (3.9) BS01 rna ? GO:0000027 ... P60624 30765567
    534267 6q97:V (3.9) BS01 rna ? GO:0000027 ... P68919 30765567
    534268 6q97:W (3.9) BS01 rna ? GO:0003735 ... P0A7L8 30765567
    534269 6q97:W (3.9) BS02 rna ? GO:0003735 ... P0A7L8 30765567
    534270 6q97:X (3.9) BS01 rna ? GO:0000027 ... P0A7M2 30765567
    534271 6q97:Y (3.9) BS01 rna N/A GO:0003735 ... N/A 30765567
    534272 6q97:Z (3.9) BS01 rna ? GO:0003735 ... A0A0E0XV41 30765567
    534273 6q97:Z (3.9) BS02 rna ? GO:0003735 ... A0A0E0XV41 30765567
    534274 6q97:a (3.9) BS01 rna ? GO:0002181 ... P0A7M9 30765567
    534275 6q97:a (3.9) BS02 rna ? GO:0002181 ... P0A7M9 30765567
    534276 6q97:b (3.9) BS01 rna N/A GO:0003735 ... N/A 30765567
    534277 6q97:c (3.9) BS01 rna ? GO:0000027 ... P0A7N9 30765567
    534278 6q97:d (3.9) BS01 rna ? GO:0002181 ... P0A7P5 30765567
    534279 6q97:e (3.9) BS01 rna ? GO:0002181 ... P0A7Q1 30765567
    534280 6q97:f (3.9) BS01 rna N/A GO:0003735 ... N/A 30765567
    534281 6q97:f (3.9) BS02 ZN N/A GO:0003735 ... N/A 30765567
    534282 6q97:g (3.9) BS01 rna ? GO:0000028 ... P0A7V0 30765567
    534283 6q97:h (3.9) BS01 rna ? GO:0003676 ... P0A7V3 30765567
    534284 6q97:h (3.9) BS02 rna ? GO:0003676 ... P0A7V3 30765567
    534285 6q97:i (3.9) BS01 rna ? GO:0000028 ... P0A7V8 30765567
    534286 6q97:j (3.9) BS01 rna ? GO:0000028 ... P0A7W1 30765567
    534287 6q97:k (3.9) BS01 rna ? GO:0003735 ... P02358 30765567
    534288 6q97:l (3.9) BS01 rna ? GO:0003723 ... P02359 30765567
    534289 6q97:l (3.9) BS02 rna ? GO:0003723 ... P02359 30765567
    534290 6q97:m (3.9) BS01 rna ? GO:0000028 ... P0A7W7 30765567
    534291 6q97:n (3.9) BS01 rna N/A GO:0003735 ... N/A 30765567
    534292 6q97:o (3.9) BS01 rna ? GO:0000049 ... P0A7R5 30765567
    534293 6q97:p (3.9) BS01 rna ? GO:0002181 ... P0A7R9 30765567
    534294 6q97:q (3.9) BS01 rna N/A GO:0003735 ... N/A 30765567
    534295 6q97:r (3.9) BS01 rna N/A GO:0003676 ... N/A 30765567
    534296 6q97:r (3.9) BS02 rna N/A GO:0003676 ... N/A 30765567
    534297 6q97:r (3.9) BS03 MG N/A GO:0003676 ... N/A 30765567
    534298 6q97:s (3.9) BS01 rna ? GO:0000028 ... P0AG59 30765567
    534299 6q97:t (3.9) BS01 rna ? GO:0000028 ... P0ADZ4 30765567
    534300 6q97:t (3.9) BS02 rna ? GO:0000028 ... P0ADZ4 30765567
    534301 6q97:u (3.9) BS01 rna N/A GO:0003735 ... N/A 30765567
    534302 6q97:v (3.9) BS01 rna ? GO:0000028 ... P0AG63 30765567
    534303 6q97:w (3.9) BS01 rna ? GO:0003735 ... P0A7T7 30765567
    534304 6q97:x (3.9) BS01 rna N/A GO:0003723 ... N/A 30765567
    534305 6q97:y (3.9) BS01 rna ? GO:0000028 ... P0A7U7 30765567
    534306 6q97:z (3.9) BS01 rna ? GO:0000028 ... P68679 30765567
    534307 6q98:5 (4.3) BS01 rna N/A GO:0003723 ... N/A 30765567
    534308 6q98:5 (4.3) BS02 rna N/A GO:0003723 ... N/A 30765567
    534309 6q98:5 (4.3) BS03 rna N/A GO:0003723 ... N/A 30765567
    534310 6q98:B (4.3) BS01 rna ? GO:0000027 ... P60422 30765567
    534311 6q98:B (4.3) BS02 MG ? GO:0000027 ... P60422 30765567
    534312 6q98:C (4.3) BS01 rna ? GO:0000027 ... P60438 30765567
    534313 6q98:D (4.3) BS01 rna ? GO:0001070 ... P60723 30765567
    534314 6q98:E (4.3) BS01 rna ? GO:0000027 ... P62399 30765567
    534315 6q98:E (4.3) BS02 rna ? GO:0000027 ... P62399 30765567
    534316 6q98:E (4.3) BS03 rna ? GO:0000027 ... P62399 30765567
    534317 6q98:F (4.3) BS01 rna ? GO:0000027 ... P0AG55 30765567
    534318 6q98:G (4.3) BS01 rna ? GO:0002181 ... P0A7R1 30765567
    534319 6q98:H (4.3) BS01 rna ? GO:0002181 ... P0A7J3 30765567
    534320 6q98:I (4.3) BS01 rna ? GO:0000027 ... P0A7J7 30765567
    534321 6q98:J (4.3) BS01 rna ? GO:0002181 ... P0AA10 30765567
    534322 6q98:K (4.3) BS01 rna ? GO:0002181 ... P0ADY3 30765567
    534323 6q98:K (4.3) BS02 rna ? GO:0002181 ... P0ADY3 30765567
    534324 6q98:L (4.3) BS01 rna ? GO:0002181 ... P02413 30765567
    534325 6q98:M (4.3) BS01 rna ? GO:0000027 ... P0ADY7 30765567
    534326 6q98:M (4.3) BS02 rna ? GO:0000027 ... P0ADY7 30765567
    534327 6q98:N (4.3) BS01 rna ? GO:0000027 ... P0AG44 30765567
    534328 6q98:O (4.3) BS01 rna ? GO:0002181 ... P0C018 30765567
    534329 6q98:O (4.3) BS02 rna ? GO:0002181 ... P0C018 30765567
    534330 6q98:P (4.3) BS01 rna ? GO:0000027 ... P0A7K6 30765567
    534331 6q98:P (4.3) BS02 rna ? GO:0000027 ... P0A7K6 30765567
    534332 6q98:Q (4.3) BS01 rna ? GO:0000027 ... P0A7L3 30765567
    534333 6q98:R (4.3) BS01 rna ? GO:0002181 ... P0AG48 30765567
    534334 6q98:S (4.3) BS01 rna ? GO:0002181 ... P61175 30765567
    534335 6q98:S (4.3) BS02 peptide ? GO:0002181 ... P61175 30765567
    534336 6q98:T (4.3) BS01 rna ? GO:0000027 ... P0ADZ0 30765567
    534337 6q98:U (4.3) BS01 rna ? GO:0000027 ... P60624 30765567
    534338 6q98:U (4.3) BS02 MG ? GO:0000027 ... P60624 30765567
    534339 6q98:V (4.3) BS01 rna ? GO:0000027 ... P68919 30765567
    534340 6q98:W (4.3) BS01 rna ? GO:0000027 ... P0A7L8 30765567
    534341 6q98:W (4.3) BS02 rna ? GO:0000027 ... P0A7L8 30765567
    534342 6q98:X (4.3) BS01 rna ? GO:0000027 ... P0A7M2 30765567
    534343 6q98:Y (4.3) BS01 rna ? GO:0000027 ... P0A7M6 30765567
    534344 6q98:Z (4.3) BS01 rna ? GO:0000027 ... P0AG51 30765567
    534345 6q98:a (4.3) BS01 rna ? GO:0002181 ... P0A7M9 30765567
    534346 6q98:a (4.3) BS02 ZN ? GO:0002181 ... P0A7M9 30765567
    534347 6q98:b (4.3) BS01 rna ? GO:0000027 ... P0A7N4 30765567
    534348 6q98:c (4.3) BS01 rna ? GO:0000027 ... P0A7N9 30765567
    534349 6q98:d (4.3) BS01 rna ? GO:0002181 ... P0A7P5 30765567
    534350 6q98:e (4.3) BS01 rna ? GO:0002181 ... P0A7Q1 30765567
    534351 6q98:f (4.3) BS01 rna ? GO:0002181 ... P0A7Q6 30765567
    534352 6q98:g (4.3) BS01 rna ? GO:0000028 ... P0A7V0 30765567
    534353 6q98:g (4.3) BS02 rna ? GO:0000028 ... P0A7V0 30765567
    534354 6q98:h (4.3) BS01 rna ? GO:0000028 ... P0A7V3 30765567
    534355 6q98:h (4.3) BS02 rna ? GO:0000028 ... P0A7V3 30765567
    534356 6q98:i (4.3) BS01 rna ? GO:0000028 ... P0A7V8 30765567
    534357 6q98:i (4.3) BS02 MG ? GO:0000028 ... P0A7V8 30765567
    534358 6q98:j (4.3) BS01 rna ? GO:0000028 ... P0A7W1 30765567
    534359 6q98:j (4.3) BS02 rna ? GO:0000028 ... P0A7W1 30765567
    534360 6q98:k (4.3) BS01 rna ? GO:0002181 ... P02358 30765567
    534361 6q98:l (4.3) BS01 rna ? GO:0000028 ... P02359 30765567
    534362 6q98:m (4.3) BS01 rna ? GO:0000028 ... P0A7W7 30765567
    534363 6q98:n (4.3) BS01 rna ? GO:0000049 ... P0A7X3 30765567
    534364 6q98:o (4.3) BS01 rna ? GO:0000049 ... P0A7R5 30765567
    534365 6q98:p (4.3) BS01 rna ? GO:0002181 ... P0A7R9 30765567
    534366 6q98:q (4.3) BS01 rna N/A GO:0003735 ... N/A 30765567
    534367 6q98:r (4.3) BS01 rna ? GO:0000049 ... P0A7S9 30765567
    534368 6q98:r (4.3) BS02 MG ? GO:0000049 ... P0A7S9 30765567
    534369 6q98:r (4.3) BS03 MG ? GO:0000049 ... P0A7S9 30765567
    534370 6q98:s (4.3) BS01 rna ? GO:0000028 ... P0AG59 30765567
    534371 6q98:t (4.3) BS01 rna ? GO:0000028 ... P0ADZ4 30765567
    534372 6q98:t (4.3) BS02 rna ? GO:0000028 ... P0ADZ4 30765567
    534373 6q98:u (4.3) BS01 rna ? GO:0000028 ... P0A7T3 30765567
    534374 6q98:v (4.3) BS01 rna ? GO:0000028 ... P0AG63 30765567
    534375 6q98:w (4.3) BS01 rna ? GO:0002181 ... P0A7T7 30765567
    534376 6q98:x (4.3) BS01 rna ? GO:0000028 ... P0A7U3 30765567
    534377 6q98:x (4.3) BS02 rna ? GO:0000028 ... P0A7U3 30765567
    534378 6q98:y (4.3) BS01 rna ? GO:0000028 ... P0A7U7 30765567
    534379 6q98:z (4.3) BS01 rna ? GO:0000028 ... P68679 30765567
    534380 6q99:A (2.951) BS01 MN3 2.7.7.48
    3.1.-.-    		 N/A Q9E005 N/A
    534381 6q99:A (2.951) BS02 MN3 2.7.7.48
    3.1.-.-    		 N/A Q9E005 N/A
    534382 6q9a:5 (3.7) BS01 rna ? GO:0003723 ... P0A832 30765567
    534383 6q9a:5 (3.7) BS02 rna ? GO:0003723 ... P0A832 30765567
    534384 6q9a:B (3.7) BS01 rna ? GO:0000027 ... P60422 30765567
    534385 6q9a:C (3.7) BS01 rna ? GO:0000027 ... P60438 30765567
    534386 6q9a:D (3.7) BS01 rna ? GO:0001070 ... P60723 30765567
    534387 6q9a:E (3.7) BS01 rna ? GO:0000027 ... P62399 30765567
    534388 6q9a:E (3.7) BS02 rna ? GO:0000027 ... P62399 30765567
    534389 6q9a:E (3.7) BS03 rna ? GO:0000027 ... P62399 30765567
    534390 6q9a:F (3.7) BS01 rna ? GO:0000027 ... P0AG55 30765567
    534391 6q9a:G (3.7) BS01 rna ? GO:0002181 ... P0A7R1 30765567
    534392 6q9a:H (3.7) BS01 rna ? GO:0003735 ... P0A7J3 30765567
    534393 6q9a:I (3.7) BS01 rna ? GO:0000027 ... P0A7J7 30765567
    534394 6q9a:J (3.7) BS01 rna ? GO:0002181 ... P0AA10 30765567
    534395 6q9a:K (3.7) BS01 rna ? GO:0002181 ... P0ADY3 30765567
    534396 6q9a:K (3.7) BS02 rna ? GO:0002181 ... P0ADY3 30765567
    534397 6q9a:L (3.7) BS01 rna ? GO:0002181 ... P02413 30765567
    534398 6q9a:M (3.7) BS01 rna ? GO:0000027 ... P0ADY7 30765567
    534399 6q9a:M (3.7) BS02 rna ? GO:0000027 ... P0ADY7 30765567
    534400 6q9a:N (3.7) BS01 rna ? GO:0000027 ... P0AG44 30765567
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).